Wall clock time and date at job start Tue Mar 31 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99836 * 2 1 4 4 N 1.46492 * 109.47338 * 125.00086 * 3 2 1 5 5 C 1.46505 * 119.99905 * 269.99790 * 4 3 2 6 6 C 1.50697 * 109.47129 * 269.99933 * 5 4 3 7 7 H 1.08004 * 120.00054 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99987 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99802 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46972 * 89.99965 * 10 8 6 12 12 H 1.48494 * 109.46896 * 210.00003 * 10 8 6 13 13 H 1.48500 * 109.47132 * 330.00182 * 10 8 6 14 14 C 1.34780 * 120.00506 * 89.99640 * 4 3 2 15 15 O 1.21281 * 120.00434 * 180.02562 * 14 4 3 16 16 C 1.50703 * 119.99575 * 0.02562 * 14 4 3 17 17 C 1.52996 * 109.47094 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47210 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.33391 * 125.19937 * 90.00083 * 19 18 17 21 21 C 1.38423 * 114.92045 * 179.97438 * 20 19 18 22 22 C 1.33390 * 114.91979 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20693 * 269.69344 * 19 18 17 24 24 H 1.07996 * 119.99804 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99431 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00156 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47125 * 4.99753 * 3 2 1 28 28 H 1.09004 * 109.46848 * 244.99959 * 3 2 1 29 29 H 1.08995 * 109.46831 * 29.99912 * 5 4 3 30 30 H 1.09004 * 109.47224 * 150.00190 * 5 4 3 31 31 H 0.96999 * 119.99767 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47561 * 59.99923 * 16 14 4 33 33 H 1.09000 * 109.46976 * 299.99617 * 16 14 4 34 34 H 1.09000 * 109.47531 * 59.99538 * 17 16 14 35 35 H 1.09008 * 109.47250 * 300.00113 * 17 16 14 36 36 H 1.09000 * 109.46884 * 60.00289 * 18 17 16 37 37 H 1.09000 * 109.46955 * 299.99604 * 18 17 16 38 38 H 1.07995 * 122.54106 * 359.95411 * 20 19 18 39 39 H 1.08001 * 122.53959 * 180.02562 * 21 20 19 40 40 H 1.07998 * 125.20163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1313 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3040 3.8371 1.6366 8 6 2.5183 4.0669 3.6081 9 7 2.7669 5.3574 3.6563 10 14 1.7224 3.2139 5.0670 11 1 2.7777 2.7228 5.9893 12 1 0.8459 4.1743 5.7841 13 1 0.9112 2.0663 4.5872 14 6 4.2497 0.8663 0.9824 15 8 5.0197 0.8881 1.9192 16 6 4.6973 0.3184 -0.3483 17 6 6.1533 -0.1404 -0.2472 18 6 6.6075 -0.6972 -1.5980 19 6 8.0420 -1.1486 -1.4986 20 6 8.4404 -2.3730 -1.1502 21 6 9.8123 -2.5558 -1.1283 22 6 10.5280 -1.4799 -1.4595 23 16 9.4465 -0.1438 -1.8315 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4888 1.6968 2.5458 30 1 3.0990 1.3605 3.2259 31 1 2.5373 5.8662 4.4496 32 1 4.6126 1.0952 -1.1081 33 1 4.0682 -0.5284 -0.6227 34 1 6.2376 -0.9174 0.5126 35 1 6.7828 0.7061 0.0275 36 1 6.5233 0.0795 -2.3580 37 1 5.9781 -1.5438 -1.8721 38 1 7.7453 -3.1618 -0.9035 39 1 10.2687 -3.4983 -0.8640 40 1 11.6065 -1.4371 -1.4973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292262618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:46 Heat of formation + Delta-G solvation = 7.597914 kcal Electronic energy + Delta-G solvation = -20451.458790 eV Core-core repulsion = 17358.240597 eV Total energy + Delta-G solvation = -3093.218192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.28915 -38.07082 -35.83908 -34.66697 -33.16449 -32.11325 -30.57205 -28.39436 -26.61855 -25.48169 -23.80118 -22.40100 -21.17864 -20.00803 -19.35864 -18.37304 -17.23205 -16.89994 -16.22918 -15.77379 -15.59395 -15.34095 -14.53501 -14.25179 -13.86905 -13.57954 -13.25300 -13.13523 -12.82207 -12.55015 -12.46698 -12.32440 -11.84411 -11.71507 -11.59700 -11.58685 -11.24940 -11.11789 -10.92520 -10.85187 -10.56482 -10.50751 -10.13378 -9.55299 -9.27600 -8.99655 -8.71702 -8.57725 -8.57043 -7.73107 -6.07742 -4.06252 0.90025 1.53995 1.91377 2.35365 2.63996 3.30164 3.36169 3.37197 3.38270 3.90449 4.40771 4.62308 4.91210 4.93111 4.98716 5.13735 5.20931 5.25374 5.30628 5.38062 5.44279 5.49598 5.56879 5.65561 5.67723 5.82647 5.93868 5.98085 6.13188 6.17776 6.24096 6.39469 6.44525 6.70294 6.72408 6.84059 6.97085 7.37319 7.62817 8.26389 8.48234 8.94089 9.00990 9.52880 11.05661 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.003382 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.518221 B = 8277.695235 C = 9225.218777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.169 4.169 3 C 0.136 3.864 4 N -0.591 5.591 5 C 0.217 3.783 6 C -0.528 4.528 7 H 0.074 0.926 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.506 3.494 15 O -0.539 6.539 16 C -0.139 4.139 17 C -0.098 4.098 18 C -0.051 4.051 19 C -0.161 4.161 20 C -0.147 4.147 21 C -0.132 4.132 22 C -0.223 4.223 23 S 0.097 5.903 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -15.607 -14.231 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.322 5.322 5 C 0.096 3.904 6 C -0.567 4.567 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.293 3.707 15 O -0.417 6.417 16 C -0.180 4.180 17 C -0.137 4.137 18 C -0.090 4.090 19 C -0.279 4.279 20 C -0.177 4.177 21 C -0.163 4.163 22 C -0.358 4.358 23 S 0.360 5.640 24 H 0.118 0.882 25 H 0.112 0.888 26 H 0.123 0.877 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.846 -13.912 -14.043 20.919 hybrid contribution -0.600 -1.757 1.284 2.258 sum 6.246 -15.669 -12.759 21.150 Atomic orbital electron populations 1.23844 0.95882 1.01816 1.00656 1.23460 0.96390 0.99109 0.99833 1.20599 0.93127 0.95247 0.89790 1.47920 1.10889 1.60498 1.12886 1.19634 0.94819 0.95116 0.80811 1.21337 1.41049 0.91178 1.03089 0.90770 1.24853 0.95304 0.94723 0.98125 1.69897 1.47858 1.06593 1.29282 0.86861 0.79882 0.79670 0.83368 1.19910 1.21074 1.19047 1.20412 0.81962 0.78338 0.89950 1.90674 1.52426 1.56313 1.42249 1.21715 0.97615 1.01851 0.96788 1.21345 0.94750 1.01953 0.95620 1.20243 0.88772 1.01305 0.98703 1.24566 0.99085 0.97022 1.07201 1.20119 0.95810 0.97248 1.04548 1.20159 0.93475 0.99558 1.03117 1.25582 1.03213 0.96698 1.10317 1.84384 0.96767 1.15317 1.67499 0.88226 0.88767 0.87718 0.89334 0.90358 0.95325 0.94666 0.92584 0.89268 0.89520 0.90914 0.90814 0.90654 0.89932 0.84384 0.84528 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 14.32 29.01 0.42 -1.78 16 2 C -0.17 -2.20 9.74 -36.03 -0.35 -2.55 16 3 C 0.14 2.10 5.65 -5.20 -0.03 2.07 16 4 N -0.59 -12.03 2.44 -176.43 -0.43 -12.46 16 5 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 6 C -0.53 -15.26 9.94 -34.44 -0.34 -15.61 16 7 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 10 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 C 0.51 10.12 7.67 -10.98 -0.08 10.04 16 15 O -0.54 -13.27 15.56 5.56 0.09 -13.19 16 16 C -0.14 -1.90 4.25 -27.88 -0.12 -2.02 16 17 C -0.10 -1.31 4.49 -26.73 -0.12 -1.43 16 18 C -0.05 -0.52 5.71 -27.88 -0.16 -0.68 16 19 C -0.16 -1.79 5.76 -36.00 -0.21 -2.00 16 20 C -0.15 -1.54 10.05 -41.21 -0.41 -1.96 16 21 C -0.13 -1.29 10.18 -41.21 -0.42 -1.71 16 22 C -0.22 -2.16 11.23 29.04 0.33 -1.84 16 23 S 0.10 1.05 23.33 -107.50 -2.51 -1.46 16 24 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 25 H 0.09 0.96 8.06 -52.49 -0.42 0.53 16 26 H 0.10 1.26 7.83 -52.48 -0.41 0.84 16 27 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 28 H 0.08 1.00 6.44 -51.93 -0.33 0.66 16 29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.09 1.08 7.40 -51.93 -0.38 0.70 16 33 H 0.09 0.95 7.78 -51.93 -0.40 0.55 16 34 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.07 1.15 8.10 -51.92 -0.42 0.73 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -34.32 352.27 -9.10 -43.42 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.04 Total: 0.43 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.62 Total: -12.12 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.34 Total: -39.55 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.32 -9.10 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292262618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.019 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds