Wall clock time and date at job start Tue Mar 31 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99836 * 2 1 4 4 N 1.46492 * 109.47338 * 125.00086 * 3 2 1 5 5 C 1.46505 * 119.99905 * 269.99790 * 4 3 2 6 6 C 1.50697 * 109.47129 * 269.99933 * 5 4 3 7 7 H 1.08004 * 120.00054 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99987 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99802 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46972 * 89.99965 * 10 8 6 12 12 H 1.48494 * 109.46896 * 210.00003 * 10 8 6 13 13 H 1.48500 * 109.47132 * 330.00182 * 10 8 6 14 14 C 1.34780 * 120.00506 * 89.99640 * 4 3 2 15 15 O 1.21281 * 120.00434 * 180.02562 * 14 4 3 16 16 C 1.50703 * 119.99575 * 0.02562 * 14 4 3 17 17 C 1.52996 * 109.47094 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47210 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.33391 * 125.19937 * 90.00083 * 19 18 17 21 21 C 1.38423 * 114.92045 * 179.97438 * 20 19 18 22 22 C 1.33390 * 114.91979 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20693 * 269.69344 * 19 18 17 24 24 H 1.07996 * 119.99804 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99431 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.00156 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47125 * 4.99753 * 3 2 1 28 28 H 1.09004 * 109.46848 * 244.99959 * 3 2 1 29 29 H 1.08995 * 109.46831 * 29.99912 * 5 4 3 30 30 H 1.09004 * 109.47224 * 150.00190 * 5 4 3 31 31 H 0.96999 * 119.99767 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47561 * 59.99923 * 16 14 4 33 33 H 1.09000 * 109.46976 * 299.99617 * 16 14 4 34 34 H 1.09000 * 109.47531 * 59.99538 * 17 16 14 35 35 H 1.09008 * 109.47250 * 300.00113 * 17 16 14 36 36 H 1.09000 * 109.46884 * 60.00289 * 18 17 16 37 37 H 1.09000 * 109.46955 * 299.99604 * 18 17 16 38 38 H 1.07995 * 122.54106 * 359.95411 * 20 19 18 39 39 H 1.08001 * 122.53959 * 180.02562 * 21 20 19 40 40 H 1.07998 * 125.20163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1313 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3438 2.4803 7 1 3.3040 3.8371 1.6366 8 6 2.5183 4.0669 3.6081 9 7 2.7669 5.3574 3.6563 10 14 1.7224 3.2139 5.0670 11 1 2.7777 2.7228 5.9893 12 1 0.8459 4.1743 5.7841 13 1 0.9112 2.0663 4.5872 14 6 4.2497 0.8663 0.9824 15 8 5.0197 0.8881 1.9192 16 6 4.6973 0.3184 -0.3483 17 6 6.1533 -0.1404 -0.2472 18 6 6.6075 -0.6972 -1.5980 19 6 8.0420 -1.1486 -1.4986 20 6 8.4404 -2.3730 -1.1502 21 6 9.8123 -2.5558 -1.1283 22 6 10.5280 -1.4799 -1.4595 23 16 9.4465 -0.1438 -1.8315 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4026 -0.9314 29 1 1.4888 1.6968 2.5458 30 1 3.0990 1.3605 3.2259 31 1 2.5373 5.8662 4.4496 32 1 4.6126 1.0952 -1.1081 33 1 4.0682 -0.5284 -0.6227 34 1 6.2376 -0.9174 0.5126 35 1 6.7828 0.7061 0.0275 36 1 6.5233 0.0795 -2.3580 37 1 5.9781 -1.5438 -1.8721 38 1 7.7453 -3.1618 -0.9035 39 1 10.2687 -3.4983 -0.8640 40 1 11.6065 -1.4371 -1.4973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292262618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:46 Heat of formation + Delta-G solvation = -12.682649 kcal Electronic energy + Delta-G solvation = -20452.338221 eV Core-core repulsion = 17358.240597 eV Total energy + Delta-G solvation = -3094.097624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82677 -38.86268 -37.29299 -35.74416 -34.99791 -33.72753 -31.71029 -30.08406 -27.65910 -26.83005 -25.03651 -23.80235 -22.39500 -21.08453 -20.13664 -19.79226 -19.09887 -18.20198 -17.58665 -17.21270 -16.78102 -16.36050 -16.02918 -15.69592 -15.18404 -14.79191 -14.50055 -14.35020 -14.18744 -13.75981 -13.65930 -13.45209 -13.33445 -13.08928 -12.89083 -12.66782 -12.54879 -12.45165 -12.27048 -12.20687 -11.93486 -11.74901 -11.72109 -11.48794 -10.84722 -10.63455 -10.28987 -9.51737 -9.42534 -9.38837 -8.35436 -6.40193 0.11908 0.76147 1.14311 1.29857 1.34543 1.36310 1.43430 1.83568 1.88038 2.29373 2.45865 2.98943 3.68834 3.76263 4.03847 4.10590 4.23721 4.24994 4.29266 4.41446 4.52149 4.57827 4.68711 4.71876 4.75579 4.79718 4.89824 4.92617 4.97236 5.10270 5.12075 5.30360 5.37353 5.43294 5.45625 5.55993 5.65262 5.74985 5.95353 6.23462 6.61052 6.72086 7.20886 7.45159 8.81537 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.003382 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.518221 B = 8277.695235 C = 9225.218777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.180 4.180 3 C 0.131 3.869 4 N -0.598 5.598 5 C 0.227 3.773 6 C -0.536 4.536 7 H 0.029 0.971 8 C 0.011 3.989 9 N -0.945 5.945 10 Si 0.946 3.054 11 H -0.277 1.277 12 H -0.273 1.273 13 H -0.239 1.239 14 C 0.494 3.506 15 O -0.598 6.598 16 C -0.125 4.125 17 C -0.091 4.091 18 C -0.041 4.041 19 C -0.179 4.179 20 C -0.151 4.151 21 C -0.142 4.142 22 C -0.222 4.222 23 S 0.061 5.939 24 H 0.096 0.904 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.045 0.955 30 H 0.015 0.985 31 H 0.268 0.732 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -18.517 -15.270 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.199 4.199 3 C 0.009 3.991 4 N -0.328 5.328 5 C 0.104 3.896 6 C -0.574 4.574 7 H 0.048 0.952 8 C -0.187 4.187 9 N -0.585 5.585 10 Si 0.769 3.231 11 H -0.203 1.203 12 H -0.198 1.198 13 H -0.163 1.163 14 C 0.284 3.716 15 O -0.479 6.479 16 C -0.164 4.164 17 C -0.130 4.130 18 C -0.080 4.080 19 C -0.296 4.296 20 C -0.181 4.181 21 C -0.172 4.172 22 C -0.357 4.357 23 S 0.324 5.676 24 H 0.114 0.886 25 H 0.136 0.864 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.126 0.874 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.172 0.828 39 H 0.178 0.822 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.513 -16.838 -15.142 23.307 hybrid contribution -0.147 -0.806 1.552 1.755 sum 5.367 -17.644 -13.590 22.909 Atomic orbital electron populations 1.24070 0.95627 1.02856 0.98448 1.23327 0.96662 0.98173 1.01724 1.20861 0.92652 0.96484 0.89105 1.48034 1.12170 1.59933 1.12698 1.19241 0.95225 0.92062 0.83022 1.21577 1.40456 0.93545 1.01852 0.95247 1.25843 0.95976 0.95372 1.01505 1.70046 1.49439 1.08452 1.30544 0.85739 0.79078 0.79389 0.78907 1.20266 1.19805 1.16256 1.21587 0.81077 0.77320 0.91642 1.90639 1.53886 1.58680 1.44740 1.21735 0.98076 1.03543 0.93051 1.21237 0.94145 1.00323 0.97288 1.20186 0.88701 1.02457 0.96660 1.24735 0.99308 0.97267 1.08308 1.20448 0.96589 0.97420 1.03612 1.20490 0.93393 1.00503 1.02787 1.25889 1.04132 0.95912 1.09758 1.84487 0.98093 1.16804 1.68258 0.88561 0.86391 0.86021 0.90895 0.87434 0.93744 0.96704 0.92259 0.87133 0.85495 0.92377 0.94161 0.89644 0.87192 0.82783 0.82248 0.80122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.52 14.32 67.78 0.97 -2.54 16 2 C -0.18 -4.11 9.74 25.64 0.25 -3.86 16 3 C 0.13 3.81 5.65 85.63 0.48 4.29 16 4 N -0.60 -24.18 2.44 -830.50 -2.03 -26.20 16 5 C 0.23 11.28 4.23 85.63 0.36 11.64 16 6 C -0.54 -32.06 9.94 25.60 0.25 -31.80 16 7 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 8 C 0.01 0.66 5.47 84.66 0.46 1.13 16 9 N -0.94 -60.48 13.96 21.45 0.30 -60.18 16 10 Si 0.95 45.27 27.47 68.60 1.88 47.16 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 14 C 0.49 19.76 7.67 87.66 0.67 20.43 16 15 O -0.60 -30.52 15.56 -3.03 -0.05 -30.57 16 16 C -0.12 -3.15 4.25 29.85 0.13 -3.03 16 17 C -0.09 -2.37 4.49 30.59 0.14 -2.24 16 18 C -0.04 -0.75 5.71 29.85 0.17 -0.58 16 19 C -0.18 -3.76 5.76 24.59 0.14 -3.62 16 20 C -0.15 -2.88 10.05 21.22 0.21 -2.67 16 21 C -0.14 -2.50 10.18 21.22 0.22 -2.28 16 22 C -0.22 -4.04 11.23 66.72 0.75 -3.29 16 23 S 0.06 1.30 23.33 -56.49 -1.32 -0.02 16 24 H 0.10 2.02 7.84 -2.91 -0.02 2.00 16 25 H 0.12 1.88 8.06 -2.91 -0.02 1.86 16 26 H 0.12 2.40 7.83 -2.91 -0.02 2.37 16 27 H 0.07 2.33 7.72 -2.39 -0.02 2.32 16 28 H 0.11 2.44 6.44 -2.39 -0.02 2.43 16 29 H 0.04 2.06 7.13 -2.39 -0.02 2.04 16 30 H 0.01 0.80 6.85 -2.38 -0.02 0.78 16 31 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 32 H 0.11 2.37 7.40 -2.39 -0.02 2.36 16 33 H 0.13 2.24 7.78 -2.39 -0.02 2.22 16 34 H 0.06 1.66 8.10 -2.39 -0.02 1.65 16 35 H 0.04 1.30 8.10 -2.38 -0.02 1.28 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -79.37 352.27 4.95 -74.42 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.95 Total: 13.80 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 5.21 Total: -18.41 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.73 Total: -86.38 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.05 Total: -30.57 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.88 Total: 47.16 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.32 Total: -0.02 kcal Total: -79.37 4.95 -74.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292262618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.735 kcal (2) G-P(sol) polarization free energy of solvation -79.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds