Wall clock time and date at job start Tue Mar 31 2020 07:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58188 * 2 1 4 4 C 1.53537 * 109.68986 * 120.33476 * 2 1 3 5 5 N 1.47315 * 107.55806 * 178.05690 * 4 2 1 6 6 C 1.34771 * 121.16347 * 137.98615 * 5 4 2 7 7 O 1.21289 * 120.00286 * 175.75396 * 6 5 4 8 8 C 1.50701 * 120.00040 * 355.75697 * 6 5 4 9 9 C 1.53002 * 109.47285 * 184.98083 * 8 6 5 10 10 C 1.50701 * 109.46941 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00426 * 0.02562 * 10 9 8 12 12 C 1.37887 * 119.99606 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99614 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99794 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47306 * 90.00332 * 14 12 10 16 16 H 1.48498 * 109.46791 * 210.00123 * 14 12 10 17 17 H 1.48499 * 109.47355 * 329.99759 * 14 12 10 18 18 C 1.40555 * 117.67394 * 317.96558 * 5 4 2 19 19 C 1.38646 * 120.06560 * 193.64653 * 18 5 4 20 20 C 1.38229 * 119.91973 * 180.30096 * 19 18 5 21 21 C 1.38293 * 120.07718 * 0.03478 * 20 19 18 22 22 C 1.38373 * 120.26418 * 359.89356 * 21 20 19 23 23 F 1.35096 * 119.99116 * 180.02562 * 22 21 20 24 24 C 1.38905 * 120.01253 * 0.03628 * 22 21 20 25 25 O 1.35957 * 119.65717 * 180.12866 * 24 22 21 26 26 H 1.08996 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47008 * 300.00410 * 1 2 3 28 28 H 1.08995 * 109.46812 * 60.00207 * 1 2 3 29 29 H 1.09004 * 109.83231 * 297.54770 * 4 2 1 30 30 H 1.08998 * 109.83797 * 58.51288 * 4 2 1 31 31 H 1.09004 * 109.47384 * 304.98428 * 8 6 5 32 32 H 1.09000 * 109.47231 * 64.98444 * 8 6 5 33 33 H 1.08990 * 109.47211 * 300.00699 * 9 8 6 34 34 H 1.09008 * 109.46770 * 60.00265 * 9 8 6 35 35 H 0.97002 * 119.99934 * 180.02562 * 13 12 10 36 36 H 1.07998 * 120.04189 * 0.28529 * 19 18 5 37 37 H 1.07998 * 119.96270 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.86541 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0473 -0.7301 1.2477 5 7 3.5187 -0.7437 1.1766 6 6 4.2719 -0.5047 2.2683 7 8 5.4796 -0.5967 2.2039 8 6 3.6137 -0.1231 3.5691 9 6 4.6882 0.2111 4.6057 10 6 4.0299 0.5933 5.9064 11 1 2.9528 0.5969 5.9859 12 6 4.8027 0.9382 6.9949 13 7 4.2282 1.2712 8.1301 14 14 6.6656 0.9326 6.8572 15 1 7.1333 2.2707 6.4146 16 1 7.2587 0.6136 8.1807 17 1 7.0856 -0.0912 5.8669 18 6 4.1096 -1.0150 -0.0696 19 6 5.4599 -1.3197 -0.1464 20 6 6.0392 -1.5800 -1.3742 21 6 5.2737 -1.5359 -2.5250 22 6 3.9252 -1.2338 -2.4545 23 9 3.1824 -1.1928 -3.5822 24 6 3.3352 -0.9725 -1.2244 25 8 2.0091 -0.6790 -1.1631 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7254 -0.2020 2.1453 30 1 1.6677 -1.7517 1.2624 31 1 2.9767 0.7474 3.4124 32 1 3.0090 -0.9559 3.9283 33 1 5.3252 -0.6593 4.7624 34 1 5.2929 1.0439 4.2466 35 1 4.7718 1.5143 8.8958 36 1 6.0585 -1.3535 0.7519 37 1 7.0909 -1.8178 -1.4348 38 1 5.7299 -1.7394 -3.4825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292311477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:49 Heat of formation + Delta-G solvation = -82.126022 kcal Electronic energy + Delta-G solvation = -23467.601927 eV Core-core repulsion = 19804.279837 eV Total energy + Delta-G solvation = -3663.322090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.88082 -41.46120 -39.15794 -37.78083 -35.48341 -33.74781 -32.88424 -31.62500 -30.03348 -29.31161 -26.92136 -26.23451 -23.87176 -22.95105 -21.61310 -20.80895 -19.33803 -18.51991 -17.91677 -17.33871 -16.76741 -16.20792 -15.98167 -15.74676 -15.64958 -15.08120 -14.78276 -14.49070 -14.15839 -13.75354 -13.63187 -13.14003 -13.07689 -12.87458 -12.69582 -12.55568 -12.28619 -12.07225 -11.71061 -11.52557 -11.50802 -11.09390 -11.05595 -10.30020 -10.21267 -10.16940 -9.86635 -9.31840 -9.23427 -8.60495 -8.44470 -8.01815 -6.12357 -4.12406 1.01218 1.08455 2.49797 2.68198 2.86830 3.30763 3.38218 3.47033 3.54631 4.01353 4.17859 4.42035 4.51407 4.56919 4.64560 4.85460 4.89091 4.97883 5.11672 5.22866 5.25043 5.28413 5.33855 5.50916 5.61382 5.72446 5.78058 5.83834 5.96301 5.98650 6.30945 6.37389 6.44322 6.69974 7.11709 7.18419 7.19458 7.26832 7.66242 8.14785 8.40755 8.88983 9.49852 11.00210 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.004131 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.771634 B = 6775.598307 C = 7925.207183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.081 0.919 4 C 0.068 3.932 5 N -0.564 5.564 6 C 0.518 3.482 7 O -0.508 6.508 8 C -0.119 4.119 9 C 0.001 3.999 10 C -0.529 4.529 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.261 1.261 18 C 0.115 3.885 19 C -0.134 4.134 20 C -0.100 4.100 21 C -0.150 4.150 22 C 0.089 3.911 23 F -0.133 7.133 24 C 0.054 3.946 25 O -0.304 6.304 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.027 0.973 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.180 0.820 37 H 0.137 0.863 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -4.848 -19.949 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.099 0.901 4 C -0.055 4.055 5 N -0.289 5.289 6 C 0.311 3.689 7 O -0.383 6.383 8 C -0.159 4.159 9 C -0.037 4.037 10 C -0.566 4.566 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.539 5.539 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.185 1.185 18 C 0.019 3.981 19 C -0.153 4.153 20 C -0.119 4.119 21 C -0.170 4.170 22 C 0.069 3.931 23 F -0.112 7.112 24 C 0.006 3.994 25 O -0.219 6.219 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.197 0.803 37 H 0.155 0.845 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.066 -4.849 -19.835 20.820 hybrid contribution 0.744 0.147 -0.045 0.760 sum -3.322 -4.701 -19.880 20.697 Atomic orbital electron populations 1.21771 0.90561 1.03934 1.03819 1.22879 0.96482 0.95595 0.83470 0.90142 1.22853 0.78754 1.03184 1.00689 1.46115 1.07328 1.68363 1.07130 1.21886 0.87307 0.74698 0.85029 1.90432 1.14657 1.49589 1.83608 1.21780 1.01479 1.02501 0.90110 1.19411 0.93662 0.97437 0.93147 1.21036 0.95137 1.46609 0.93859 0.90853 1.24958 0.98753 0.94260 0.95091 1.69899 1.35884 1.46038 1.02059 0.86809 0.85941 0.79323 0.77575 1.20187 1.21315 1.18515 1.17899 0.93504 1.02555 0.84096 1.22285 0.93296 0.98507 1.01242 1.20969 1.00228 0.99679 0.91016 1.20963 0.91128 1.04318 1.00577 1.16793 0.89174 1.07535 0.79617 1.91480 1.76647 1.94407 1.48655 1.18416 0.84331 1.05045 0.91621 1.86076 1.19472 1.73909 1.42400 0.91044 0.89482 0.90826 0.86404 0.89166 0.89195 0.88802 0.95447 0.96206 0.92580 0.80298 0.84494 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.59 37.16 0.36 -0.68 16 2 C 0.07 0.75 3.58 -26.45 -0.09 0.66 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.07 0.74 5.82 -3.32 -0.02 0.72 16 5 N -0.56 -8.25 3.01 -112.34 -0.34 -8.59 16 6 C 0.52 8.99 7.64 -10.99 -0.08 8.91 16 7 O -0.51 -10.20 12.69 5.55 0.07 -10.13 16 8 C -0.12 -2.12 4.13 -27.88 -0.12 -2.23 16 9 C 0.00 0.03 3.34 -27.88 -0.09 -0.06 16 10 C -0.53 -14.39 9.66 -34.44 -0.33 -14.72 16 11 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 14 Si 0.88 21.73 27.47 -169.99 -4.67 17.07 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 18 C 0.11 1.72 6.34 -83.38 -0.53 1.19 16 19 C -0.13 -1.96 9.03 -39.43 -0.36 -2.31 16 20 C -0.10 -1.17 10.04 -39.56 -0.40 -1.57 16 21 C -0.15 -1.70 10.01 -39.51 -0.40 -2.10 16 22 C 0.09 1.19 7.31 -39.28 -0.29 0.91 16 23 F -0.13 -1.83 17.09 2.25 0.04 -1.79 16 24 C 0.05 0.77 6.52 -39.01 -0.25 0.52 16 25 O -0.30 -4.04 9.82 -19.60 -0.19 -4.23 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.12 1.09 6.20 -51.93 -0.32 0.76 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.43 7.47 -51.93 -0.39 1.05 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.03 0.67 7.10 -51.93 -0.37 0.30 16 34 H 0.02 0.47 7.57 -51.92 -0.39 0.08 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.18 2.95 4.91 -53.58 -0.26 2.69 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -32.61 317.78 -6.93 -39.54 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.70 Total: -1.55 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -2.70 Total: -8.84 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.44 Total: -34.86 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.12 Total: -14.36 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.61 -6.93 -39.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292311477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.582 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds