Wall clock time and date at job start Tue Mar 31 2020 07:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.58188 * 2 1 4 4 C 1.53537 * 109.68986 * 120.33476 * 2 1 3 5 5 N 1.47315 * 107.55806 * 178.05690 * 4 2 1 6 6 C 1.34771 * 121.16347 * 137.98615 * 5 4 2 7 7 O 1.21289 * 120.00286 * 175.75396 * 6 5 4 8 8 C 1.50701 * 120.00040 * 355.75697 * 6 5 4 9 9 C 1.53002 * 109.47285 * 184.98083 * 8 6 5 10 10 C 1.50701 * 109.46941 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00426 * 0.02562 * 10 9 8 12 12 C 1.37887 * 119.99606 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99614 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99794 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47306 * 90.00332 * 14 12 10 16 16 H 1.48498 * 109.46791 * 210.00123 * 14 12 10 17 17 H 1.48499 * 109.47355 * 329.99759 * 14 12 10 18 18 C 1.40555 * 117.67394 * 317.96558 * 5 4 2 19 19 C 1.38646 * 120.06560 * 193.64653 * 18 5 4 20 20 C 1.38229 * 119.91973 * 180.30096 * 19 18 5 21 21 C 1.38293 * 120.07718 * 0.03478 * 20 19 18 22 22 C 1.38373 * 120.26418 * 359.89356 * 21 20 19 23 23 F 1.35096 * 119.99116 * 180.02562 * 22 21 20 24 24 C 1.38905 * 120.01253 * 0.03628 * 22 21 20 25 25 O 1.35957 * 119.65717 * 180.12866 * 24 22 21 26 26 H 1.08996 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47008 * 300.00410 * 1 2 3 28 28 H 1.08995 * 109.46812 * 60.00207 * 1 2 3 29 29 H 1.09004 * 109.83231 * 297.54770 * 4 2 1 30 30 H 1.08998 * 109.83797 * 58.51288 * 4 2 1 31 31 H 1.09004 * 109.47384 * 304.98428 * 8 6 5 32 32 H 1.09000 * 109.47231 * 64.98444 * 8 6 5 33 33 H 1.08990 * 109.47211 * 300.00699 * 9 8 6 34 34 H 1.09008 * 109.46770 * 60.00265 * 9 8 6 35 35 H 0.97002 * 119.99934 * 180.02562 * 13 12 10 36 36 H 1.07998 * 120.04189 * 0.28529 * 19 18 5 37 37 H 1.07998 * 119.96270 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.86541 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0473 -0.7301 1.2477 5 7 3.5187 -0.7437 1.1766 6 6 4.2719 -0.5047 2.2683 7 8 5.4796 -0.5967 2.2039 8 6 3.6137 -0.1231 3.5691 9 6 4.6882 0.2111 4.6057 10 6 4.0299 0.5933 5.9064 11 1 2.9528 0.5969 5.9859 12 6 4.8027 0.9382 6.9949 13 7 4.2282 1.2712 8.1301 14 14 6.6656 0.9326 6.8572 15 1 7.1333 2.2707 6.4146 16 1 7.2587 0.6136 8.1807 17 1 7.0856 -0.0912 5.8669 18 6 4.1096 -1.0150 -0.0696 19 6 5.4599 -1.3197 -0.1464 20 6 6.0392 -1.5800 -1.3742 21 6 5.2737 -1.5359 -2.5250 22 6 3.9252 -1.2338 -2.4545 23 9 3.1824 -1.1928 -3.5822 24 6 3.3352 -0.9725 -1.2244 25 8 2.0091 -0.6790 -1.1631 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7254 -0.2020 2.1453 30 1 1.6677 -1.7517 1.2624 31 1 2.9767 0.7474 3.4124 32 1 3.0090 -0.9559 3.9283 33 1 5.3252 -0.6593 4.7624 34 1 5.2929 1.0439 4.2466 35 1 4.7718 1.5143 8.8958 36 1 6.0585 -1.3535 0.7519 37 1 7.0909 -1.8178 -1.4348 38 1 5.7299 -1.7394 -3.4825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292311477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:48 Heat of formation + Delta-G solvation = -101.859195 kcal Electronic energy + Delta-G solvation = -23468.457622 eV Core-core repulsion = 19804.279837 eV Total energy + Delta-G solvation = -3664.177785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.91150 -42.53408 -40.36512 -38.74693 -36.62890 -35.64827 -33.75120 -33.44417 -31.15089 -30.35998 -28.21743 -27.50261 -25.03912 -23.93686 -23.09597 -21.97359 -20.60053 -19.51902 -19.30512 -18.71044 -18.13056 -17.37974 -17.08467 -16.93422 -16.70246 -16.31974 -16.01252 -15.81384 -15.47273 -15.03323 -14.95620 -14.67135 -14.10612 -14.08761 -13.86416 -13.45828 -13.28880 -13.24618 -13.02004 -12.89004 -12.60748 -12.41133 -12.10576 -12.01478 -11.92173 -11.78525 -11.40801 -11.22949 -10.78088 -10.55361 -9.47224 -9.07258 -8.31395 -6.34513 -0.02005 0.06375 1.33677 1.36609 1.38887 1.43219 1.49954 1.96876 2.34777 2.52790 3.03348 3.04866 3.31900 3.41102 3.68379 3.81795 3.83605 3.99297 4.14535 4.17296 4.27567 4.34809 4.38899 4.49739 4.59812 4.75038 4.84282 4.89841 4.96869 5.04306 5.22927 5.28071 5.33099 5.36957 5.39288 5.58693 5.70343 5.98827 6.17496 6.22604 6.71350 6.88218 7.31061 8.83949 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.004131 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.771634 B = 6775.598307 C = 7925.207183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.069 3.931 3 H 0.077 0.923 4 C 0.061 3.939 5 N -0.560 5.560 6 C 0.520 3.480 7 O -0.544 6.544 8 C -0.111 4.111 9 C 0.005 3.995 10 C -0.528 4.528 11 H 0.054 0.946 12 C 0.016 3.984 13 N -0.942 5.942 14 Si 0.934 3.066 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.259 1.259 18 C 0.092 3.908 19 C -0.151 4.151 20 C -0.093 4.093 21 C -0.134 4.134 22 C 0.074 3.926 23 F -0.137 7.137 24 C 0.048 3.952 25 O -0.315 6.315 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.267 0.733 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.548 -5.232 -21.776 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 H 0.094 0.906 4 C -0.060 4.060 5 N -0.284 5.284 6 C 0.313 3.687 7 O -0.421 6.421 8 C -0.150 4.150 9 C -0.033 4.033 10 C -0.566 4.566 11 H 0.072 0.928 12 C -0.182 4.182 13 N -0.583 5.583 14 Si 0.759 3.241 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.183 1.183 18 C -0.003 4.003 19 C -0.171 4.171 20 C -0.112 4.112 21 C -0.153 4.153 22 C 0.054 3.946 23 F -0.115 7.115 24 C 0.000 4.000 25 O -0.230 6.230 26 H 0.095 0.905 27 H 0.127 0.873 28 H 0.094 0.906 29 H 0.154 0.846 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.177 0.823 37 H 0.184 0.816 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.103 -5.238 -21.696 22.693 hybrid contribution 0.668 0.250 0.443 0.839 sum -3.436 -4.988 -21.253 22.099 Atomic orbital electron populations 1.21812 0.87986 1.04660 1.04997 1.23131 0.98311 0.94949 0.82317 0.90551 1.23179 0.76584 1.04422 1.01804 1.46013 1.08629 1.67350 1.06447 1.21618 0.86891 0.74721 0.85514 1.90439 1.16014 1.51389 1.84302 1.21589 1.00050 1.04149 0.89234 1.19251 0.94739 0.96385 0.92954 1.21373 0.94519 1.45299 0.95383 0.92760 1.25759 1.03101 0.94371 0.94966 1.70012 1.37541 1.47778 1.02937 0.85886 0.80944 0.79533 0.77719 1.19479 1.20645 1.18282 1.18026 0.93928 1.04036 0.84313 1.22254 0.93347 0.99684 1.01806 1.21264 1.01602 0.98349 0.89940 1.21317 0.90149 1.02047 1.01819 1.17095 0.90032 1.08130 0.79341 1.91470 1.76896 1.94498 1.48667 1.18551 0.84730 1.05054 0.91707 1.86075 1.19008 1.74155 1.43778 0.90537 0.87344 0.90576 0.84615 0.87920 0.87131 0.87054 0.96710 0.97085 0.92399 0.82270 0.81600 0.81020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.59 71.98 0.69 -0.96 16 2 C 0.07 1.32 3.58 30.78 0.11 1.43 16 3 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 4 C 0.06 1.22 5.82 86.40 0.50 1.72 16 5 N -0.56 -15.90 3.01 -627.72 -1.89 -17.79 16 6 C 0.52 17.79 7.64 87.66 0.67 18.46 16 7 O -0.54 -22.02 12.69 -3.06 -0.04 -22.05 16 8 C -0.11 -3.82 4.13 29.85 0.12 -3.70 16 9 C 0.00 0.22 3.34 29.85 0.10 0.32 16 10 C -0.53 -28.84 9.66 25.60 0.25 -28.59 16 11 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 12 C 0.02 0.92 5.47 84.66 0.46 1.38 16 13 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 14 Si 0.93 44.98 27.47 68.60 1.88 46.86 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 17 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 18 C 0.09 2.69 6.34 38.05 0.24 2.93 16 19 C -0.15 -4.34 9.03 22.37 0.20 -4.14 16 20 C -0.09 -1.99 10.04 22.28 0.22 -1.77 16 21 C -0.13 -2.68 10.01 22.32 0.22 -2.46 16 22 C 0.07 1.87 7.31 22.46 0.16 2.03 16 23 F -0.14 -3.52 17.09 44.97 0.77 -2.75 16 24 C 0.05 1.31 6.52 22.64 0.15 1.46 16 25 O -0.32 -8.00 9.82 -93.06 -0.91 -8.91 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 0.85 8.14 -2.38 -0.02 0.84 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.14 2.16 6.20 -2.38 -0.01 2.15 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.11 3.33 7.47 -2.39 -0.02 3.31 16 32 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 33 H 0.01 0.71 7.10 -2.39 -0.02 0.70 16 34 H 0.01 0.52 7.57 -2.38 -0.02 0.50 16 35 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 36 H 0.16 5.33 4.91 -20.14 -0.10 5.23 16 37 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -71.13 317.78 5.16 -65.97 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.94 Total: 7.50 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 4.11 Total: -11.88 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.59 Total: -74.73 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.95 Total: -30.96 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.77 Total: -2.75 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -71.13 5.16 -65.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292311477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.887 kcal (2) G-P(sol) polarization free energy of solvation -71.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds