Wall clock time and date at job start Tue Mar 31 2020 07:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.69827 * 2 1 4 4 C 1.53540 * 109.58217 * 239.64915 * 2 1 3 5 5 N 1.47306 * 107.57076 * 182.01542 * 4 2 1 6 6 C 1.34776 * 121.15145 * 221.92831 * 5 4 2 7 7 O 1.21298 * 119.99752 * 174.21181 * 6 5 4 8 8 C 1.50698 * 120.00314 * 354.21574 * 6 5 4 9 9 C 1.52998 * 109.46992 * 185.42883 * 8 6 5 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 8 6 11 11 H 1.07991 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99800 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99859 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00131 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47448 * 89.99652 * 14 12 10 16 16 H 1.48501 * 109.47078 * 209.99839 * 14 12 10 17 17 H 1.48502 * 109.46990 * 329.99499 * 14 12 10 18 18 C 1.40557 * 117.69149 * 41.95793 * 5 4 2 19 19 C 1.38643 * 120.07358 * 166.40220 * 18 5 4 20 20 C 1.38224 * 119.92243 * 180.10396 * 19 18 5 21 21 C 1.38293 * 120.07797 * 359.37759 * 20 19 18 22 22 C 1.38371 * 120.25796 * 0.65319 * 21 20 19 23 23 F 1.35104 * 119.98830 * 179.71755 * 22 21 20 24 24 C 1.38898 * 120.01874 * 359.69766 * 22 21 20 25 25 O 1.35953 * 119.66034 * 179.81058 * 24 22 21 26 26 H 1.09003 * 109.47414 * 180.34694 * 1 2 3 27 27 H 1.08998 * 109.47176 * 300.34709 * 1 2 3 28 28 H 1.09004 * 109.47203 * 60.34956 * 1 2 3 29 29 H 1.08995 * 109.83953 * 62.50565 * 4 2 1 30 30 H 1.09000 * 109.89291 * 301.56452 * 4 2 1 31 31 H 1.08990 * 109.47225 * 305.43164 * 8 6 5 32 32 H 1.09002 * 109.47125 * 65.43044 * 8 6 5 33 33 H 1.09000 * 109.47280 * 299.99993 * 9 8 6 34 34 H 1.09002 * 109.47054 * 60.00118 * 9 8 6 35 35 H 0.97004 * 119.99757 * 180.02562 * 13 12 10 36 36 H 1.08006 * 120.03474 * 359.82979 * 19 18 5 37 37 H 1.08006 * 119.96241 * 179.67643 * 20 19 18 38 38 H 1.07994 * 119.86952 * 180.35019 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0446 -0.7310 -1.2483 5 7 3.5159 -0.7476 -1.1790 6 6 4.2681 -0.5117 -2.2722 7 8 5.4739 -0.4263 -2.1718 8 6 3.6111 -0.3538 -3.6192 9 6 4.6870 -0.2312 -4.7001 10 6 4.0300 -0.0727 -6.0471 11 1 2.9529 -0.0610 -6.1245 12 6 4.8041 0.0573 -7.1806 13 7 4.2308 0.1952 -8.3561 14 14 6.6672 0.0363 -7.0468 15 1 7.1569 -1.3598 -7.1736 16 1 7.2507 0.8660 -8.1315 17 1 7.0751 0.5862 -5.7291 18 6 4.1081 -1.0187 0.0665 19 6 5.4581 -1.3252 0.1420 20 6 6.0368 -1.5934 1.3683 21 6 5.2737 -1.5436 2.5205 22 6 3.9257 -1.2389 2.4514 23 9 3.1841 -1.1974 3.5800 24 6 3.3350 -0.9753 1.2223 25 8 2.0091 -0.6805 1.1624 26 1 -0.3634 -1.0276 0.0062 27 1 -0.3633 0.5192 0.8868 28 1 -0.3634 0.5084 -0.8931 29 1 1.7226 -0.2024 -2.1455 30 1 1.6634 -1.7520 -1.2638 31 1 2.9880 -1.2242 -3.8238 32 1 2.9926 0.5438 -3.6188 33 1 5.3102 0.6393 -4.4955 34 1 5.3055 -1.1288 -4.7004 35 1 4.7754 0.2863 -9.1536 36 1 6.0559 -1.3587 -0.7569 37 1 7.0873 -1.8373 1.4272 38 1 5.7305 -1.7482 3.4774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292311480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:54 Heat of formation + Delta-G solvation = -84.181067 kcal Electronic energy + Delta-G solvation = -23455.962600 eV Core-core repulsion = 19792.551396 eV Total energy + Delta-G solvation = -3663.411204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.88555 -41.45699 -39.14721 -37.79160 -35.47866 -33.73711 -32.89243 -31.61341 -30.05301 -29.31790 -26.92058 -26.22831 -23.87255 -22.96030 -21.60068 -20.82021 -19.31783 -18.52014 -17.88545 -17.33783 -16.77212 -16.23734 -15.97860 -15.75476 -15.65588 -15.05999 -14.79146 -14.49703 -14.16206 -13.75725 -13.62093 -13.14692 -13.09788 -12.86351 -12.62747 -12.61184 -12.34708 -12.00628 -11.71097 -11.53691 -11.50214 -11.08943 -11.05665 -10.30805 -10.21162 -10.17263 -9.87329 -9.33662 -9.28818 -8.60322 -8.44399 -8.01125 -6.12144 -4.12194 1.00205 1.07550 2.50043 2.67176 2.86533 3.30801 3.38264 3.47174 3.54504 4.01433 4.17552 4.42184 4.51135 4.56540 4.63520 4.85108 4.88035 4.97032 5.11180 5.23056 5.24456 5.28172 5.32770 5.50219 5.61104 5.73336 5.77807 5.83790 5.96051 5.97841 6.29275 6.36402 6.44654 6.67098 7.11501 7.17830 7.18752 7.27285 7.66304 8.13989 8.41036 8.89254 9.50078 11.00423 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.004111 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.796126 B = 6810.168212 C = 7973.428207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.080 0.920 4 C 0.069 3.931 5 N -0.565 5.565 6 C 0.517 3.483 7 O -0.508 6.508 8 C -0.119 4.119 9 C 0.001 3.999 10 C -0.528 4.528 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.901 5.901 14 Si 0.876 3.124 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.261 1.261 18 C 0.117 3.883 19 C -0.127 4.127 20 C -0.099 4.099 21 C -0.150 4.150 22 C 0.090 3.910 23 F -0.133 7.133 24 C 0.054 3.946 25 O -0.304 6.304 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.027 0.973 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.172 0.828 37 H 0.138 0.862 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 -2.456 20.559 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.098 0.902 4 C -0.054 4.054 5 N -0.291 5.291 6 C 0.310 3.690 7 O -0.383 6.383 8 C -0.159 4.159 9 C -0.037 4.037 10 C -0.566 4.566 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.539 5.539 14 Si 0.703 3.297 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.185 1.185 18 C 0.021 3.979 19 C -0.147 4.147 20 C -0.118 4.118 21 C -0.170 4.170 22 C 0.070 3.930 23 F -0.112 7.112 24 C 0.005 3.995 25 O -0.218 6.218 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.189 0.811 37 H 0.155 0.845 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.088 -2.389 20.458 20.998 hybrid contribution 0.758 0.045 -0.011 0.759 sum -3.330 -2.344 20.446 20.848 Atomic orbital electron populations 1.21770 0.90549 1.03982 1.03781 1.22875 0.96477 0.95527 0.83492 0.90191 1.22827 0.78783 1.03215 1.00553 1.46154 1.07320 1.68600 1.07022 1.21891 0.87378 0.73980 0.85786 1.90513 1.14747 1.47670 1.85330 1.21777 1.01487 1.03496 0.89096 1.19411 0.93647 0.97816 0.92785 1.21036 0.95128 1.51113 0.89348 0.90851 1.24956 0.98755 0.94181 0.95172 1.69901 1.35868 1.49877 0.98245 0.86811 0.85949 0.78547 0.78356 1.20167 1.21317 1.18524 1.17862 0.93518 1.02308 0.84174 1.21954 0.93217 0.98693 1.00849 1.20935 1.00260 0.99626 0.90962 1.20949 0.91135 1.04345 1.00553 1.16794 0.89185 1.07442 0.79605 1.91484 1.76703 1.94401 1.48585 1.18398 0.84388 1.05088 0.91577 1.86081 1.19490 1.73834 1.42431 0.90991 0.90841 0.89508 0.86548 0.89143 0.89093 0.88941 0.95478 0.96200 0.92583 0.81087 0.84461 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.58 37.16 0.36 -0.67 16 2 C 0.07 0.75 3.59 -26.45 -0.09 0.66 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.07 0.75 5.69 -3.32 -0.02 0.73 16 5 N -0.57 -8.28 3.01 -112.34 -0.34 -8.62 16 6 C 0.52 9.00 7.59 -10.99 -0.08 8.92 16 7 O -0.51 -10.27 12.85 5.54 0.07 -10.20 16 8 C -0.12 -2.12 4.12 -27.88 -0.11 -2.24 16 9 C 0.00 0.03 3.35 -27.88 -0.09 -0.06 16 10 C -0.53 -14.41 9.66 -34.44 -0.33 -14.74 16 11 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 14 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 18 C 0.12 1.74 6.33 -83.38 -0.53 1.22 16 19 C -0.13 -1.86 8.94 -39.44 -0.35 -2.21 16 20 C -0.10 -1.16 10.04 -39.57 -0.40 -1.55 16 21 C -0.15 -1.69 10.01 -39.51 -0.40 -2.08 16 22 C 0.09 1.20 7.31 -39.29 -0.29 0.91 16 23 F -0.13 -1.81 17.09 2.25 0.04 -1.77 16 24 C 0.05 0.76 6.52 -39.01 -0.25 0.51 16 25 O -0.30 -4.02 9.82 -19.59 -0.19 -4.21 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.12 1.07 6.43 -51.93 -0.33 0.73 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 32 H 0.09 1.49 7.62 -51.93 -0.40 1.09 16 33 H 0.03 0.66 7.10 -51.93 -0.37 0.30 16 34 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.17 2.81 5.16 -52.57 -0.27 2.54 16 37 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -32.74 318.23 -6.94 -39.68 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.73 Total: -1.77 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.69 Total: -8.68 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.44 Total: -34.92 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.12 Total: -14.41 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.74 -6.94 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292311480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.502 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds