Wall clock time and date at job start Tue Mar 31 2020 07:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.69827 * 2 1 4 4 C 1.53540 * 109.58217 * 239.64915 * 2 1 3 5 5 N 1.47306 * 107.57076 * 182.01542 * 4 2 1 6 6 C 1.34776 * 121.15145 * 221.92831 * 5 4 2 7 7 O 1.21298 * 119.99752 * 174.21181 * 6 5 4 8 8 C 1.50698 * 120.00314 * 354.21574 * 6 5 4 9 9 C 1.52998 * 109.46992 * 185.42883 * 8 6 5 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 8 6 11 11 H 1.07991 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99800 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99859 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00131 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47448 * 89.99652 * 14 12 10 16 16 H 1.48501 * 109.47078 * 209.99839 * 14 12 10 17 17 H 1.48502 * 109.46990 * 329.99499 * 14 12 10 18 18 C 1.40557 * 117.69149 * 41.95793 * 5 4 2 19 19 C 1.38643 * 120.07358 * 166.40220 * 18 5 4 20 20 C 1.38224 * 119.92243 * 180.10396 * 19 18 5 21 21 C 1.38293 * 120.07797 * 359.37759 * 20 19 18 22 22 C 1.38371 * 120.25796 * 0.65319 * 21 20 19 23 23 F 1.35104 * 119.98830 * 179.71755 * 22 21 20 24 24 C 1.38898 * 120.01874 * 359.69766 * 22 21 20 25 25 O 1.35953 * 119.66034 * 179.81058 * 24 22 21 26 26 H 1.09003 * 109.47414 * 180.34694 * 1 2 3 27 27 H 1.08998 * 109.47176 * 300.34709 * 1 2 3 28 28 H 1.09004 * 109.47203 * 60.34956 * 1 2 3 29 29 H 1.08995 * 109.83953 * 62.50565 * 4 2 1 30 30 H 1.09000 * 109.89291 * 301.56452 * 4 2 1 31 31 H 1.08990 * 109.47225 * 305.43164 * 8 6 5 32 32 H 1.09002 * 109.47125 * 65.43044 * 8 6 5 33 33 H 1.09000 * 109.47280 * 299.99993 * 9 8 6 34 34 H 1.09002 * 109.47054 * 60.00118 * 9 8 6 35 35 H 0.97004 * 119.99757 * 180.02562 * 13 12 10 36 36 H 1.08006 * 120.03474 * 359.82979 * 19 18 5 37 37 H 1.08006 * 119.96241 * 179.67643 * 20 19 18 38 38 H 1.07994 * 119.86952 * 180.35019 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0446 -0.7310 -1.2483 5 7 3.5159 -0.7476 -1.1790 6 6 4.2681 -0.5117 -2.2722 7 8 5.4739 -0.4263 -2.1718 8 6 3.6111 -0.3538 -3.6192 9 6 4.6870 -0.2312 -4.7001 10 6 4.0300 -0.0727 -6.0471 11 1 2.9529 -0.0610 -6.1245 12 6 4.8041 0.0573 -7.1806 13 7 4.2308 0.1952 -8.3561 14 14 6.6672 0.0363 -7.0468 15 1 7.1569 -1.3598 -7.1736 16 1 7.2507 0.8660 -8.1315 17 1 7.0751 0.5862 -5.7291 18 6 4.1081 -1.0187 0.0665 19 6 5.4581 -1.3252 0.1420 20 6 6.0368 -1.5934 1.3683 21 6 5.2737 -1.5436 2.5205 22 6 3.9257 -1.2389 2.4514 23 9 3.1841 -1.1974 3.5800 24 6 3.3350 -0.9753 1.2223 25 8 2.0091 -0.6805 1.1624 26 1 -0.3634 -1.0276 0.0062 27 1 -0.3633 0.5192 0.8868 28 1 -0.3634 0.5084 -0.8931 29 1 1.7226 -0.2024 -2.1455 30 1 1.6634 -1.7520 -1.2638 31 1 2.9880 -1.2242 -3.8238 32 1 2.9926 0.5438 -3.6188 33 1 5.3102 0.6393 -4.4955 34 1 5.3055 -1.1288 -4.7004 35 1 4.7754 0.2863 -9.1536 36 1 6.0559 -1.3587 -0.7569 37 1 7.0873 -1.8373 1.4272 38 1 5.7305 -1.7482 3.4774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292311480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:53 Heat of formation + Delta-G solvation = -103.978134 kcal Electronic energy + Delta-G solvation = -23456.821065 eV Core-core repulsion = 19792.551396 eV Total energy + Delta-G solvation = -3664.269669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.91068 -42.52776 -40.35892 -38.75344 -36.62591 -35.64523 -33.75090 -33.44175 -31.16164 -30.36590 -28.22132 -27.49396 -25.04053 -23.94277 -23.08160 -21.98341 -20.58014 -19.51374 -19.30863 -18.66612 -18.14498 -17.39672 -17.11688 -16.93230 -16.71047 -16.26294 -16.04320 -15.81466 -15.48843 -15.02487 -14.95675 -14.65103 -14.14343 -14.10058 -13.81212 -13.48293 -13.30218 -13.21961 -13.03447 -12.86165 -12.61037 -12.41410 -12.10923 -12.00126 -11.92448 -11.79231 -11.41079 -11.25216 -10.78288 -10.63712 -9.46795 -9.06675 -8.31541 -6.34727 -0.03017 0.06096 1.33553 1.36530 1.39838 1.41628 1.49821 1.96890 2.34638 2.52837 3.03213 3.04676 3.31640 3.42046 3.67860 3.81535 3.83128 3.98782 4.14389 4.17977 4.26748 4.33149 4.38316 4.50651 4.59727 4.74945 4.84262 4.89589 4.96617 5.03642 5.22749 5.27549 5.31350 5.36124 5.39581 5.58483 5.68339 5.98417 6.16482 6.22485 6.70969 6.87100 7.30885 8.83812 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.004111 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.796126 B = 6810.168212 C = 7973.428207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.070 3.930 3 H 0.076 0.924 4 C 0.062 3.938 5 N -0.561 5.561 6 C 0.519 3.481 7 O -0.545 6.545 8 C -0.111 4.111 9 C 0.005 3.995 10 C -0.528 4.528 11 H 0.054 0.946 12 C 0.016 3.984 13 N -0.942 5.942 14 Si 0.935 3.065 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.259 1.259 18 C 0.093 3.907 19 C -0.145 4.145 20 C -0.092 4.092 21 C -0.134 4.134 22 C 0.075 3.925 23 F -0.136 7.136 24 C 0.048 3.952 25 O -0.315 6.315 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.267 0.733 36 H 0.152 0.848 37 H 0.167 0.833 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.573 -2.783 22.409 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 H 0.094 0.906 4 C -0.059 4.059 5 N -0.286 5.286 6 C 0.312 3.688 7 O -0.422 6.422 8 C -0.150 4.150 9 C -0.033 4.033 10 C -0.566 4.566 11 H 0.072 0.928 12 C -0.182 4.182 13 N -0.583 5.583 14 Si 0.759 3.241 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.184 1.184 18 C -0.002 4.002 19 C -0.165 4.165 20 C -0.110 4.110 21 C -0.153 4.153 22 C 0.055 3.945 23 F -0.115 7.115 24 C -0.001 4.001 25 O -0.230 6.230 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.153 0.847 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.169 0.831 37 H 0.184 0.816 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.127 -2.723 22.341 22.882 hybrid contribution 0.680 0.136 -0.504 0.858 sum -3.446 -2.587 21.837 22.258 Atomic orbital electron populations 1.21812 0.87957 1.04670 1.05008 1.23128 0.98312 0.94882 0.82301 0.90571 1.23161 0.76605 1.04440 1.01737 1.46047 1.08628 1.67573 1.06357 1.21613 0.86933 0.73989 0.86259 1.90512 1.16141 1.49619 1.85941 1.21584 1.00046 1.05370 0.87997 1.19251 0.94729 0.96680 0.92662 1.21371 0.94498 1.49617 0.91102 0.92781 1.25759 1.03125 0.94295 0.95021 1.70014 1.37533 1.51678 0.99047 0.85883 0.80921 0.78895 0.78362 1.19394 1.20639 1.18355 1.17992 0.93949 1.03824 0.84388 1.21942 0.93261 0.99886 1.01398 1.21234 1.01629 0.98296 0.89877 1.21308 0.90151 1.02036 1.01794 1.17094 0.90044 1.08028 0.79322 1.91474 1.76950 1.94490 1.48589 1.18535 0.84786 1.05079 0.91661 1.86080 1.19024 1.74083 1.43811 0.90549 0.90551 0.87329 0.84713 0.87949 0.87263 0.86996 0.96784 0.97034 0.92394 0.83113 0.81557 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.58 71.98 0.69 -0.94 16 2 C 0.07 1.33 3.59 30.77 0.11 1.44 16 3 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.06 1.23 5.69 86.41 0.49 1.72 16 5 N -0.56 -15.97 3.01 -627.73 -1.89 -17.87 16 6 C 0.52 17.85 7.59 87.66 0.67 18.52 16 7 O -0.54 -22.23 12.85 -3.08 -0.04 -22.26 16 8 C -0.11 -3.84 4.12 29.85 0.12 -3.71 16 9 C 0.00 0.22 3.35 29.85 0.10 0.32 16 10 C -0.53 -28.92 9.66 25.60 0.25 -28.68 16 11 H 0.05 3.10 7.99 -2.92 -0.02 3.08 16 12 C 0.02 0.92 5.47 84.66 0.46 1.38 16 13 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 14 Si 0.93 45.04 27.47 68.60 1.88 46.92 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.26 -12.33 6.54 99.48 0.65 -11.68 16 18 C 0.09 2.73 6.33 38.05 0.24 2.97 16 19 C -0.14 -4.16 8.94 22.36 0.20 -3.96 16 20 C -0.09 -1.95 10.04 22.28 0.22 -1.73 16 21 C -0.13 -2.65 10.01 22.31 0.22 -2.43 16 22 C 0.08 1.88 7.31 22.46 0.16 2.05 16 23 F -0.14 -3.49 17.09 44.97 0.77 -2.72 16 24 C 0.05 1.30 6.52 22.64 0.15 1.45 16 25 O -0.32 -7.96 9.82 -93.03 -0.91 -8.87 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.13 2.14 6.43 -2.39 -0.02 2.12 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 3.37 8.08 -2.39 -0.02 3.35 16 32 H 0.11 3.42 7.62 -2.39 -0.02 3.40 16 33 H 0.01 0.68 7.10 -2.39 -0.02 0.66 16 34 H 0.01 0.54 7.57 -2.39 -0.02 0.53 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.15 5.04 5.16 -4.34 -0.02 5.02 16 37 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -71.46 318.23 5.21 -66.25 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.02 Total: 7.16 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.09 Total: -11.59 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -1.59 Total: -74.88 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.95 Total: -31.14 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.77 Total: -2.72 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -71.46 5.21 -66.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292311480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.731 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds