Wall clock time and date at job start Tue Mar 31 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00137 * 2 1 4 4 N 1.46498 * 109.47203 * 126.17940 * 3 2 1 5 5 C 1.46496 * 119.99990 * 277.31549 * 4 3 2 6 6 C 1.50704 * 109.46871 * 270.00147 * 5 4 3 7 7 H 1.08002 * 120.00287 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99743 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00264 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99888 * 180.02562 * 8 6 5 11 11 H 1.48509 * 109.47114 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47313 * 119.99779 * 10 8 6 13 13 H 1.48496 * 109.47319 * 239.99872 * 10 8 6 14 14 C 1.34774 * 119.99952 * 97.31508 * 4 3 2 15 15 O 1.21555 * 119.99888 * 185.61762 * 14 4 3 16 16 C 1.47847 * 120.00289 * 5.61634 * 14 4 3 17 17 C 1.39600 * 120.13591 * 131.26658 * 16 14 4 18 18 C 1.37936 * 119.90625 * 180.02562 * 17 16 14 19 19 C 1.38342 * 120.17688 * 359.72094 * 18 17 16 20 20 C 1.50701 * 119.86904 * 180.30205 * 19 18 17 21 21 O 1.42895 * 109.47027 * 0.24968 * 20 19 18 22 22 C 1.38556 * 120.26467 * 0.55398 * 19 18 17 23 23 F 1.35098 * 119.95162 * 179.72383 * 22 19 18 24 24 C 1.38207 * 120.09137 * 359.45045 * 22 19 18 25 25 H 1.07997 * 120.00411 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99763 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99763 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47085 * 6.17555 * 3 2 1 29 29 H 1.09008 * 109.46729 * 246.17609 * 3 2 1 30 30 H 1.09005 * 109.47193 * 29.99592 * 5 4 3 31 31 H 1.08998 * 109.47472 * 150.00068 * 5 4 3 32 32 H 0.96997 * 119.99920 * 180.02562 * 9 8 6 33 33 H 1.08005 * 120.04251 * 0.04510 * 17 16 14 34 34 H 1.08005 * 119.91318 * 179.97438 * 18 17 16 35 35 H 1.08999 * 109.47243 * 120.25416 * 20 19 18 36 36 H 1.09007 * 109.47010 * 240.25443 * 20 19 18 37 37 H 0.96703 * 113.99597 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.08680 * 180.25542 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0138 1.3203 1.1149 5 6 2.5607 1.6880 2.4586 6 6 2.7031 3.1765 2.6469 7 1 3.0925 3.7874 1.8459 8 6 2.3371 3.7582 3.8422 9 7 1.8633 3.0143 4.8177 10 14 2.5128 5.6033 4.0754 11 1 3.0652 6.2084 2.8367 12 1 1.1818 6.1947 4.3647 13 1 3.4318 5.8735 5.2101 14 6 4.3049 0.9960 0.9043 15 8 5.0708 0.9091 1.8442 16 6 4.7897 0.7460 -0.4699 17 6 5.9563 1.3633 -0.9247 18 6 6.4041 1.1271 -2.2078 19 6 5.7033 0.2756 -3.0431 20 6 6.2025 0.0172 -4.4414 21 8 7.4066 0.7545 -4.6611 22 6 4.5415 -0.3365 -2.6011 23 9 3.8592 -1.1625 -3.4241 24 6 4.0829 -0.1076 -1.3176 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3604 2.1306 0.1106 29 1 2.6047 1.4121 -0.9402 30 1 1.5151 1.4049 2.5796 31 1 3.1662 1.1683 3.2011 32 1 1.6055 3.4237 5.6584 33 1 6.5076 2.0247 -0.2726 34 1 7.3064 1.6050 -2.5599 35 1 6.4005 -1.0475 -4.5655 36 1 5.4469 0.3326 -5.1610 37 1 7.7854 0.6352 -5.5429 38 1 3.1795 -0.5879 -0.9718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293938950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:25 Heat of formation + Delta-G solvation = -73.395633 kcal Electronic energy + Delta-G solvation = -23220.507059 eV Core-core repulsion = 19557.563547 eV Total energy + Delta-G solvation = -3662.943512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.01801 -40.04587 -38.36334 -36.73299 -35.83291 -33.27579 -32.24845 -31.76615 -30.63592 -27.93168 -26.57325 -25.44483 -23.30279 -22.88590 -21.64024 -20.19514 -19.09620 -17.86192 -17.27578 -16.57064 -16.41766 -16.08303 -16.00354 -15.51262 -15.43267 -14.90656 -14.68025 -14.38100 -14.26556 -13.87408 -13.31216 -13.06836 -12.80698 -12.50500 -12.33803 -12.02297 -11.67586 -11.46853 -11.37027 -11.28148 -11.08295 -10.84692 -10.67467 -10.59947 -10.21595 -9.68090 -9.27453 -9.17850 -8.85469 -8.66065 -8.45632 -7.76971 -6.06742 -4.11882 0.85475 1.14908 2.40654 3.13115 3.28698 3.36428 3.40070 3.61036 3.73406 3.89103 4.21346 4.42235 4.55776 4.77411 4.87352 5.02468 5.09122 5.16001 5.21061 5.27912 5.29551 5.42616 5.58343 5.73337 5.92820 5.99246 6.02232 6.17144 6.21300 6.36778 6.73911 6.77189 6.87237 7.04580 7.25444 7.40512 7.47952 7.89369 8.19461 8.28897 8.81429 8.97702 9.53303 11.01469 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.004377 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.904169 B = 6395.854388 C = 7314.895587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.175 4.175 3 C 0.127 3.873 4 N -0.583 5.583 5 C 0.246 3.754 6 C -0.529 4.529 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.547 3.453 15 O -0.529 6.529 16 C -0.083 4.083 17 C -0.083 4.083 18 C -0.073 4.073 19 C -0.121 4.121 20 C 0.122 3.878 21 O -0.566 6.566 22 C 0.094 3.906 23 F -0.139 7.139 24 C -0.136 4.136 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.384 0.616 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -6.733 -19.608 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.194 4.194 3 C 0.004 3.996 4 N -0.312 5.312 5 C 0.127 3.873 6 C -0.568 4.568 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.333 3.667 15 O -0.406 6.406 16 C -0.086 4.086 17 C -0.101 4.101 18 C -0.091 4.091 19 C -0.122 4.122 20 C 0.044 3.956 21 O -0.372 6.372 22 C 0.075 3.925 23 F -0.117 7.117 24 C -0.155 4.155 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.232 0.768 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.995 -6.591 -18.291 19.849 hybrid contribution -0.144 0.587 -0.494 0.780 sum 3.850 -6.005 -18.786 20.094 Atomic orbital electron populations 1.23838 0.95717 1.01942 0.99643 1.23407 0.96468 0.98755 1.00761 1.20788 0.92882 0.95479 0.90492 1.48176 1.06686 1.64781 1.11600 1.19353 0.95611 0.95769 0.76576 1.21466 1.43149 0.92456 0.99734 0.92296 1.24927 0.95003 0.98479 0.95583 1.69941 1.43187 1.35409 1.04623 0.86442 0.77699 0.85026 0.78266 1.19755 1.20935 1.20834 1.18118 0.82927 0.78312 0.87318 1.90781 1.55000 1.51759 1.43081 1.20151 0.95784 0.97777 0.94908 1.21345 0.94479 0.98661 0.95661 1.20816 0.99738 0.96321 0.92259 1.19791 0.95171 1.00270 0.96943 1.20725 0.86746 0.95267 0.92814 1.86436 1.40868 1.71517 1.38415 1.17171 0.92121 0.94130 0.89088 1.91482 1.78973 1.69768 1.71493 1.21663 1.01580 1.00328 0.91883 0.88576 0.88105 0.87547 0.89410 0.90023 0.94597 0.93550 0.92717 0.84294 0.83661 0.91920 0.91877 0.76819 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 14.32 29.01 0.42 -1.86 16 2 C -0.17 -2.55 8.56 -36.03 -0.31 -2.86 16 3 C 0.13 2.13 5.34 -5.19 -0.03 2.11 16 4 N -0.58 -12.46 2.45 -177.55 -0.43 -12.90 16 5 C 0.25 6.41 5.21 -5.19 -0.03 6.38 16 6 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 7 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 10 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.55 11.75 7.23 -12.33 -0.09 11.66 16 15 O -0.53 -13.53 16.58 5.32 0.09 -13.44 16 16 C -0.08 -1.40 4.96 -104.97 -0.52 -1.92 16 17 C -0.08 -1.25 9.72 -39.18 -0.38 -1.63 16 18 C -0.07 -0.94 9.36 -39.65 -0.37 -1.31 16 19 C -0.12 -1.46 5.89 -104.47 -0.62 -2.07 16 20 C 0.12 1.08 7.00 36.01 0.25 1.34 16 21 O -0.57 -4.69 12.12 -35.23 -0.43 -5.12 16 22 C 0.09 1.22 7.24 -39.48 -0.29 0.93 16 23 F -0.14 -1.69 16.79 2.25 0.04 -1.66 16 24 C -0.14 -1.95 7.46 -39.11 -0.29 -2.25 16 25 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 26 H 0.10 1.29 7.85 -52.48 -0.41 0.88 16 27 H 0.11 1.47 6.51 -52.48 -0.34 1.13 16 28 H 0.09 1.51 7.78 -51.93 -0.40 1.10 16 29 H 0.08 1.22 5.26 -51.92 -0.27 0.95 16 30 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.05 1.37 7.35 -51.93 -0.38 0.98 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 34 H 0.15 1.67 6.99 -52.48 -0.37 1.30 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 37 H 0.38 1.25 9.12 45.56 0.42 1.66 16 38 H 0.15 2.06 4.14 -52.49 -0.22 1.85 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -33.51 330.82 -6.34 -39.85 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.64 Total: 2.26 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.67 Total: -5.02 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.30 Total: -38.55 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.34 Total: -18.56 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.51 -6.34 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293938950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.546 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds