Wall clock time and date at job start Tue Mar 31 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00137 * 2 1 4 4 N 1.46498 * 109.47203 * 126.17940 * 3 2 1 5 5 C 1.46496 * 119.99990 * 277.31549 * 4 3 2 6 6 C 1.50704 * 109.46871 * 270.00147 * 5 4 3 7 7 H 1.08002 * 120.00287 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99743 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00264 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99888 * 180.02562 * 8 6 5 11 11 H 1.48509 * 109.47114 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47313 * 119.99779 * 10 8 6 13 13 H 1.48496 * 109.47319 * 239.99872 * 10 8 6 14 14 C 1.34774 * 119.99952 * 97.31508 * 4 3 2 15 15 O 1.21555 * 119.99888 * 185.61762 * 14 4 3 16 16 C 1.47847 * 120.00289 * 5.61634 * 14 4 3 17 17 C 1.39600 * 120.13591 * 131.26658 * 16 14 4 18 18 C 1.37936 * 119.90625 * 180.02562 * 17 16 14 19 19 C 1.38342 * 120.17688 * 359.72094 * 18 17 16 20 20 C 1.50701 * 119.86904 * 180.30205 * 19 18 17 21 21 O 1.42895 * 109.47027 * 0.24968 * 20 19 18 22 22 C 1.38556 * 120.26467 * 0.55398 * 19 18 17 23 23 F 1.35098 * 119.95162 * 179.72383 * 22 19 18 24 24 C 1.38207 * 120.09137 * 359.45045 * 22 19 18 25 25 H 1.07997 * 120.00411 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99763 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99763 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47085 * 6.17555 * 3 2 1 29 29 H 1.09008 * 109.46729 * 246.17609 * 3 2 1 30 30 H 1.09005 * 109.47193 * 29.99592 * 5 4 3 31 31 H 1.08998 * 109.47472 * 150.00068 * 5 4 3 32 32 H 0.96997 * 119.99920 * 180.02562 * 9 8 6 33 33 H 1.08005 * 120.04251 * 0.04510 * 17 16 14 34 34 H 1.08005 * 119.91318 * 179.97438 * 18 17 16 35 35 H 1.08999 * 109.47243 * 120.25416 * 20 19 18 36 36 H 1.09007 * 109.47010 * 240.25443 * 20 19 18 37 37 H 0.96703 * 113.99597 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.08680 * 180.25542 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0138 1.3203 1.1149 5 6 2.5607 1.6880 2.4586 6 6 2.7031 3.1765 2.6469 7 1 3.0925 3.7874 1.8459 8 6 2.3371 3.7582 3.8422 9 7 1.8633 3.0143 4.8177 10 14 2.5128 5.6033 4.0754 11 1 3.0652 6.2084 2.8367 12 1 1.1818 6.1947 4.3647 13 1 3.4318 5.8735 5.2101 14 6 4.3049 0.9960 0.9043 15 8 5.0708 0.9091 1.8442 16 6 4.7897 0.7460 -0.4699 17 6 5.9563 1.3633 -0.9247 18 6 6.4041 1.1271 -2.2078 19 6 5.7033 0.2756 -3.0431 20 6 6.2025 0.0172 -4.4414 21 8 7.4066 0.7545 -4.6611 22 6 4.5415 -0.3365 -2.6011 23 9 3.8592 -1.1625 -3.4241 24 6 4.0829 -0.1076 -1.3176 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3604 2.1306 0.1106 29 1 2.6047 1.4121 -0.9402 30 1 1.5151 1.4049 2.5796 31 1 3.1662 1.1683 3.2011 32 1 1.6055 3.4237 5.6584 33 1 6.5076 2.0247 -0.2726 34 1 7.3064 1.6050 -2.5599 35 1 6.4005 -1.0475 -4.5655 36 1 5.4469 0.3326 -5.1610 37 1 7.7854 0.6352 -5.5429 38 1 3.1795 -0.5879 -0.9718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293938950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:25 Heat of formation + Delta-G solvation = -96.145600 kcal Electronic energy + Delta-G solvation = -23221.493572 eV Core-core repulsion = 19557.563547 eV Total energy + Delta-G solvation = -3663.930025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.01462 -41.46512 -39.60076 -37.52823 -37.41347 -35.18256 -33.77949 -32.99881 -31.73975 -29.74958 -27.74148 -26.91768 -25.07447 -23.96510 -22.92634 -21.48144 -20.43724 -18.89954 -18.63802 -18.42305 -17.72622 -17.21605 -17.03866 -16.91564 -16.64802 -16.17033 -15.99919 -15.77406 -15.59583 -14.95405 -14.56339 -14.52022 -14.18599 -14.09840 -13.64551 -13.41566 -13.25876 -12.99686 -12.90241 -12.60614 -12.52645 -12.33283 -12.25747 -12.16702 -11.68189 -11.29106 -10.87861 -10.66468 -10.42979 -9.96547 -9.77220 -9.55543 -8.24520 -6.39515 -0.29593 0.05769 1.25379 1.36472 1.38728 1.50424 1.64187 2.19576 2.39624 2.49256 2.96954 3.05830 3.19630 3.43041 3.75605 3.83436 4.01715 4.04992 4.10667 4.19505 4.29823 4.45406 4.49601 4.61392 4.78239 4.85979 4.93799 4.96633 5.00524 5.16333 5.19387 5.27482 5.44805 5.63950 5.69033 5.71836 5.87554 6.02233 6.56370 6.69376 6.92324 7.16203 7.33961 8.83407 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.004377 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.904169 B = 6395.854388 C = 7314.895587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.196 4.196 3 C 0.127 3.873 4 N -0.586 5.586 5 C 0.263 3.737 6 C -0.546 4.546 7 H 0.054 0.946 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.969 3.031 11 H -0.267 1.267 12 H -0.268 1.268 13 H -0.281 1.281 14 C 0.543 3.457 15 O -0.586 6.586 16 C -0.105 4.105 17 C -0.090 4.090 18 C -0.067 4.067 19 C -0.108 4.108 20 C 0.123 3.877 21 O -0.582 6.582 22 C 0.099 3.901 23 F -0.129 7.129 24 C -0.131 4.131 25 H 0.121 0.879 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.027 0.973 31 H 0.001 0.999 32 H 0.268 0.732 33 H 0.129 0.871 34 H 0.163 0.837 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.407 0.593 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.666 -6.539 -22.650 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.215 4.215 3 C 0.005 3.995 4 N -0.315 5.315 5 C 0.142 3.858 6 C -0.585 4.585 7 H 0.072 0.928 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.793 3.207 11 H -0.191 1.191 12 H -0.193 1.193 13 H -0.207 1.207 14 C 0.331 3.669 15 O -0.467 6.467 16 C -0.108 4.108 17 C -0.109 4.109 18 C -0.085 4.085 19 C -0.110 4.110 20 C 0.046 3.954 21 O -0.391 6.391 22 C 0.080 3.920 23 F -0.108 7.108 24 C -0.150 4.150 25 H 0.139 0.861 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.045 0.955 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.180 0.820 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.258 0.742 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.819 -6.409 -21.405 22.668 hybrid contribution -0.100 0.459 0.352 0.587 sum 3.719 -5.951 -21.053 22.191 Atomic orbital electron populations 1.24099 0.95189 1.03288 0.96697 1.23285 0.97011 0.97790 1.03377 1.20984 0.92220 0.96766 0.89513 1.48142 1.07853 1.64375 1.11113 1.18792 0.94040 0.94552 0.78398 1.21712 1.43392 0.93348 1.00041 0.92750 1.25842 0.94356 1.03552 0.95105 1.70056 1.43761 1.37581 1.05165 0.85354 0.78241 0.78925 0.78211 1.19088 1.19332 1.20654 1.18828 0.82264 0.76914 0.88857 1.90728 1.56308 1.54290 1.45385 1.19689 0.97522 1.00797 0.92821 1.21368 0.93946 0.98736 0.96806 1.20927 1.00193 0.96336 0.91048 1.20228 0.94032 0.98177 0.98522 1.20790 0.87593 0.96384 0.90674 1.86374 1.40631 1.71543 1.40596 1.17057 0.92362 0.94141 0.88465 1.91509 1.78841 1.69449 1.70994 1.21612 1.01478 0.99601 0.92287 0.86080 0.87861 0.86797 0.90095 0.88109 0.95466 0.98089 0.92305 0.85265 0.81970 0.90138 0.89967 0.74151 0.82656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 14.32 67.78 0.97 -2.83 16 2 C -0.20 -5.58 8.56 25.64 0.22 -5.36 16 3 C 0.13 4.31 5.34 85.63 0.46 4.76 16 4 N -0.59 -26.26 2.45 -833.91 -2.04 -28.30 16 5 C 0.26 14.51 5.21 85.64 0.45 14.96 16 6 C -0.55 -31.85 9.39 25.60 0.24 -31.61 16 7 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.62 5.46 84.66 0.46 1.09 16 9 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 10 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 C 0.54 24.58 7.23 86.79 0.63 25.20 16 15 O -0.59 -32.13 16.58 -3.89 -0.06 -32.19 16 16 C -0.11 -3.61 4.96 -20.09 -0.10 -3.71 16 17 C -0.09 -2.73 9.72 22.53 0.22 -2.51 16 18 C -0.07 -1.60 9.36 22.22 0.21 -1.39 16 19 C -0.11 -2.30 5.89 -19.76 -0.12 -2.42 16 20 C 0.12 1.68 7.00 71.24 0.50 2.17 16 21 O -0.58 -7.39 12.12 -148.98 -1.81 -9.20 16 22 C 0.10 2.32 7.24 22.34 0.16 2.48 16 23 F -0.13 -2.74 16.79 44.97 0.75 -1.99 16 24 C -0.13 -3.65 7.46 22.58 0.17 -3.48 16 25 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 26 H 0.10 2.48 7.85 -2.91 -0.02 2.46 16 27 H 0.11 3.07 6.51 -2.91 -0.02 3.05 16 28 H 0.08 2.81 7.78 -2.39 -0.02 2.80 16 29 H 0.10 2.99 5.26 -2.38 -0.01 2.98 16 30 H 0.03 1.52 8.07 -2.38 -0.02 1.50 16 31 H 0.00 0.06 7.35 -2.39 -0.02 0.05 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 34 H 0.16 3.33 6.99 -2.91 -0.02 3.31 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.41 1.02 9.12 -74.06 -0.68 0.34 16 38 H 0.16 4.13 4.14 -2.91 -0.01 4.12 16 Total: -1.00 -75.57 330.82 4.05 -71.53 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.42 Total: 11.68 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 4.46 Total: -2.66 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -1.75 Total: -84.20 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.87 Total: -41.39 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.75 Total: -1.99 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.57 4.05 -71.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293938950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.618 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds