Wall clock time and date at job start Tue Mar 31 2020 07:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47326 * 2 1 4 4 S 1.81397 * 109.47256 * 120.00151 * 2 1 3 5 5 C 1.76203 * 102.99940 * 163.74859 * 4 2 1 6 6 C 1.39298 * 119.93769 * 351.98458 * 5 4 2 7 7 C 1.37087 * 120.06552 * 179.76038 * 6 5 4 8 8 C 1.39837 * 119.93314 * 0.53742 * 7 6 5 9 9 C 1.47477 * 120.06441 * 179.69907 * 8 7 6 10 10 O 1.21600 * 120.00720 * 148.83314 * 9 8 7 11 11 N 1.34780 * 119.99665 * 328.83189 * 9 8 7 12 12 C 1.46500 * 120.00385 * 3.74321 * 11 9 8 13 13 C 1.46504 * 119.99899 * 183.74281 * 11 9 8 14 14 C 1.50695 * 109.47083 * 90.00006 * 13 11 9 15 15 H 1.07998 * 120.00341 * 0.02562 * 14 13 11 16 16 C 1.37879 * 120.00307 * 180.02562 * 14 13 11 17 17 N 1.31523 * 119.99467 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00498 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47151 * 59.99630 * 18 16 14 20 20 H 1.48492 * 109.46986 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46778 * 299.99785 * 18 16 14 22 22 C 1.39840 * 119.87318 * 359.71602 * 8 7 6 23 23 C 1.37081 * 119.93582 * 0.02562 * 22 8 7 24 24 H 1.08999 * 109.47485 * 59.99611 * 1 2 3 25 25 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47233 * 299.99742 * 1 2 3 27 27 H 1.08997 * 109.46777 * 240.00291 * 2 1 3 28 28 H 1.08996 * 109.46486 * 53.12642 * 3 2 1 29 29 H 1.08998 * 109.47079 * 173.12627 * 3 2 1 30 30 H 1.09003 * 109.46715 * 293.12740 * 3 2 1 31 31 H 1.08003 * 119.96410 * 359.97438 * 6 5 4 32 32 H 1.07998 * 120.03197 * 180.25919 * 7 6 5 33 33 H 1.08999 * 109.47375 * 94.13315 * 12 11 9 34 34 H 1.09002 * 109.47477 * 214.13627 * 12 11 9 35 35 H 1.09008 * 109.46819 * 334.13492 * 12 11 9 36 36 H 1.09003 * 109.47075 * 209.99824 * 13 11 9 37 37 H 1.09003 * 109.46934 * 330.00061 * 13 11 9 38 38 H 0.97001 * 119.99635 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.02960 * 179.97438 * 22 8 7 40 40 H 1.07992 * 119.97040 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 3.8208 -1.1833 1.0886 6 6 4.2967 -0.9337 -0.1965 7 6 5.6092 -1.1835 -0.5034 8 6 6.4678 -1.6999 0.4721 9 6 7.8787 -1.9759 0.1432 10 8 8.7348 -1.8702 1.0003 11 7 8.2193 -2.3454 -1.1074 12 6 7.2014 -2.3935 -2.1599 13 6 9.6075 -2.6990 -1.4143 14 6 9.8104 -4.1758 -1.1934 15 1 8.9875 -4.7897 -0.8583 16 6 11.0465 -4.7433 -1.4190 17 7 12.0485 -3.9957 -1.8275 18 14 11.2978 -6.5740 -1.1459 19 1 10.3852 -7.3370 -2.0348 20 1 12.7049 -6.9323 -1.4568 21 1 11.0029 -6.9082 0.2707 22 6 5.9859 -1.9545 1.7599 23 6 4.6738 -1.6978 2.0625 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.5797 1.9905 0.8221 29 1 3.1230 1.4449 0.1230 30 1 1.7806 1.9196 -0.9451 31 1 3.6318 -0.5397 -0.9509 32 1 5.9787 -0.9858 -1.4988 33 1 7.1973 -1.4496 -2.7048 34 1 7.4275 -3.2088 -2.8471 35 1 6.2219 -2.5580 -1.7107 36 1 9.8234 -2.4541 -2.4543 37 1 10.2778 -2.1386 -0.7624 38 1 12.9181 -4.3949 -1.9866 39 1 6.6467 -2.3538 2.5151 40 1 4.3010 -1.8946 3.0567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298805223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:34 Heat of formation + Delta-G solvation = 0.350294 kcal Electronic energy + Delta-G solvation = -20688.980576 eV Core-core repulsion = 17595.448103 eV Total energy + Delta-G solvation = -3093.532473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95841 -37.86127 -35.27970 -35.00079 -32.79427 -31.18091 -31.11654 -27.76664 -27.62291 -26.21484 -24.06489 -23.17371 -22.11474 -21.69446 -19.22113 -17.55002 -16.90486 -16.53560 -16.24652 -15.74086 -15.08985 -14.78110 -14.51498 -14.25504 -14.17310 -13.86408 -13.49450 -13.40585 -12.91492 -12.68922 -12.56216 -12.38591 -12.13053 -11.92906 -11.75169 -11.67705 -11.27721 -11.19077 -11.01916 -10.87957 -10.58046 -10.23309 -10.17611 -9.74823 -9.59467 -9.06123 -8.97816 -8.44423 -7.71931 -7.51176 -6.05640 -4.10826 0.87307 1.27712 1.36304 2.16906 3.23006 3.31798 3.36030 3.39508 3.80375 4.09484 4.31510 4.41205 4.43871 4.67892 4.77365 4.88844 5.02710 5.14935 5.26637 5.28603 5.28754 5.33934 5.41439 5.45741 5.55883 5.65995 5.69070 5.78303 5.80194 5.95717 6.13492 6.18917 6.22904 6.45028 6.78101 7.04349 7.41735 7.49267 7.90466 8.20897 8.34593 8.86464 9.02928 9.54262 11.02445 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.003143 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.138101 B = 8905.729973 C = 9043.789677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 C -0.149 4.149 4 S -0.120 6.120 5 C -0.070 4.070 6 C -0.144 4.144 7 C -0.085 4.085 8 C -0.120 4.120 9 C 0.545 3.455 10 O -0.537 6.537 11 N -0.593 5.593 12 C 0.066 3.934 13 C 0.245 3.755 14 C -0.529 4.529 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.048 4.048 23 C -0.109 4.109 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.047 0.953 38 H 0.264 0.736 39 H 0.138 0.862 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.172 8.953 1.087 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.212 4.212 3 C -0.208 4.208 4 S 0.123 5.877 5 C -0.183 4.183 6 C -0.168 4.168 7 C -0.105 4.105 8 C -0.125 4.125 9 C 0.332 3.668 10 O -0.415 6.415 11 N -0.324 5.324 12 C -0.078 4.078 13 C 0.126 3.874 14 C -0.568 4.568 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.069 4.069 23 C -0.132 4.132 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.144 0.856 32 H 0.165 0.835 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.156 0.844 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.233 8.765 2.430 24.950 hybrid contribution 0.963 -0.837 -1.129 1.703 sum -22.271 7.928 1.302 23.676 Atomic orbital electron populations 1.21636 0.91434 1.03191 1.02955 1.23424 0.99971 0.99347 0.98483 1.22121 1.02063 0.93804 1.02761 1.85439 1.04504 1.71633 1.26078 1.21894 0.96932 1.02721 0.96793 1.20961 0.96636 1.04079 0.95097 1.21769 0.92785 0.96183 0.99737 1.20325 0.94905 1.02475 0.94814 1.18090 0.87279 0.78431 0.83036 1.90764 1.50811 1.52824 1.47129 1.48064 1.11900 1.64564 1.07838 1.22273 0.92424 1.01207 0.91872 1.19340 0.75215 0.96038 0.96842 1.21396 0.96300 0.93326 1.45795 0.92445 1.24939 0.95656 0.98471 0.94987 1.69928 1.01791 1.35723 1.45893 0.86539 0.77091 0.84855 0.78844 1.20221 1.21129 1.20117 1.21069 0.94624 0.95670 0.95496 1.20567 0.92846 1.01166 0.98626 0.90824 0.91435 0.91655 0.88571 0.91386 0.91703 0.91608 0.85555 0.83490 0.93249 0.90875 0.90704 0.94798 0.93535 0.92606 0.84426 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 9.20 37.16 0.34 -0.42 16 2 C -0.08 -0.62 2.58 -26.73 -0.07 -0.69 16 3 C -0.15 -1.03 8.90 37.16 0.33 -0.70 16 4 S -0.12 -1.22 21.27 -107.50 -2.29 -3.50 16 5 C -0.07 -0.86 6.08 -38.79 -0.24 -1.10 16 6 C -0.14 -1.69 8.40 -39.60 -0.33 -2.02 16 7 C -0.08 -1.15 7.40 -39.40 -0.29 -1.44 16 8 C -0.12 -2.04 5.48 -104.94 -0.58 -2.62 16 9 C 0.54 11.94 7.43 -12.49 -0.09 11.85 16 10 O -0.54 -14.02 16.29 5.28 0.09 -13.93 16 11 N -0.59 -12.90 2.86 -184.21 -0.53 -13.42 16 12 C 0.07 1.06 8.79 59.85 0.53 1.58 16 13 C 0.24 6.48 5.21 -5.19 -0.03 6.45 16 14 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.05 -0.75 9.56 -39.40 -0.38 -1.13 16 23 C -0.11 -1.43 9.75 -39.60 -0.39 -1.81 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.10 0.69 6.32 -51.93 -0.33 0.36 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.54 7.13 -51.93 -0.37 0.17 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.13 1.16 5.25 -52.48 -0.28 0.88 16 32 H 0.15 1.77 4.72 -52.49 -0.25 1.52 16 33 H 0.05 0.66 7.39 -51.93 -0.38 0.28 16 34 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.07 1.04 4.76 -51.92 -0.25 0.80 16 36 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.05 1.38 7.37 -51.93 -0.38 1.00 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.14 2.18 7.94 -52.49 -0.42 1.76 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -33.30 340.14 -9.07 -42.37 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.57 Total: -1.77 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.61 Total: -5.86 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.21 Total: -39.38 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.29 Total: -3.50 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.30 -9.07 -42.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298805223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.724 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds