Wall clock time and date at job start Tue Mar 31 2020 07:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47326 * 2 1 4 4 S 1.81397 * 109.47256 * 120.00151 * 2 1 3 5 5 C 1.76203 * 102.99940 * 163.74859 * 4 2 1 6 6 C 1.39298 * 119.93769 * 351.98458 * 5 4 2 7 7 C 1.37087 * 120.06552 * 179.76038 * 6 5 4 8 8 C 1.39837 * 119.93314 * 0.53742 * 7 6 5 9 9 C 1.47477 * 120.06441 * 179.69907 * 8 7 6 10 10 O 1.21600 * 120.00720 * 148.83314 * 9 8 7 11 11 N 1.34780 * 119.99665 * 328.83189 * 9 8 7 12 12 C 1.46500 * 120.00385 * 3.74321 * 11 9 8 13 13 C 1.46504 * 119.99899 * 183.74281 * 11 9 8 14 14 C 1.50695 * 109.47083 * 90.00006 * 13 11 9 15 15 H 1.07998 * 120.00341 * 0.02562 * 14 13 11 16 16 C 1.37879 * 120.00307 * 180.02562 * 14 13 11 17 17 N 1.31523 * 119.99467 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00498 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47151 * 59.99630 * 18 16 14 20 20 H 1.48492 * 109.46986 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46778 * 299.99785 * 18 16 14 22 22 C 1.39840 * 119.87318 * 359.71602 * 8 7 6 23 23 C 1.37081 * 119.93582 * 0.02562 * 22 8 7 24 24 H 1.08999 * 109.47485 * 59.99611 * 1 2 3 25 25 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47233 * 299.99742 * 1 2 3 27 27 H 1.08997 * 109.46777 * 240.00291 * 2 1 3 28 28 H 1.08996 * 109.46486 * 53.12642 * 3 2 1 29 29 H 1.08998 * 109.47079 * 173.12627 * 3 2 1 30 30 H 1.09003 * 109.46715 * 293.12740 * 3 2 1 31 31 H 1.08003 * 119.96410 * 359.97438 * 6 5 4 32 32 H 1.07998 * 120.03197 * 180.25919 * 7 6 5 33 33 H 1.08999 * 109.47375 * 94.13315 * 12 11 9 34 34 H 1.09002 * 109.47477 * 214.13627 * 12 11 9 35 35 H 1.09008 * 109.46819 * 334.13492 * 12 11 9 36 36 H 1.09003 * 109.47075 * 209.99824 * 13 11 9 37 37 H 1.09003 * 109.46934 * 330.00061 * 13 11 9 38 38 H 0.97001 * 119.99635 * 180.02562 * 17 16 14 39 39 H 1.07998 * 120.02960 * 179.97438 * 22 8 7 40 40 H 1.07992 * 119.97040 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 3.8208 -1.1833 1.0886 6 6 4.2967 -0.9337 -0.1965 7 6 5.6092 -1.1835 -0.5034 8 6 6.4678 -1.6999 0.4721 9 6 7.8787 -1.9759 0.1432 10 8 8.7348 -1.8702 1.0003 11 7 8.2193 -2.3454 -1.1074 12 6 7.2014 -2.3935 -2.1599 13 6 9.6075 -2.6990 -1.4143 14 6 9.8104 -4.1758 -1.1934 15 1 8.9875 -4.7897 -0.8583 16 6 11.0465 -4.7433 -1.4190 17 7 12.0485 -3.9957 -1.8275 18 14 11.2978 -6.5740 -1.1459 19 1 10.3852 -7.3370 -2.0348 20 1 12.7049 -6.9323 -1.4568 21 1 11.0029 -6.9082 0.2707 22 6 5.9859 -1.9545 1.7599 23 6 4.6738 -1.6978 2.0625 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.5797 1.9905 0.8221 29 1 3.1230 1.4449 0.1230 30 1 1.7806 1.9196 -0.9451 31 1 3.6318 -0.5397 -0.9509 32 1 5.9787 -0.9858 -1.4988 33 1 7.1973 -1.4496 -2.7048 34 1 7.4275 -3.2088 -2.8471 35 1 6.2219 -2.5580 -1.7107 36 1 9.8234 -2.4541 -2.4543 37 1 10.2778 -2.1386 -0.7624 38 1 12.9181 -4.3949 -1.9866 39 1 6.6467 -2.3538 2.5151 40 1 4.3010 -1.8946 3.0567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298805223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:33 Heat of formation + Delta-G solvation = -19.109635 kcal Electronic energy + Delta-G solvation = -20689.824422 eV Core-core repulsion = 17595.448103 eV Total energy + Delta-G solvation = -3094.376319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36999 -39.26056 -36.79094 -35.81246 -34.86639 -32.53304 -32.19834 -29.61713 -28.14873 -27.72951 -25.78455 -24.17255 -23.65143 -22.41039 -20.73930 -18.74119 -18.51121 -18.27719 -17.39718 -16.98872 -16.56030 -16.19763 -15.92682 -15.52405 -15.19432 -14.87077 -14.62544 -14.43520 -14.24459 -13.97019 -13.78130 -13.67339 -13.44704 -13.11843 -13.03298 -12.84272 -12.56933 -12.32081 -12.25422 -12.23843 -12.10894 -12.03086 -11.77428 -10.97331 -10.88876 -10.67059 -10.59487 -10.08287 -9.51520 -8.41601 -8.24863 -6.40742 -0.28656 0.31041 0.48121 1.35335 1.39545 1.39817 1.47288 1.78703 2.23477 2.40532 2.72195 3.04191 3.59057 3.71769 3.79051 3.87659 3.90635 4.18091 4.25739 4.35215 4.43517 4.54182 4.58436 4.74240 4.80184 4.85659 4.88065 4.91403 4.92223 4.99474 5.09578 5.12915 5.20278 5.26008 5.29936 5.35929 5.50374 5.69579 5.79061 6.01766 6.62781 6.69097 7.21532 7.36777 8.81880 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.003143 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.138101 B = 8905.729973 C = 9043.789677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C -0.149 4.149 4 S -0.124 6.124 5 C -0.065 4.065 6 C -0.135 4.135 7 C -0.075 4.075 8 C -0.148 4.148 9 C 0.537 3.463 10 O -0.598 6.598 11 N -0.600 5.600 12 C 0.060 3.940 13 C 0.258 3.742 14 C -0.549 4.549 15 H 0.052 0.948 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.969 3.031 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.278 1.278 22 C -0.060 4.060 23 C -0.111 4.111 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.030 0.970 37 H 0.000 1.000 38 H 0.269 0.731 39 H 0.121 0.879 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.684 8.973 -0.198 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.208 4.208 3 C -0.207 4.207 4 S 0.121 5.879 5 C -0.178 4.178 6 C -0.158 4.158 7 C -0.095 4.095 8 C -0.154 4.154 9 C 0.327 3.673 10 O -0.481 6.481 11 N -0.329 5.329 12 C -0.081 4.081 13 C 0.137 3.863 14 C -0.587 4.587 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.566 5.566 18 Si 0.793 3.207 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.204 1.204 22 C -0.080 4.080 23 C -0.134 4.134 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.178 0.822 32 H 0.183 0.817 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.048 0.952 37 H 0.018 0.982 38 H 0.078 0.922 39 H 0.139 0.861 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.809 8.793 1.116 28.236 hybrid contribution 1.876 -0.727 -0.719 2.137 sum -24.933 8.066 0.397 26.208 Atomic orbital electron populations 1.21663 0.90004 1.03503 1.03930 1.23617 1.00998 0.99220 0.96976 1.22121 1.01092 0.93579 1.03936 1.85581 1.02356 1.71648 1.28334 1.22209 0.98256 1.00673 0.96702 1.21281 0.96076 1.02859 0.95596 1.21887 0.92999 0.95025 0.99568 1.19955 0.92446 1.06419 0.96577 1.18890 0.89062 0.77103 0.82208 1.90708 1.53034 1.55534 1.48785 1.48058 1.11216 1.64204 1.09441 1.22619 0.91893 1.02963 0.90626 1.18827 0.77606 0.94619 0.95228 1.21661 0.96607 0.94308 1.46124 0.92986 1.25871 0.95215 1.03543 0.94392 1.70045 1.02292 1.37847 1.46447 0.85451 0.77721 0.78889 0.78669 1.18353 1.20071 1.20384 1.21017 0.95712 0.96495 0.94820 1.20695 0.91839 1.01055 0.99835 0.88774 0.91488 0.91727 0.87566 0.91377 0.93066 0.89592 0.82173 0.81704 0.89817 0.91327 0.88066 0.95163 0.98191 0.92245 0.86129 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 9.20 71.98 0.66 -0.34 16 2 C -0.08 -0.86 2.58 30.59 0.08 -0.78 16 3 C -0.15 -1.50 8.90 71.98 0.64 -0.86 16 4 S -0.12 -2.14 21.27 -56.49 -1.20 -3.34 16 5 C -0.07 -1.43 6.08 22.78 0.14 -1.29 16 6 C -0.13 -2.70 8.40 22.25 0.19 -2.51 16 7 C -0.08 -1.88 7.40 22.39 0.17 -1.71 16 8 C -0.15 -5.12 5.48 -20.07 -0.11 -5.23 16 9 C 0.54 24.73 7.43 86.68 0.64 25.37 16 10 O -0.60 -33.64 16.29 -4.03 -0.07 -33.70 16 11 N -0.60 -26.89 2.86 -854.96 -2.44 -29.33 16 12 C 0.06 1.86 8.79 127.77 1.12 2.98 16 13 C 0.26 14.38 5.21 85.63 0.45 14.83 16 14 C -0.55 -32.48 9.39 25.60 0.24 -32.24 16 15 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 16 C 0.01 0.53 5.46 84.65 0.46 0.99 16 17 N -0.93 -56.76 13.29 21.45 0.28 -56.48 16 18 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 C -0.06 -1.91 9.56 22.39 0.21 -1.70 16 23 C -0.11 -2.81 9.75 22.26 0.22 -2.59 16 24 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.11 0.98 6.32 -2.39 -0.02 0.96 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.68 7.13 -2.39 -0.02 0.66 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.16 2.13 5.25 -2.91 -0.02 2.11 16 32 H 0.17 3.45 4.72 -2.91 -0.01 3.44 16 33 H 0.08 2.02 7.39 -2.39 -0.02 2.00 16 34 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 35 H 0.10 2.60 4.76 -2.38 -0.01 2.59 16 36 H 0.03 1.67 8.07 -2.39 -0.02 1.66 16 37 H 0.00 0.00 7.37 -2.39 -0.02 -0.02 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.12 4.15 7.94 -2.91 -0.02 4.12 16 40 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -76.87 340.14 4.75 -72.12 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.04 Total: 8.24 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 5.11 Total: -5.06 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -2.16 Total: -85.81 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.07 Total: -33.70 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -1.20 Total: -3.34 kcal Total: -76.87 4.75 -72.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298805223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.014 kcal (2) G-P(sol) polarization free energy of solvation -76.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds