Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 N 1.46501 * 109.47407 * 180.02562 * 3 2 1 5 5 C 1.36869 * 119.99977 * 96.67680 * 4 3 2 6 6 H 1.07998 * 120.00200 * 160.43455 * 5 4 3 7 7 C 1.39050 * 120.00044 * 340.43908 * 5 4 3 8 8 N 1.31363 * 120.00265 * 357.53825 * 7 5 4 9 9 Si 1.86800 * 119.99947 * 177.54360 * 7 5 4 10 10 H 1.48500 * 109.47357 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47373 * 120.00069 * 9 7 5 12 12 H 1.48503 * 109.47109 * 239.99585 * 9 7 5 13 13 C 1.34768 * 120.00167 * 276.68096 * 4 3 2 14 14 O 1.21591 * 120.00228 * 184.37254 * 13 4 3 15 15 C 1.47750 * 119.99908 * 4.37673 * 13 4 3 16 16 C 1.39545 * 120.11050 * 304.94169 * 15 13 4 17 17 C 1.38678 * 119.76325 * 180.02562 * 16 15 13 18 18 S 1.76197 * 120.00998 * 179.97438 * 17 16 15 19 19 C 1.81395 * 103.00364 * 180.02562 * 18 17 16 20 20 C 1.39109 * 119.98537 * 359.97438 * 17 16 15 21 21 C 1.38196 * 120.22636 * 0.26452 * 20 17 16 22 22 C 1.38026 * 120.23737 * 359.48041 * 21 20 17 23 23 C 1.50697 * 119.98991 * 180.23594 * 22 21 20 24 24 H 1.09004 * 109.47137 * 299.99747 * 1 2 3 25 25 H 1.08994 * 109.47664 * 60.00576 * 1 2 3 26 26 H 1.09011 * 109.46736 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47627 * 240.00210 * 2 1 3 28 28 H 1.08994 * 109.47664 * 119.99424 * 2 1 3 29 29 H 1.09000 * 109.47514 * 59.99408 * 3 2 1 30 30 H 1.09005 * 109.46974 * 300.00034 * 3 2 1 31 31 H 0.96997 * 120.00147 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.11852 * 0.04400 * 16 15 13 33 33 H 1.09001 * 109.46907 * 299.99908 * 19 18 17 34 34 H 1.09000 * 109.47480 * 59.99318 * 19 18 17 35 35 H 1.08994 * 109.47171 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.88493 * 179.97438 * 20 17 16 37 37 H 1.07994 * 119.87874 * 179.72006 * 21 20 17 38 38 H 1.09003 * 109.47556 * 273.89367 * 23 22 21 39 39 H 1.09006 * 109.47666 * 33.89795 * 23 22 21 40 40 H 1.09004 * 109.46740 * 153.89105 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1888 1.5807 -1.1782 6 1 5.2219 1.8951 -1.1690 7 6 3.5532 1.3164 -2.3863 8 7 2.3115 0.8877 -2.3954 9 14 4.4652 1.5707 -3.9967 10 1 5.8402 2.0561 -3.7156 11 1 4.5352 0.2839 -4.7346 12 1 3.7449 2.5749 -4.8202 13 6 4.1793 1.3068 1.1583 14 8 5.3926 1.3865 1.1686 15 6 3.4444 1.0609 2.4162 16 6 2.4327 1.9340 2.8180 17 6 1.7478 1.6966 4.0003 18 16 0.4697 2.7952 4.5142 19 6 -0.0932 2.0642 6.0760 20 6 2.0702 0.5909 4.7805 21 6 3.0755 -0.2707 4.3846 22 6 3.7596 -0.0462 3.2069 23 6 4.8513 -0.9923 2.7778 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6765 1.9564 -0.8900 31 1 1.8681 0.7037 -3.2382 32 1 2.1837 2.7914 2.2103 33 1 -0.4580 1.0534 5.8934 34 1 0.7374 2.0289 6.7809 35 1 -0.8977 2.6708 6.4919 36 1 1.5361 0.4078 5.7012 37 1 3.3242 -1.1248 4.9968 38 1 5.7927 -0.6942 3.2394 39 1 4.5980 -2.0053 3.0906 40 1 4.9528 -0.9617 1.6930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299144493.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -0.391109 kcal Electronic energy + Delta-G solvation = -22093.407936 eV Core-core repulsion = 18999.843313 eV Total energy + Delta-G solvation = -3093.564622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.66819 -37.60406 -35.34097 -32.46151 -32.38489 -31.45599 -30.70954 -28.99210 -26.84892 -25.79625 -24.63629 -22.77907 -21.49468 -20.57854 -19.46578 -17.30947 -16.74708 -16.09734 -15.62057 -15.15342 -14.71632 -14.21705 -14.06861 -13.86048 -13.59182 -13.45756 -13.24900 -13.07946 -12.92448 -12.42437 -12.36158 -11.94476 -11.85832 -11.56886 -11.35121 -11.14933 -11.06308 -10.93895 -10.68412 -10.37567 -10.33473 -10.13099 -10.10328 -9.68968 -9.20092 -8.84983 -8.61592 -8.33379 -7.64344 -7.18410 -6.27343 -3.89485 1.41613 1.58330 1.60754 2.48789 3.12864 3.23859 3.30544 3.67039 4.03034 4.21392 4.80821 4.95052 4.95684 5.02584 5.14406 5.15871 5.36500 5.51093 5.61732 5.65561 5.94077 6.01785 6.06609 6.09856 6.15138 6.23564 6.38617 6.41230 6.52161 6.57843 6.60074 6.78978 6.92322 6.98689 7.01702 7.16952 7.38073 7.55072 7.76467 8.09858 8.50400 9.13473 9.38569 9.94590 10.64387 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.005397 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.769912 B = 5187.066029 C = 5809.861190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.115 3.885 4 N -0.429 5.429 5 C -0.295 4.295 6 H 0.102 0.898 7 C 0.027 3.973 8 N -0.870 5.870 9 Si 0.930 3.070 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.478 3.522 14 O -0.585 6.585 15 C -0.064 4.064 16 C -0.073 4.073 17 C -0.095 4.095 18 S -0.126 6.126 19 C -0.143 4.143 20 C -0.131 4.131 21 C -0.109 4.109 22 C -0.052 4.052 23 C -0.110 4.110 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.026 0.974 29 H 0.038 0.962 30 H 0.113 0.887 31 H 0.266 0.734 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -1.588 11.752 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.008 4.008 4 N -0.145 5.145 5 C -0.423 4.423 6 H 0.120 0.880 7 C -0.176 4.176 8 N -0.511 5.511 9 Si 0.757 3.243 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.266 3.734 14 O -0.470 6.470 15 C -0.069 4.069 16 C -0.097 4.097 17 C -0.207 4.207 18 S 0.115 5.885 19 C -0.311 4.311 20 C -0.155 4.155 21 C -0.129 4.129 22 C -0.055 4.055 23 C -0.167 4.167 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.150 0.850 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.701 -0.545 11.101 12.979 hybrid contribution 0.555 -1.125 -0.132 1.261 sum -6.146 -1.670 10.969 12.684 Atomic orbital electron populations 1.21573 0.97412 0.99756 1.00576 1.21846 0.93972 0.98221 1.01490 1.21909 0.80114 0.97397 1.01355 1.43728 1.05804 1.59657 1.05287 1.19831 0.97948 1.42369 0.82169 0.87983 1.25371 0.96231 0.96267 0.99694 1.70033 1.10883 1.43527 1.26638 0.85792 0.79625 0.77926 0.80984 1.19277 1.20696 1.20709 1.17858 0.87106 0.84914 0.83511 1.90619 1.13329 1.56807 1.86286 1.20126 0.95547 0.94853 0.96403 1.20939 0.94640 0.99734 0.94358 1.21445 1.01072 0.99210 0.98998 1.85452 1.41115 1.35964 1.26006 1.23613 1.04723 1.04887 0.97902 1.21036 0.99631 0.95181 0.99651 1.20749 0.96339 0.99543 0.96262 1.19916 0.96882 0.95023 0.93702 1.20768 0.96291 0.96231 1.03380 0.94429 0.92693 0.94417 0.88637 0.95532 0.94397 0.86961 0.92289 0.85007 0.89915 0.89987 0.87768 0.86312 0.85858 0.90930 0.92310 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.12 -2.51 5.57 -26.73 -0.15 -2.66 16 3 C 0.12 2.62 4.29 -4.04 -0.02 2.60 16 4 N -0.43 -10.94 2.63 -115.92 -0.31 -11.24 16 5 C -0.30 -8.01 9.40 -15.00 -0.14 -8.15 16 6 H 0.10 2.92 7.30 -52.49 -0.38 2.54 16 7 C 0.03 0.67 5.29 -17.45 -0.09 0.58 16 8 N -0.87 -21.58 7.85 55.50 0.44 -21.14 16 9 Si 0.93 20.23 29.55 -169.99 -5.02 15.21 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.48 11.98 5.95 -12.38 -0.07 11.91 16 14 O -0.58 -16.36 15.70 5.29 0.08 -16.28 16 15 C -0.06 -1.34 4.24 -104.99 -0.45 -1.79 16 16 C -0.07 -1.38 7.57 -38.93 -0.29 -1.67 16 17 C -0.10 -1.53 6.11 -39.10 -0.24 -1.77 16 18 S -0.13 -1.70 22.56 -107.50 -2.43 -4.12 16 19 C -0.14 -1.29 9.15 101.05 0.92 -0.36 16 20 C -0.13 -1.89 9.36 -39.27 -0.37 -2.26 16 21 C -0.11 -1.65 9.69 -39.67 -0.38 -2.04 16 22 C -0.05 -0.96 5.92 -104.17 -0.62 -1.58 16 23 C -0.11 -1.93 9.24 36.00 0.33 -1.60 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.10 2.31 6.23 -51.93 -0.32 1.99 16 28 H 0.03 0.57 7.31 -51.93 -0.38 0.19 16 29 H 0.04 0.80 4.15 -51.93 -0.22 0.59 16 30 H 0.11 2.75 5.87 -51.93 -0.30 2.44 16 31 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 32 H 0.13 2.53 6.64 -52.49 -0.35 2.19 16 33 H 0.08 0.69 7.74 -51.92 -0.40 0.29 16 34 H 0.08 0.68 7.74 -51.92 -0.40 0.27 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.12 1.34 5.86 -52.49 -0.31 1.03 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 40 H 0.08 1.59 6.66 -51.93 -0.35 1.25 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -29.04 331.98 -8.93 -37.97 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.50 Total: 5.47 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.20 Total: -10.86 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.13 Total: -32.39 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.08 Total: -16.28 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.43 Total: -4.12 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.04 -8.93 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299144493.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.582 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds