Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46848 * 2 1 4 4 N 1.46501 * 109.47407 * 180.02562 * 3 2 1 5 5 C 1.36869 * 119.99977 * 96.67680 * 4 3 2 6 6 H 1.07998 * 120.00200 * 160.43455 * 5 4 3 7 7 C 1.39050 * 120.00044 * 340.43908 * 5 4 3 8 8 N 1.31363 * 120.00265 * 357.53825 * 7 5 4 9 9 Si 1.86800 * 119.99947 * 177.54360 * 7 5 4 10 10 H 1.48500 * 109.47357 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47373 * 120.00069 * 9 7 5 12 12 H 1.48503 * 109.47109 * 239.99585 * 9 7 5 13 13 C 1.34768 * 120.00167 * 276.68096 * 4 3 2 14 14 O 1.21591 * 120.00228 * 184.37254 * 13 4 3 15 15 C 1.47750 * 119.99908 * 4.37673 * 13 4 3 16 16 C 1.39545 * 120.11050 * 304.94169 * 15 13 4 17 17 C 1.38678 * 119.76325 * 180.02562 * 16 15 13 18 18 S 1.76197 * 120.00998 * 179.97438 * 17 16 15 19 19 C 1.81395 * 103.00364 * 180.02562 * 18 17 16 20 20 C 1.39109 * 119.98537 * 359.97438 * 17 16 15 21 21 C 1.38196 * 120.22636 * 0.26452 * 20 17 16 22 22 C 1.38026 * 120.23737 * 359.48041 * 21 20 17 23 23 C 1.50697 * 119.98991 * 180.23594 * 22 21 20 24 24 H 1.09004 * 109.47137 * 299.99747 * 1 2 3 25 25 H 1.08994 * 109.47664 * 60.00576 * 1 2 3 26 26 H 1.09011 * 109.46736 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47627 * 240.00210 * 2 1 3 28 28 H 1.08994 * 109.47664 * 119.99424 * 2 1 3 29 29 H 1.09000 * 109.47514 * 59.99408 * 3 2 1 30 30 H 1.09005 * 109.46974 * 300.00034 * 3 2 1 31 31 H 0.96997 * 120.00147 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.11852 * 0.04400 * 16 15 13 33 33 H 1.09001 * 109.46907 * 299.99908 * 19 18 17 34 34 H 1.09000 * 109.47480 * 59.99318 * 19 18 17 35 35 H 1.08994 * 109.47171 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.88493 * 179.97438 * 20 17 16 37 37 H 1.07994 * 119.87874 * 179.72006 * 21 20 17 38 38 H 1.09003 * 109.47556 * 273.89367 * 23 22 21 39 39 H 1.09006 * 109.47666 * 33.89795 * 23 22 21 40 40 H 1.09004 * 109.46740 * 153.89105 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1888 1.5807 -1.1782 6 1 5.2219 1.8951 -1.1690 7 6 3.5532 1.3164 -2.3863 8 7 2.3115 0.8877 -2.3954 9 14 4.4652 1.5707 -3.9967 10 1 5.8402 2.0561 -3.7156 11 1 4.5352 0.2839 -4.7346 12 1 3.7449 2.5749 -4.8202 13 6 4.1793 1.3068 1.1583 14 8 5.3926 1.3865 1.1686 15 6 3.4444 1.0609 2.4162 16 6 2.4327 1.9340 2.8180 17 6 1.7478 1.6966 4.0003 18 16 0.4697 2.7952 4.5142 19 6 -0.0932 2.0642 6.0760 20 6 2.0702 0.5909 4.7805 21 6 3.0755 -0.2707 4.3846 22 6 3.7596 -0.0462 3.2069 23 6 4.8513 -0.9923 2.7778 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6765 1.9564 -0.8900 31 1 1.8681 0.7037 -3.2382 32 1 2.1837 2.7914 2.2103 33 1 -0.4580 1.0534 5.8934 34 1 0.7374 2.0289 6.7809 35 1 -0.8977 2.6708 6.4919 36 1 1.5361 0.4078 5.7012 37 1 3.3242 -1.1248 4.9968 38 1 5.7927 -0.6942 3.2394 39 1 4.5980 -2.0053 3.0906 40 1 4.9528 -0.9617 1.6930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299144493.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -15.482315 kcal Electronic energy + Delta-G solvation = -22094.062340 eV Core-core repulsion = 18999.843313 eV Total energy + Delta-G solvation = -3094.219026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28706 -39.21408 -37.27674 -34.21511 -33.80176 -33.23329 -32.17923 -29.76991 -28.28135 -27.55955 -26.40331 -24.27943 -22.90713 -22.28040 -21.07133 -19.08277 -18.45194 -17.69972 -16.84907 -16.63419 -16.43655 -15.97652 -15.47610 -15.22645 -15.06257 -14.76597 -14.62248 -14.37403 -14.34691 -13.91034 -13.62980 -13.38557 -13.22498 -13.13337 -13.02915 -12.77177 -12.52947 -12.45558 -12.27695 -12.21604 -12.09682 -11.92076 -11.49208 -11.12042 -10.76122 -10.46149 -10.40507 -9.89810 -9.56131 -8.30671 -8.22277 -5.95477 0.07171 0.26074 0.58955 1.36030 1.41138 1.54043 1.55267 1.97458 2.25562 2.64692 3.01353 3.16569 3.74937 3.88705 3.94782 4.14027 4.33133 4.35299 4.38993 4.43636 4.54067 4.61643 4.66682 4.71282 4.75643 4.85680 4.92201 4.93911 5.10936 5.14931 5.17707 5.25906 5.27740 5.35429 5.42254 5.60384 5.65103 5.86856 5.92140 6.10526 6.53550 7.13722 7.43535 7.99720 8.66364 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019007 B = 0.005397 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.769912 B = 5187.066029 C = 5809.861190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.123 3.877 4 N -0.440 5.440 5 C -0.341 4.341 6 H 0.071 0.929 7 C 0.001 3.999 8 N -0.871 5.871 9 Si 0.991 3.009 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.267 1.267 13 C 0.470 3.530 14 O -0.631 6.631 15 C -0.094 4.094 16 C -0.089 4.089 17 C -0.094 4.094 18 S -0.153 6.153 19 C -0.133 4.133 20 C -0.116 4.116 21 C -0.095 4.095 22 C -0.071 4.071 23 C -0.104 4.104 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.273 0.727 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.127 0.873 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 -2.809 14.339 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.001 3.999 4 N -0.156 5.156 5 C -0.469 4.469 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.510 5.510 9 Si 0.815 3.185 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.192 1.192 13 C 0.260 3.740 14 O -0.520 6.520 15 C -0.099 4.099 16 C -0.113 4.113 17 C -0.206 4.206 18 S 0.088 5.912 19 C -0.301 4.301 20 C -0.140 4.140 21 C -0.114 4.114 22 C -0.075 4.075 23 C -0.161 4.161 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.145 0.855 36 H 0.181 0.819 37 H 0.184 0.816 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.310 -1.764 13.690 16.650 hybrid contribution 1.262 -0.725 -0.793 1.658 sum -8.048 -2.489 12.897 15.405 Atomic orbital electron populations 1.21472 0.94445 1.01207 1.01087 1.21652 0.96379 0.96635 0.99664 1.21875 0.78726 0.98348 1.00974 1.43916 1.06839 1.59680 1.05148 1.19701 0.97421 1.45789 0.84028 0.91091 1.26027 0.97056 0.95247 1.01756 1.70127 1.11128 1.42067 1.27641 0.84906 0.77985 0.78289 0.77295 1.20460 1.19751 1.19151 1.18589 0.86946 0.83603 0.84890 1.90546 1.15489 1.58677 1.87335 1.19840 0.97220 0.97390 0.95414 1.20763 0.95275 0.99232 0.96019 1.21646 1.01025 1.00077 0.97853 1.85643 1.39950 1.36198 1.29432 1.23796 1.05809 1.05678 0.94804 1.21565 0.98692 0.93421 1.00291 1.21162 0.95036 1.00506 0.94730 1.20138 0.97782 0.94546 0.95004 1.20706 0.96576 0.98404 1.00388 0.92979 0.93053 0.92459 0.91645 0.96005 0.92892 0.88965 0.91640 0.86762 0.88442 0.88482 0.85484 0.81938 0.81647 0.90971 0.88567 0.95019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 9.91 71.98 0.71 -3.63 16 2 C -0.10 -4.59 5.57 30.59 0.17 -4.42 16 3 C 0.12 5.85 4.29 86.38 0.37 6.22 16 4 N -0.44 -24.07 2.63 -638.92 -1.68 -25.75 16 5 C -0.34 -19.91 9.40 84.10 0.79 -19.12 16 6 H 0.07 4.46 7.30 -2.91 -0.02 4.44 16 7 C 0.00 0.07 5.29 84.96 0.45 0.52 16 8 N -0.87 -44.28 7.85 21.68 0.17 -44.11 16 9 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 13 C 0.47 25.32 5.95 86.76 0.52 25.84 16 14 O -0.63 -38.41 15.70 -4.00 -0.06 -38.47 16 15 C -0.09 -4.07 4.24 -20.11 -0.09 -4.15 16 16 C -0.09 -3.41 7.57 22.69 0.17 -3.24 16 17 C -0.09 -2.81 6.11 22.58 0.14 -2.67 16 18 S -0.15 -3.71 22.56 -56.49 -1.27 -4.99 16 19 C -0.13 -1.69 9.15 113.37 1.04 -0.65 16 20 C -0.12 -2.83 9.36 22.47 0.21 -2.62 16 21 C -0.10 -2.51 9.69 22.21 0.22 -2.30 16 22 C -0.07 -2.60 5.92 -19.57 -0.12 -2.71 16 23 C -0.10 -3.70 9.24 71.24 0.66 -3.04 16 24 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.07 3.26 6.23 -2.39 -0.01 3.24 16 28 H 0.02 0.95 7.31 -2.39 -0.02 0.93 16 29 H 0.05 2.34 4.15 -2.39 -0.01 2.33 16 30 H 0.09 4.72 5.87 -2.38 -0.01 4.70 16 31 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 32 H 0.11 4.64 6.64 -2.91 -0.02 4.62 16 33 H 0.10 1.04 7.74 -2.39 -0.02 1.02 16 34 H 0.10 1.02 7.74 -2.39 -0.02 1.00 16 35 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.16 2.55 5.86 -2.91 -0.02 2.54 16 37 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.10 2.58 8.11 -2.38 -0.02 2.56 16 40 H 0.03 1.38 6.66 -2.39 -0.02 1.37 16 Total: -1.00 -69.84 331.98 5.46 -64.38 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.04 Total: 20.11 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 5.24 Total: -15.97 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -1.51 Total: -69.86 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -0.06 Total: -38.47 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.27 Total: -4.99 kcal Total: -69.84 5.46 -64.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299144493.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.900 kcal (2) G-P(sol) polarization free energy of solvation -69.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds