Wall clock time and date at job start Tue Mar 31 2020 08:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 N 1.46499 * 109.47064 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00172 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99945 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00446 * 179.97438 * 7 6 5 10 10 S 1.81005 * 109.47227 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99593 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00337 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99395 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00267 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99902 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47085 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47381 * 119.99717 * 15 13 11 18 18 H 1.48501 * 109.47348 * 240.00373 * 15 13 11 19 19 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 20 20 C 1.38237 * 119.99936 * 299.72798 * 19 2 1 21 21 C 1.38239 * 120.00019 * 179.79019 * 20 19 2 22 22 C 1.38233 * 119.99539 * 0.43796 * 21 20 19 23 23 C 1.38231 * 120.00493 * 359.81540 * 22 21 20 24 24 C 1.38236 * 119.99974 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 27 27 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 29 29 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 30 30 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 31 31 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 32 32 H 0.97005 * 120.00389 * 359.97438 * 6 5 4 33 33 H 1.09006 * 109.47145 * 299.99721 * 9 7 6 34 34 H 1.09000 * 109.47401 * 59.99638 * 9 7 6 35 35 H 0.97000 * 120.00131 * 179.97438 * 14 13 11 36 36 H 1.07998 * 120.00490 * 359.97438 * 20 19 2 37 37 H 1.08000 * 120.00241 * 180.27418 * 21 20 19 38 38 H 1.08006 * 119.99896 * 179.83904 * 22 21 20 39 39 H 1.08002 * 120.00573 * 180.02562 * 23 22 21 40 40 H 1.08002 * 120.00273 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 7 2.1242 -0.6213 3.6914 7 6 1.8843 -0.1048 4.9129 8 8 1.2641 0.9318 5.0219 9 6 2.3866 -0.8151 6.1434 10 16 1.9079 0.1199 7.6175 11 6 2.6022 -0.9070 8.8698 12 1 3.1314 -1.8081 8.5974 13 6 2.4697 -0.5572 10.2064 14 7 1.8251 0.5414 10.5385 15 14 3.2063 -1.6453 11.5341 16 1 3.8750 -2.8118 10.9036 17 1 4.2012 -0.8680 12.3158 18 1 2.1287 -2.1212 12.4384 19 6 2.0323 -0.7105 -1.2304 20 6 1.7030 -2.0356 -1.4463 21 6 2.1601 -2.6860 -2.5772 22 6 2.9541 -2.0140 -3.4876 23 6 3.2878 -0.6905 -3.2691 24 6 2.8270 -0.0387 -2.1405 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7995 1.2056 30 1 2.0700 1.0675 2.4493 31 1 0.5490 0.1472 2.5389 32 1 2.6205 -1.4502 3.6043 33 1 1.9515 -1.8135 6.1897 34 1 3.4729 -0.8938 6.0995 35 1 1.7322 0.7857 11.4726 36 1 1.0861 -2.5618 -0.7330 37 1 1.8991 -3.7200 -2.7481 38 1 3.3134 -2.5229 -4.3698 39 1 3.9077 -0.1652 -3.9806 40 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299632722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:40 Heat of formation + Delta-G solvation = -35.037006 kcal Electronic energy + Delta-G solvation = -19606.763599 eV Core-core repulsion = 16511.696618 eV Total energy + Delta-G solvation = -3095.066981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.92453 -39.07667 -36.51987 -34.02347 -32.42079 -31.22602 -30.73799 -29.39162 -27.83097 -25.49845 -24.60355 -23.08284 -22.20064 -20.59632 -19.90386 -17.80534 -17.25213 -16.26001 -16.06520 -15.81016 -15.30624 -15.15988 -14.79810 -14.38894 -14.15921 -13.84983 -13.68226 -13.60328 -13.22368 -13.02693 -12.61696 -12.49041 -12.21383 -11.96631 -11.75247 -11.55172 -11.26802 -11.06512 -11.01062 -10.92943 -10.82218 -10.73164 -9.79635 -9.39483 -9.22569 -9.07024 -8.98893 -8.83777 -8.21879 -6.48866 -6.20999 -3.91313 1.04892 1.09504 3.05769 3.13051 3.22092 3.28875 3.33638 3.47947 3.75593 4.21124 4.29770 4.43371 4.69122 4.75439 4.81003 4.84323 4.94714 5.14075 5.14986 5.17407 5.19386 5.22963 5.32812 5.44484 5.60481 5.64199 5.70353 5.75288 5.79348 5.80597 5.91174 5.99888 6.06339 6.15743 6.18049 6.21381 6.36295 6.65355 6.70410 7.60713 7.74250 8.36303 8.64555 9.24427 10.86485 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.038158 B = 0.002213 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.611927 B =12649.350774 C =13040.022387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.049 4.049 3 H 0.082 0.918 4 C -0.122 4.122 5 C 0.119 3.881 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.519 6.519 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.072 4.072 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -5.689 -27.707 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.068 4.068 3 H 0.101 0.899 4 C -0.160 4.160 5 C -0.005 4.005 6 N -0.394 5.394 7 C 0.317 3.683 8 O -0.393 6.393 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.073 4.073 20 C -0.132 4.132 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.136 4.136 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.491 -3.824 -27.378 27.648 hybrid contribution 1.490 -2.335 0.603 2.834 sum 1.980 -6.158 -26.775 27.546 Atomic orbital electron populations 1.21937 0.93892 1.02370 1.02383 1.20093 0.96349 0.99262 0.91138 0.89927 1.21852 1.01716 0.99566 0.92876 1.21342 0.99812 0.96085 0.83230 1.46011 1.59570 1.28202 1.05648 1.20306 0.79073 0.85079 0.83872 1.90700 1.39179 1.23118 1.86285 1.23532 1.04171 1.04108 0.98591 1.85400 1.73423 1.32398 0.92262 1.22910 1.41206 1.11388 0.92752 0.90881 1.25002 0.95106 0.95588 0.97979 1.70029 1.39268 1.22789 1.18202 0.86111 0.78779 0.79900 0.80662 1.19627 1.20574 1.20569 1.19881 0.97190 0.94215 0.95969 1.21036 1.00190 0.94352 0.97632 1.21160 0.98067 0.99902 0.94613 1.21147 0.98922 0.94946 0.99526 1.21149 1.00028 0.94977 0.97595 1.21116 0.97986 0.99991 0.94461 0.91501 0.92471 0.92356 0.91032 0.91075 0.91698 0.91338 0.76888 0.89249 0.89250 0.92247 0.86038 0.86175 0.86308 0.86185 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.76 37.16 0.33 -0.81 16 2 C -0.05 -0.38 2.56 -91.77 -0.24 -0.62 16 3 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 4 C -0.12 -1.01 4.53 -26.73 -0.12 -1.13 16 5 C 0.12 1.37 5.43 -4.04 -0.02 1.35 16 6 N -0.74 -9.94 5.56 -60.30 -0.33 -10.27 16 7 C 0.53 10.03 7.85 -10.99 -0.09 9.94 16 8 O -0.52 -11.94 15.86 5.55 0.09 -11.85 16 9 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 10 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 11 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 12 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 15 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 C -0.07 -0.59 4.78 -104.62 -0.50 -1.09 16 20 C -0.11 -0.89 8.76 -39.58 -0.35 -1.24 16 21 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 22 C -0.13 -0.91 10.05 -39.59 -0.40 -1.31 16 23 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.93 9.67 -39.58 -0.38 -1.31 16 25 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.42 7.41 -51.93 -0.38 0.04 16 28 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.84 6.56 -51.93 -0.34 0.50 16 32 H 0.40 4.16 8.47 -40.82 -0.35 3.81 16 33 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.12 0.83 7.16 -52.49 -0.38 0.45 16 37 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.80 7.95 -52.49 -0.42 0.38 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -34.57 350.27 -9.55 -44.11 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.93 Total: 0.43 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.14 Total: -14.71 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.40 Total: -35.83 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.57 -9.55 -44.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299632722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.073 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds