Wall clock time and date at job start Tue Mar 31 2020 08:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 N 1.46499 * 109.47064 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00172 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99945 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00446 * 179.97438 * 7 6 5 10 10 S 1.81005 * 109.47227 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99593 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00337 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99395 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00267 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99902 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47085 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47381 * 119.99717 * 15 13 11 18 18 H 1.48501 * 109.47348 * 240.00373 * 15 13 11 19 19 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 20 20 C 1.38237 * 119.99936 * 299.72798 * 19 2 1 21 21 C 1.38239 * 120.00019 * 179.79019 * 20 19 2 22 22 C 1.38233 * 119.99539 * 0.43796 * 21 20 19 23 23 C 1.38231 * 120.00493 * 359.81540 * 22 21 20 24 24 C 1.38236 * 119.99974 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 27 27 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 29 29 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 30 30 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 31 31 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 32 32 H 0.97005 * 120.00389 * 359.97438 * 6 5 4 33 33 H 1.09006 * 109.47145 * 299.99721 * 9 7 6 34 34 H 1.09000 * 109.47401 * 59.99638 * 9 7 6 35 35 H 0.97000 * 120.00131 * 179.97438 * 14 13 11 36 36 H 1.07998 * 120.00490 * 359.97438 * 20 19 2 37 37 H 1.08000 * 120.00241 * 180.27418 * 21 20 19 38 38 H 1.08006 * 119.99896 * 179.83904 * 22 21 20 39 39 H 1.08002 * 120.00573 * 180.02562 * 23 22 21 40 40 H 1.08002 * 120.00273 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 7 2.1242 -0.6213 3.6914 7 6 1.8843 -0.1048 4.9129 8 8 1.2641 0.9318 5.0219 9 6 2.3866 -0.8151 6.1434 10 16 1.9079 0.1199 7.6175 11 6 2.6022 -0.9070 8.8698 12 1 3.1314 -1.8081 8.5974 13 6 2.4697 -0.5572 10.2064 14 7 1.8251 0.5414 10.5385 15 14 3.2063 -1.6453 11.5341 16 1 3.8750 -2.8118 10.9036 17 1 4.2012 -0.8680 12.3158 18 1 2.1287 -2.1212 12.4384 19 6 2.0323 -0.7105 -1.2304 20 6 1.7030 -2.0356 -1.4463 21 6 2.1601 -2.6860 -2.5772 22 6 2.9541 -2.0140 -3.4876 23 6 3.2878 -0.6905 -3.2691 24 6 2.8270 -0.0387 -2.1405 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7995 1.2056 30 1 2.0700 1.0675 2.4493 31 1 0.5490 0.1472 2.5389 32 1 2.6205 -1.4502 3.6043 33 1 1.9515 -1.8135 6.1897 34 1 3.4729 -0.8938 6.0995 35 1 1.7322 0.7857 11.4726 36 1 1.0861 -2.5618 -0.7330 37 1 1.8991 -3.7200 -2.7481 38 1 3.3134 -2.5229 -4.3698 39 1 3.9077 -0.1652 -3.9806 40 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299632722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:39 Heat of formation + Delta-G solvation = -56.175927 kcal Electronic energy + Delta-G solvation = -19607.680252 eV Core-core repulsion = 16511.696618 eV Total energy + Delta-G solvation = -3095.983634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74273 -40.26128 -37.36257 -35.14576 -34.58240 -31.86059 -31.71970 -30.41091 -28.79864 -27.65132 -25.39349 -23.67757 -22.88943 -21.86965 -20.72779 -19.78140 -17.89215 -17.75047 -17.12191 -16.87904 -16.84441 -16.19600 -16.03198 -15.64399 -15.37717 -14.79180 -14.64642 -14.42922 -14.29581 -14.10306 -13.95286 -13.49873 -13.15911 -13.14290 -12.91583 -12.75296 -12.64138 -12.56533 -12.13909 -11.97850 -11.71566 -11.53228 -11.46751 -11.15794 -10.94540 -10.27124 -10.08683 -9.76884 -9.55852 -8.66718 -8.34699 -6.12782 0.49555 0.55113 1.27665 1.41732 1.47735 1.58917 1.62101 2.26375 2.31862 2.93538 2.99430 3.32634 3.63294 3.82176 3.97783 4.12365 4.18584 4.23258 4.25369 4.30590 4.36037 4.45870 4.51400 4.54533 4.64909 4.70626 4.74576 4.96350 5.01984 5.06090 5.19599 5.21865 5.29079 5.37372 5.42329 5.47542 5.64279 5.68379 5.79321 6.17653 6.20276 6.52232 7.06655 7.25734 8.74790 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.038158 B = 0.002213 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.611927 B =12649.350774 C =13040.022387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 H 0.082 0.918 4 C -0.109 4.109 5 C 0.119 3.881 6 N -0.713 5.713 7 C 0.532 3.468 8 O -0.567 6.567 9 C -0.130 4.130 10 S -0.154 6.154 11 C -0.545 4.545 12 H 0.083 0.917 13 C 0.011 3.989 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.131 4.131 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.416 0.584 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 -7.933 -28.926 30.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 H 0.100 0.900 4 C -0.146 4.146 5 C -0.005 4.005 6 N -0.367 5.367 7 C 0.317 3.683 8 O -0.446 6.446 9 C -0.281 4.281 10 S 0.073 5.927 11 C -0.692 4.692 12 H 0.101 0.899 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.180 1.180 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.082 4.082 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.146 4.146 24 C -0.149 4.149 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.734 -6.108 -28.651 29.346 hybrid contribution 1.110 -1.648 0.803 2.143 sum 2.843 -7.756 -27.848 29.048 Atomic orbital electron populations 1.21918 0.93923 1.02586 1.02011 1.20029 0.96266 0.99208 0.90892 0.89990 1.21753 1.02132 0.99541 0.91211 1.21479 0.99387 0.96150 0.83453 1.45776 1.58129 1.28375 1.04456 1.20083 0.78773 0.84443 0.84961 1.90689 1.41644 1.25240 1.87014 1.23377 1.05430 1.03681 0.95586 1.85589 1.74613 1.35597 0.96855 1.23235 1.41218 1.11553 0.93240 0.89878 1.26153 0.95350 0.97082 1.00744 1.70192 1.40784 1.24902 1.18924 0.84886 0.77943 0.77997 0.76985 1.18001 1.19949 1.19917 1.19913 0.97664 0.94506 0.96096 1.21213 1.00454 0.94387 0.98155 1.21436 0.97935 1.00790 0.94481 1.21446 0.98685 0.95057 1.00120 1.21417 1.00141 0.95327 0.97760 1.21326 0.98213 1.00574 0.94814 0.92376 0.92330 0.91846 0.89811 0.90437 0.92634 0.91965 0.74691 0.87146 0.87212 0.91998 0.85235 0.84626 0.84590 0.84667 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.76 71.98 0.63 -1.47 16 2 C -0.04 -0.64 2.56 -11.54 -0.03 -0.67 16 3 H 0.08 1.17 7.88 -2.39 -0.02 1.15 16 4 C -0.11 -1.57 4.53 30.59 0.14 -1.43 16 5 C 0.12 2.58 5.43 86.38 0.47 3.05 16 6 N -0.71 -17.84 5.56 -463.07 -2.57 -20.41 16 7 C 0.53 19.74 7.85 87.66 0.69 20.42 16 8 O -0.57 -26.61 15.86 -3.04 -0.05 -26.66 16 9 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 10 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 11 C -0.54 -31.21 9.50 67.95 0.65 -30.57 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.65 5.49 84.86 0.47 1.11 16 14 N -0.91 -56.25 13.22 21.65 0.29 -55.97 16 15 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 C -0.08 -1.20 4.78 -19.87 -0.09 -1.29 16 20 C -0.12 -1.72 8.76 22.27 0.20 -1.52 16 21 C -0.13 -1.65 10.05 22.27 0.22 -1.42 16 22 C -0.14 -1.68 10.05 22.27 0.22 -1.46 16 23 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 24 C -0.13 -1.89 9.67 22.27 0.22 -1.68 16 25 H 0.06 0.93 6.56 -2.39 -0.02 0.91 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.83 7.41 -2.39 -0.02 0.81 16 28 H 0.08 1.05 7.56 -2.38 -0.02 1.03 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.48 6.56 -2.39 -0.02 1.47 16 32 H 0.42 7.43 8.47 -92.70 -0.79 6.65 16 33 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 34 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.13 1.49 7.16 -2.91 -0.02 1.47 16 37 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 40 H 0.13 1.55 7.95 -2.91 -0.02 1.53 16 Total: -1.00 -76.32 350.27 3.21 -73.11 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.24 Total: 17.04 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.43 Total: -23.09 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -2.29 Total: -76.38 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -76.32 3.21 -73.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299632722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.937 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds