Wall clock time and date at job start Tue Mar 31 2020 07:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.62709 * 2 1 4 4 C 1.53247 * 109.63435 * 120.59738 * 2 1 3 5 5 N 1.46470 * 109.86068 * 181.70705 * 4 2 1 6 6 C 1.46899 * 110.99917 * 162.23426 * 5 4 2 7 7 C 1.50692 * 109.47055 * 59.93545 * 6 5 4 8 8 C 1.38633 * 119.75076 * 269.72274 * 7 6 5 9 9 C 1.37622 * 120.25100 * 179.71857 * 8 7 6 10 10 C 1.40719 * 119.73977 * 0.57809 * 9 8 7 11 11 C 1.41396 * 120.24048 * 179.67689 * 10 9 8 12 12 H 1.07999 * 120.00351 * 24.41082 * 11 10 9 13 13 C 1.39953 * 120.00037 * 204.41165 * 11 10 9 14 14 N 1.30825 * 119.99485 * 17.85689 * 13 11 10 15 15 Si 1.86790 * 120.00006 * 197.85999 * 13 11 10 16 16 H 1.48500 * 109.47379 * 89.99540 * 15 13 11 17 17 H 1.48496 * 109.47261 * 209.99991 * 15 13 11 18 18 H 1.48502 * 109.47260 * 329.99767 * 15 13 11 19 19 C 1.40710 * 119.51333 * 359.70123 * 10 9 8 20 20 C 1.37611 * 119.74594 * 0.02562 * 19 10 9 21 21 C 1.46465 * 112.55662 * 287.34612 * 5 4 2 22 22 C 1.53249 * 109.86253 * 72.65755 * 21 5 4 23 23 S 1.81897 * 108.50234 * 297.99247 * 22 21 5 24 24 O 1.42104 * 109.46764 * 167.14998 * 23 22 21 25 25 H 1.09000 * 109.46669 * 180.39307 * 1 2 3 26 26 H 1.08994 * 109.46975 * 60.38583 * 1 2 3 27 27 H 1.09003 * 109.46905 * 300.38745 * 1 2 3 28 28 H 1.08998 * 109.40391 * 301.82512 * 4 2 1 29 29 H 1.08998 * 109.40438 * 61.58819 * 4 2 1 30 30 H 1.09006 * 109.46996 * 179.97438 * 6 5 4 31 31 H 1.08995 * 109.46969 * 299.93374 * 6 5 4 32 32 H 1.08007 * 119.87480 * 359.97438 * 8 7 6 33 33 H 1.08002 * 120.12768 * 180.27545 * 9 8 7 34 34 H 0.97001 * 119.99042 * 180.02562 * 14 13 11 35 35 H 1.08003 * 120.12898 * 179.97438 * 19 10 9 36 36 H 1.08004 * 119.87695 * 180.02562 * 20 19 10 37 37 H 1.08997 * 109.40736 * 312.53248 * 21 5 4 38 38 H 1.09007 * 109.33700 * 192.73568 * 21 5 4 39 39 H 1.09000 * 109.62730 * 178.29172 * 22 21 5 40 40 H 1.08994 * 109.79397 * 57.80042 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0450 -0.7347 1.2424 5 7 3.5091 -0.7024 1.2684 6 6 4.0186 -1.0090 2.6117 7 6 3.5569 -2.3834 3.0224 8 6 2.3568 -2.5319 3.7005 9 6 1.9225 -3.7829 4.0753 10 6 2.7076 -4.9123 3.7786 11 6 2.2748 -6.2018 4.1648 12 1 1.2234 -6.3952 4.3183 13 6 3.2090 -7.2277 4.3482 14 7 4.4746 -6.9386 4.5096 15 14 2.6486 -9.0095 4.3626 16 1 2.6930 -9.5536 2.9815 17 1 3.5481 -9.8043 5.2369 18 1 1.2591 -9.0873 4.8807 19 6 3.9267 -4.7490 3.0951 20 6 4.3384 -3.4892 2.7250 21 6 4.1085 -1.5855 0.2654 22 6 3.9230 -0.9866 -1.1330 23 16 2.1411 -0.8667 -1.4779 24 8 1.9343 -0.0523 -2.6239 25 1 -0.3633 -1.0277 0.0071 26 1 -0.3633 0.5078 -0.8934 27 1 -0.3633 0.5199 0.8865 28 1 1.6560 -0.2491 2.1374 29 1 1.7059 -1.7703 1.2172 30 1 5.1082 -0.9787 2.6027 31 1 3.6410 -0.2720 3.3204 32 1 1.7585 -1.6630 3.9318 33 1 0.9852 -3.8967 4.5996 34 1 5.1221 -7.6497 4.6364 35 1 4.5373 -5.6090 2.8626 36 1 5.2736 -3.3614 2.1999 37 1 3.6261 -2.5620 0.3081 38 1 5.1726 -1.6978 0.4731 39 1 4.3967 -1.6315 -1.8732 40 1 4.3713 0.0061 -1.1718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334248356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:33 Heat of formation + Delta-G solvation = -21.240348 kcal Electronic energy + Delta-G solvation = -21500.934494 eV Core-core repulsion = 18406.465781 eV Total energy + Delta-G solvation = -3094.468713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.86133 -36.89540 -35.56004 -33.97588 -33.31399 -31.37971 -29.67388 -29.12703 -27.00606 -25.43972 -23.59972 -22.24302 -21.02694 -20.83569 -19.78566 -17.39601 -17.32636 -15.91405 -15.46648 -15.40892 -15.26804 -14.72773 -14.56859 -14.22534 -13.92932 -13.59428 -13.13664 -12.69394 -12.55750 -12.45256 -12.23532 -12.09122 -11.91330 -11.64529 -11.62735 -11.29388 -11.21597 -11.06069 -10.90865 -10.72202 -10.66827 -10.41083 -9.81059 -9.62575 -9.45421 -9.20913 -8.14512 -8.03279 -7.55267 -7.39667 -6.84748 -4.44138 1.63753 2.60482 2.65463 2.97077 3.02589 3.05471 3.11145 3.83730 3.86432 4.13132 4.54473 4.85951 5.01793 5.13570 5.25129 5.31307 5.44450 5.56317 5.61683 5.72356 5.81138 5.94484 5.98851 5.99554 6.04450 6.12578 6.20458 6.27433 6.29916 6.38074 6.86012 6.98682 7.15728 7.23653 7.31705 7.38451 7.52335 7.76551 7.96831 8.02569 8.21261 8.55525 8.80912 8.88396 10.09189 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.003968 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.837471 B = 7055.265536 C = 7172.157944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.394 4.394 3 H 0.093 0.907 4 C 0.086 3.914 5 N -0.554 5.554 6 C 0.121 3.879 7 C -0.256 4.256 8 C -0.077 4.077 9 C -0.227 4.227 10 C 0.114 3.886 11 C -0.462 4.462 12 H 0.078 0.922 13 C 0.077 3.923 14 N -0.790 5.790 15 Si 0.907 3.093 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.167 4.167 20 C -0.088 4.088 21 C 0.080 3.920 22 C -0.428 4.428 23 S 1.222 4.778 24 O -0.865 6.865 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.281 0.719 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 5.387 -5.842 8.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.513 4.513 3 H 0.112 0.888 4 C -0.043 4.043 5 N -0.277 5.277 6 C -0.005 4.005 7 C -0.259 4.259 8 C -0.096 4.096 9 C -0.247 4.247 10 C 0.111 3.889 11 C -0.491 4.491 12 H 0.096 0.904 13 C -0.142 4.142 14 N -0.415 5.415 15 Si 0.732 3.268 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.186 4.186 20 C -0.108 4.108 21 C -0.049 4.049 22 C -0.567 4.567 23 S 1.422 4.578 24 O -0.860 6.860 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.712 5.455 -6.734 9.081 hybrid contribution 0.735 0.435 0.643 1.070 sum -1.976 5.890 -6.091 8.701 Atomic orbital electron populations 1.21407 0.91521 1.03005 1.02528 1.27323 1.02507 1.09112 1.12344 0.88848 1.21676 0.87597 0.99499 0.95524 1.61639 1.06607 1.53184 1.06259 1.20774 0.98702 0.93724 0.87314 1.19627 0.99180 0.94498 1.12560 1.20372 0.95292 0.95813 0.98144 1.20962 1.02201 0.92495 1.09030 1.17629 0.91113 0.92252 0.87896 1.19638 0.94764 0.93920 1.40767 0.90408 1.25917 0.94437 1.01612 0.92196 1.69825 1.02809 1.35267 1.33644 0.86320 0.79857 0.81485 0.79150 1.19180 1.20333 1.18589 1.21310 0.99317 0.95749 1.02223 1.20527 0.97222 0.93159 0.99847 1.21587 1.00948 0.94528 0.87802 1.27558 1.19333 1.06544 1.03266 1.70575 0.90182 1.14393 0.82678 1.93051 1.80973 1.72613 1.39409 0.91145 0.92444 0.91486 0.90314 0.92022 0.91513 0.91575 0.89717 0.89154 0.90805 0.86551 0.89726 0.92072 0.90281 0.86920 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.23 37.16 0.34 -0.97 16 2 C -0.39 -4.79 3.32 -26.60 -0.09 -4.88 16 3 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 4 C 0.09 1.13 3.45 -3.93 -0.01 1.12 16 5 N -0.55 -7.83 4.58 -236.49 -1.08 -8.92 16 6 C 0.12 1.89 5.42 -4.98 -0.03 1.86 16 7 C -0.26 -4.80 4.22 -104.33 -0.44 -5.24 16 8 C -0.08 -1.52 8.33 -39.66 -0.33 -1.85 16 9 C -0.23 -5.09 9.80 -38.87 -0.38 -5.47 16 10 C 0.11 2.80 5.58 -106.83 -0.60 2.20 16 11 C -0.46 -11.51 9.05 -37.74 -0.34 -11.85 16 12 H 0.08 1.87 7.91 -52.49 -0.41 1.46 16 13 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 14 N -0.79 -19.41 10.95 55.55 0.61 -18.80 16 15 Si 0.91 17.70 29.59 -169.99 -5.03 12.67 16 16 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 17 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 19 C -0.17 -3.95 8.70 -38.88 -0.34 -4.29 16 20 C -0.09 -1.82 8.42 -39.66 -0.33 -2.15 16 21 C 0.08 1.06 4.38 -3.93 -0.02 1.05 16 22 C -0.43 -5.17 6.67 37.29 0.25 -4.92 16 23 S 1.22 14.95 13.19 -107.50 -1.42 13.53 16 24 O -0.87 -15.37 18.14 -35.23 -0.64 -16.01 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.04 7.50 -51.93 -0.39 0.65 16 29 H 0.06 0.85 7.12 -51.93 -0.37 0.48 16 30 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 31 H 0.07 1.00 8.01 -51.93 -0.42 0.58 16 32 H 0.08 1.47 7.65 -52.48 -0.40 1.07 16 33 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 34 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 35 H 0.12 2.90 6.16 -52.48 -0.32 2.58 16 36 H 0.08 1.58 8.02 -52.48 -0.42 1.16 16 37 H 0.06 0.83 7.14 -51.93 -0.37 0.46 16 38 H 0.08 1.04 7.81 -51.93 -0.41 0.64 16 39 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -29.43 329.86 -11.01 -40.44 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.01 Total: 5.78 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: -2.40 Total: -33.66 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: -0.48 Total: -27.72 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.64 Total: -16.01 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 14.95 SS G_CDS: -1.42 Total: 13.53 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.43 -11.01 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334248356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.201 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds