Wall clock time and date at job start Tue Mar 31 2020 07:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.62709 * 2 1 4 4 C 1.53247 * 109.63435 * 120.59738 * 2 1 3 5 5 N 1.46470 * 109.86068 * 181.70705 * 4 2 1 6 6 C 1.46899 * 110.99917 * 162.23426 * 5 4 2 7 7 C 1.50692 * 109.47055 * 59.93545 * 6 5 4 8 8 C 1.38633 * 119.75076 * 269.72274 * 7 6 5 9 9 C 1.37622 * 120.25100 * 179.71857 * 8 7 6 10 10 C 1.40719 * 119.73977 * 0.57809 * 9 8 7 11 11 C 1.41396 * 120.24048 * 179.67689 * 10 9 8 12 12 H 1.07999 * 120.00351 * 24.41082 * 11 10 9 13 13 C 1.39953 * 120.00037 * 204.41165 * 11 10 9 14 14 N 1.30825 * 119.99485 * 17.85689 * 13 11 10 15 15 Si 1.86790 * 120.00006 * 197.85999 * 13 11 10 16 16 H 1.48500 * 109.47379 * 89.99540 * 15 13 11 17 17 H 1.48496 * 109.47261 * 209.99991 * 15 13 11 18 18 H 1.48502 * 109.47260 * 329.99767 * 15 13 11 19 19 C 1.40710 * 119.51333 * 359.70123 * 10 9 8 20 20 C 1.37611 * 119.74594 * 0.02562 * 19 10 9 21 21 C 1.46465 * 112.55662 * 287.34612 * 5 4 2 22 22 C 1.53249 * 109.86253 * 72.65755 * 21 5 4 23 23 S 1.81897 * 108.50234 * 297.99247 * 22 21 5 24 24 O 1.42104 * 109.46764 * 167.14998 * 23 22 21 25 25 H 1.09000 * 109.46669 * 180.39307 * 1 2 3 26 26 H 1.08994 * 109.46975 * 60.38583 * 1 2 3 27 27 H 1.09003 * 109.46905 * 300.38745 * 1 2 3 28 28 H 1.08998 * 109.40391 * 301.82512 * 4 2 1 29 29 H 1.08998 * 109.40438 * 61.58819 * 4 2 1 30 30 H 1.09006 * 109.46996 * 179.97438 * 6 5 4 31 31 H 1.08995 * 109.46969 * 299.93374 * 6 5 4 32 32 H 1.08007 * 119.87480 * 359.97438 * 8 7 6 33 33 H 1.08002 * 120.12768 * 180.27545 * 9 8 7 34 34 H 0.97001 * 119.99042 * 180.02562 * 14 13 11 35 35 H 1.08003 * 120.12898 * 179.97438 * 19 10 9 36 36 H 1.08004 * 119.87695 * 180.02562 * 20 19 10 37 37 H 1.08997 * 109.40736 * 312.53248 * 21 5 4 38 38 H 1.09007 * 109.33700 * 192.73568 * 21 5 4 39 39 H 1.09000 * 109.62730 * 178.29172 * 22 21 5 40 40 H 1.08994 * 109.79397 * 57.80042 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0450 -0.7347 1.2424 5 7 3.5091 -0.7024 1.2684 6 6 4.0186 -1.0090 2.6117 7 6 3.5569 -2.3834 3.0224 8 6 2.3568 -2.5319 3.7005 9 6 1.9225 -3.7829 4.0753 10 6 2.7076 -4.9123 3.7786 11 6 2.2748 -6.2018 4.1648 12 1 1.2234 -6.3952 4.3183 13 6 3.2090 -7.2277 4.3482 14 7 4.4746 -6.9386 4.5096 15 14 2.6486 -9.0095 4.3626 16 1 2.6930 -9.5536 2.9815 17 1 3.5481 -9.8043 5.2369 18 1 1.2591 -9.0873 4.8807 19 6 3.9267 -4.7490 3.0951 20 6 4.3384 -3.4892 2.7250 21 6 4.1085 -1.5855 0.2654 22 6 3.9230 -0.9866 -1.1330 23 16 2.1411 -0.8667 -1.4779 24 8 1.9343 -0.0523 -2.6239 25 1 -0.3633 -1.0277 0.0071 26 1 -0.3633 0.5078 -0.8934 27 1 -0.3633 0.5199 0.8865 28 1 1.6560 -0.2491 2.1374 29 1 1.7059 -1.7703 1.2172 30 1 5.1082 -0.9787 2.6027 31 1 3.6410 -0.2720 3.3204 32 1 1.7585 -1.6630 3.9318 33 1 0.9852 -3.8967 4.5996 34 1 5.1221 -7.6497 4.6364 35 1 4.5373 -5.6090 2.8626 36 1 5.2736 -3.3614 2.1999 37 1 3.6261 -2.5620 0.3081 38 1 5.1726 -1.6978 0.4731 39 1 4.3967 -1.6315 -1.8732 40 1 4.3713 0.0061 -1.1718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334248356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:32 Heat of formation + Delta-G solvation = -39.548401 kcal Electronic energy + Delta-G solvation = -21501.728391 eV Core-core repulsion = 18406.465781 eV Total energy + Delta-G solvation = -3095.262610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23635 -38.37004 -36.79702 -35.55868 -34.43748 -32.73373 -31.26493 -30.65516 -28.30742 -26.77330 -24.97900 -23.38925 -22.47084 -22.27581 -21.22776 -19.14436 -18.41434 -17.16760 -16.98764 -16.55435 -16.40511 -15.97635 -15.84048 -15.51697 -15.40396 -15.17676 -14.44057 -14.04193 -13.86561 -13.56678 -13.45586 -13.42418 -13.22614 -13.13068 -12.86320 -12.69573 -12.56760 -12.38953 -12.24131 -12.08879 -11.97312 -11.75021 -11.46510 -11.17075 -10.93902 -10.68492 -9.31480 -9.23843 -9.20903 -9.06010 -8.58058 -6.26803 0.62450 1.01167 1.24588 1.42324 1.53943 1.55409 1.60417 2.24464 2.71883 2.78852 3.07400 3.82330 3.83432 4.00892 4.13922 4.22956 4.25002 4.39624 4.49827 4.55708 4.63045 4.72175 4.76162 4.85523 4.95835 4.98160 5.05494 5.08962 5.15495 5.21488 5.22960 5.26270 5.46854 5.55020 5.78823 6.02908 6.12924 6.17153 6.19764 6.39816 6.48424 6.79673 7.02324 7.12540 8.37449 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.003968 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.837471 B = 7055.265536 C = 7172.157944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.386 4.386 3 H 0.082 0.918 4 C 0.086 3.914 5 N -0.554 5.554 6 C 0.126 3.874 7 C -0.233 4.233 8 C -0.074 4.074 9 C -0.241 4.241 10 C 0.082 3.918 11 C -0.501 4.501 12 H 0.072 0.928 13 C 0.038 3.962 14 N -0.826 5.826 15 Si 0.976 3.024 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.260 1.260 19 C -0.189 4.189 20 C -0.088 4.088 21 C 0.078 3.922 22 C -0.422 4.422 23 S 1.256 4.744 24 O -0.920 6.920 25 H 0.086 0.914 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.286 0.714 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 6.207 -6.008 9.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.506 4.506 3 H 0.101 0.899 4 C -0.043 4.043 5 N -0.276 5.276 6 C -0.001 4.001 7 C -0.236 4.236 8 C -0.093 4.093 9 C -0.260 4.260 10 C 0.079 3.921 11 C -0.531 4.531 12 H 0.090 0.910 13 C -0.176 4.176 14 N -0.452 5.452 15 Si 0.797 3.203 16 H -0.186 1.186 17 H -0.197 1.197 18 H -0.184 1.184 19 C -0.209 4.209 20 C -0.107 4.107 21 C -0.051 4.051 22 C -0.561 4.561 23 S 1.457 4.543 24 O -0.915 6.915 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.151 0.849 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.878 6.292 -6.918 9.784 hybrid contribution 0.820 0.374 0.701 1.142 sum -2.058 6.666 -6.217 9.344 Atomic orbital electron populations 1.21483 0.90092 1.04312 1.02892 1.27236 1.03778 1.08148 1.11398 0.89948 1.21723 0.86950 0.99483 0.96179 1.61658 1.07256 1.53181 1.05547 1.20793 0.99394 0.91652 0.88284 1.20024 0.97978 0.95742 1.09835 1.20668 0.95716 0.95705 0.97203 1.21141 1.02273 0.93166 1.09462 1.17940 0.92143 0.93069 0.88917 1.19849 0.94866 0.95292 1.43104 0.90962 1.26653 0.94305 1.05320 0.91358 1.69879 1.03802 1.36578 1.34935 0.85294 0.79322 0.76387 0.79286 1.18615 1.19666 1.18390 1.21254 0.99411 0.96503 1.03728 1.20748 0.98077 0.92493 0.99343 1.21644 1.01185 0.94256 0.88017 1.27493 1.18862 1.06493 1.03248 1.70037 0.89861 1.13043 0.81333 1.92959 1.82281 1.73899 1.42400 0.89471 0.92844 0.90398 0.89696 0.92306 0.90638 0.90244 0.86726 0.89035 0.90344 0.88624 0.87787 0.92355 0.89814 0.84888 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.23 71.98 0.66 -1.73 16 2 C -0.39 -8.54 3.32 30.68 0.10 -8.43 16 3 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 4 C 0.09 2.00 3.45 86.47 0.30 2.30 16 5 N -0.55 -13.95 4.58 -902.12 -4.14 -18.09 16 6 C 0.13 3.47 5.42 85.55 0.46 3.94 16 7 C -0.23 -8.16 4.22 -19.68 -0.08 -8.25 16 8 C -0.07 -2.75 8.33 22.22 0.19 -2.57 16 9 C -0.24 -10.71 9.80 22.73 0.22 -10.48 16 10 C 0.08 4.10 5.58 -21.29 -0.12 3.98 16 11 C -0.50 -25.83 9.05 23.46 0.21 -25.62 16 12 H 0.07 3.62 7.91 -2.91 -0.02 3.60 16 13 C 0.04 1.86 5.14 85.26 0.44 2.30 16 14 N -0.83 -41.70 10.95 21.83 0.24 -41.46 16 15 Si 0.98 36.85 29.59 68.60 2.03 38.88 16 16 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 17 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 18 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 19 C -0.19 -9.11 8.70 22.73 0.20 -8.91 16 20 C -0.09 -3.50 8.42 22.22 0.19 -3.31 16 21 C 0.08 1.86 4.38 86.47 0.38 2.23 16 22 C -0.42 -9.24 6.67 72.07 0.48 -8.76 16 23 S 1.26 28.76 13.19 -56.49 -0.74 28.02 16 24 O -0.92 -31.96 18.14 -148.98 -2.70 -34.67 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.93 7.50 -2.39 -0.02 1.91 16 29 H 0.06 1.44 7.12 -2.39 -0.02 1.43 16 30 H 0.08 2.02 7.87 -2.38 -0.02 2.00 16 31 H 0.08 2.05 8.01 -2.39 -0.02 2.04 16 32 H 0.11 3.56 7.65 -2.91 -0.02 3.54 16 33 H 0.09 3.93 8.06 -2.91 -0.02 3.91 16 34 H 0.29 13.12 8.30 -92.71 -0.77 12.36 16 35 H 0.10 4.94 6.16 -2.91 -0.02 4.92 16 36 H 0.10 3.68 8.02 -2.91 -0.02 3.66 16 37 H 0.06 1.45 7.14 -2.39 -0.02 1.43 16 38 H 0.08 1.96 7.81 -2.38 -0.02 1.94 16 39 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.14 329.86 -0.67 -64.81 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 1.02 Total: 25.82 kcal Atomic # 6 Polarization: -66.95 SS G_CDS: 3.63 Total: -63.32 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -3.90 Total: -59.55 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -2.70 Total: -34.67 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Atomic # 16 Polarization: 28.76 SS G_CDS: -0.74 Total: 28.02 kcal Total: -64.14 -0.67 -64.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334248356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.261 kcal (2) G-P(sol) polarization free energy of solvation -64.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds