Wall clock time and date at job start Tue Mar 31 2020 07:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.78878 * 2 1 4 4 C 1.53246 * 109.62871 * 239.50437 * 2 1 3 5 5 N 1.46474 * 109.85922 * 178.29055 * 4 2 1 6 6 C 1.46902 * 111.00041 * 197.76996 * 5 4 2 7 7 C 1.50700 * 109.46916 * 300.06417 * 6 5 4 8 8 C 1.38637 * 119.74820 * 269.72705 * 7 6 5 9 9 C 1.37623 * 120.24551 * 179.76382 * 8 7 6 10 10 C 1.40718 * 119.74367 * 0.53166 * 9 8 7 11 11 C 1.41399 * 120.24298 * 179.74472 * 10 9 8 12 12 H 1.07997 * 119.99559 * 150.22284 * 11 10 9 13 13 C 1.39949 * 119.99852 * 330.21744 * 11 10 9 14 14 N 1.30818 * 119.99839 * 161.72869 * 13 11 10 15 15 Si 1.86803 * 120.00021 * 341.72553 * 13 11 10 16 16 H 1.48505 * 109.46716 * 95.41373 * 15 13 11 17 17 H 1.48495 * 109.47077 * 215.41060 * 15 13 11 18 18 H 1.48503 * 109.47130 * 335.41381 * 15 13 11 19 19 C 1.40724 * 119.51247 * 359.72369 * 10 9 8 20 20 C 1.37617 * 119.74133 * 359.97438 * 19 10 9 21 21 C 1.46462 * 112.55529 * 72.65891 * 5 4 2 22 22 C 1.53246 * 109.86157 * 287.34311 * 21 5 4 23 23 S 1.81899 * 109.62960 * 120.49298 * 2 1 3 24 24 O 1.42102 * 109.46865 * 55.17032 * 23 2 1 25 25 H 1.09002 * 109.47052 * 299.50425 * 1 2 3 26 26 H 1.08999 * 109.47185 * 59.50294 * 1 2 3 27 27 H 1.08996 * 109.47032 * 179.50703 * 1 2 3 28 28 H 1.09007 * 109.40679 * 58.17563 * 4 2 1 29 29 H 1.08994 * 109.40800 * 298.41160 * 4 2 1 30 30 H 1.09004 * 109.46431 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47067 * 60.07001 * 6 5 4 32 32 H 1.07993 * 119.87495 * 0.02562 * 8 7 6 33 33 H 1.07996 * 120.12915 * 180.27936 * 9 8 7 34 34 H 0.96994 * 120.00294 * 180.02562 * 14 13 11 35 35 H 1.07996 * 120.12709 * 180.02562 * 19 10 9 36 36 H 1.08002 * 119.87224 * 180.02562 * 20 19 10 37 37 H 1.08998 * 109.41139 * 47.46419 * 21 5 4 38 38 H 1.09002 * 109.40575 * 167.30415 * 21 5 4 39 39 H 1.09005 * 109.63710 * 181.70967 * 22 21 5 40 40 H 1.08997 * 109.63499 * 302.10067 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8991 1.0257 0.0000 4 6 2.0448 -0.7325 -1.2437 5 7 3.5090 -0.7002 -1.2698 6 6 4.0184 -1.0043 -2.6137 7 6 3.5567 -2.3780 -3.0269 8 6 4.3407 -3.4837 -2.7360 9 6 3.9266 -4.7435 -3.1043 10 6 2.7077 -4.9055 -3.7884 11 6 2.2747 -6.1943 -4.1765 12 1 1.2190 -6.4110 -4.2461 13 6 3.2141 -7.1891 -4.4706 14 7 2.8544 -8.4468 -4.4783 15 14 4.9818 -6.7208 -4.8522 16 1 5.7989 -6.8236 -3.6164 17 1 5.5259 -7.6406 -5.8833 18 1 5.0258 -5.3261 -5.3602 19 6 1.9226 -3.7754 -4.0831 20 6 2.3536 -2.5259 -3.6996 21 6 4.1084 -1.5851 -0.2685 22 6 3.9230 -0.9889 1.1310 23 16 2.1411 -0.8694 1.4763 24 8 1.5795 -2.1738 1.5242 25 1 -0.3633 0.5061 0.8944 26 1 -0.3633 0.5215 -0.8855 27 1 -0.3633 -1.0276 -0.0088 28 1 1.6559 -0.2453 -2.1379 29 1 1.7058 -1.7681 -1.2204 30 1 5.1080 -0.9740 -2.6046 31 1 3.6409 -0.2660 -3.3211 32 1 5.2779 -3.3565 -2.2147 33 1 4.5368 -5.6040 -2.8727 34 1 3.5055 -9.1363 -4.6817 35 1 0.9852 -3.8883 -4.6074 36 1 1.7525 -1.6572 -3.9243 37 1 3.6261 -2.5616 -0.3129 38 1 5.1728 -1.6973 -0.4750 39 1 4.3967 -1.6350 1.8701 40 1 4.3737 0.0029 1.1692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334248357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:37 Heat of formation + Delta-G solvation = -17.973565 kcal Electronic energy + Delta-G solvation = -21822.876285 eV Core-core repulsion = 18728.549230 eV Total energy + Delta-G solvation = -3094.327055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.00959 -37.07142 -35.51937 -33.91224 -33.34690 -31.68251 -29.87085 -29.67722 -27.11156 -25.44402 -23.46797 -22.31948 -21.33538 -20.82522 -19.91569 -17.60973 -17.48178 -15.98594 -15.67075 -15.48740 -15.35013 -14.81468 -14.48317 -14.04866 -13.88166 -13.64399 -13.32269 -12.91428 -12.72111 -12.47863 -12.44872 -12.31864 -12.00610 -11.83097 -11.61906 -11.44003 -11.13176 -11.07604 -11.02460 -10.81388 -10.59968 -10.27263 -10.01383 -9.66129 -9.58407 -9.19140 -8.29194 -7.99710 -7.77497 -7.57092 -6.99987 -4.53169 1.69466 2.48284 2.59226 2.63616 3.06413 3.16919 3.27341 3.82626 3.94129 4.11645 4.45841 4.79883 4.91844 5.10101 5.24433 5.32219 5.36348 5.37374 5.52508 5.67086 5.71061 5.78631 5.92477 5.92886 6.00594 6.03728 6.06273 6.11336 6.18764 6.27778 6.51074 6.75288 6.84180 7.11177 7.16714 7.21598 7.38443 7.51337 7.73621 7.82725 8.07640 8.30514 8.60823 8.75205 10.02377 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.004551 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.088876 B = 6151.681300 C = 6233.060625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.398 4.398 3 H 0.126 0.874 4 C 0.065 3.935 5 N -0.544 5.544 6 C 0.120 3.880 7 C -0.260 4.260 8 C -0.064 4.064 9 C -0.239 4.239 10 C 0.096 3.904 11 C -0.446 4.446 12 H 0.090 0.910 13 C 0.084 3.916 14 N -0.806 5.806 15 Si 0.914 3.086 16 H -0.271 1.271 17 H -0.290 1.290 18 H -0.245 1.245 19 C -0.211 4.211 20 C -0.069 4.069 21 C 0.059 3.941 22 C -0.433 4.433 23 S 1.226 4.774 24 O -0.844 6.844 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.286 0.714 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 18.297 10.109 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.516 4.516 3 H 0.144 0.856 4 C -0.063 4.063 5 N -0.267 5.267 6 C -0.006 4.006 7 C -0.262 4.262 8 C -0.083 4.083 9 C -0.258 4.258 10 C 0.093 3.907 11 C -0.475 4.475 12 H 0.108 0.892 13 C -0.135 4.135 14 N -0.430 5.430 15 Si 0.740 3.260 16 H -0.197 1.197 17 H -0.217 1.217 18 H -0.168 1.168 19 C -0.230 4.230 20 C -0.088 4.088 21 C -0.070 4.070 22 C -0.571 4.571 23 S 1.423 4.577 24 O -0.839 6.839 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.465 18.123 10.979 21.240 hybrid contribution 1.050 -2.046 -2.325 3.270 sum 2.515 16.077 8.654 18.430 Atomic orbital electron populations 1.21431 0.91969 1.02855 1.02523 1.27389 1.02269 1.09487 1.12448 0.85591 1.21945 0.87804 0.99481 0.97114 1.61708 1.06376 1.52536 1.06037 1.20802 0.98793 0.93349 0.87649 1.19681 0.99217 0.94788 1.12543 1.20443 0.97065 0.92806 0.97954 1.21014 1.00825 0.95889 1.08067 1.17751 0.90887 0.93144 0.88922 1.19536 0.96216 0.92598 1.39122 0.89163 1.26177 1.01542 0.94006 0.91784 1.69695 1.37975 1.00945 1.34336 0.86278 0.80976 0.80342 0.78384 1.19736 1.21743 1.16792 1.21019 1.02107 0.92095 1.07779 1.20484 0.94999 0.96122 0.97155 1.21833 1.00928 0.94631 0.89564 1.27616 1.19999 1.07560 1.01931 1.70060 0.86058 0.99340 1.02200 1.93172 1.71609 1.38831 1.80337 0.91723 0.91692 0.92083 0.90547 0.93178 0.91299 0.91152 0.89294 0.88331 0.90382 0.88283 0.89151 0.93293 0.90599 0.87622 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.19 37.16 0.34 -1.01 16 2 C -0.40 -4.37 3.32 -26.60 -0.09 -4.46 16 3 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.07 0.98 3.45 -3.93 -0.01 0.97 16 5 N -0.54 -8.07 4.59 -236.48 -1.08 -9.16 16 6 C 0.12 1.96 5.42 -4.97 -0.03 1.93 16 7 C -0.26 -5.30 4.22 -104.33 -0.44 -5.74 16 8 C -0.06 -1.42 8.43 -39.66 -0.33 -1.75 16 9 C -0.24 -6.02 7.18 -38.87 -0.28 -6.30 16 10 C 0.10 2.55 5.11 -106.82 -0.55 2.00 16 11 C -0.45 -12.57 9.57 -37.74 -0.36 -12.94 16 12 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 13 C 0.08 2.28 5.40 -17.34 -0.09 2.19 16 14 N -0.81 -22.09 13.93 55.55 0.77 -21.32 16 15 Si 0.91 21.50 24.52 -169.99 -4.17 17.33 16 16 H -0.27 -6.23 6.71 56.52 0.38 -5.85 16 17 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.24 -5.90 6.86 56.52 0.39 -5.51 16 19 C -0.21 -5.10 9.80 -38.87 -0.38 -5.49 16 20 C -0.07 -1.47 8.31 -39.66 -0.33 -1.80 16 21 C 0.06 0.90 4.39 -3.94 -0.02 0.88 16 22 C -0.43 -4.73 6.67 37.28 0.25 -4.48 16 23 S 1.23 13.35 13.21 -107.50 -1.42 11.93 16 24 O -0.84 -15.59 18.09 -35.23 -0.64 -16.22 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.12 7.47 -51.93 -0.39 0.73 16 29 H 0.05 0.98 7.10 -51.93 -0.37 0.61 16 30 H 0.07 1.05 7.87 -51.93 -0.41 0.65 16 31 H 0.07 1.06 8.01 -51.93 -0.42 0.65 16 32 H 0.09 1.77 8.04 -52.49 -0.42 1.35 16 33 H 0.10 2.50 4.73 -52.49 -0.25 2.25 16 34 H 0.29 7.07 8.30 -40.82 -0.34 6.73 16 35 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.09 1.69 7.62 -52.49 -0.40 1.29 16 37 H 0.05 0.96 7.15 -51.93 -0.37 0.58 16 38 H 0.08 1.11 7.82 -51.93 -0.41 0.70 16 39 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 324.55 15.07 4.89 4.89 Total: -1.00 -33.96 324.55 -9.95 -43.90 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.98 Total: 4.63 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: -2.32 Total: -35.99 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: -0.31 Total: -30.47 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.64 Total: -16.22 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.17 Total: 17.33 kcal Atomic # 16 Polarization: 13.35 SS G_CDS: -1.42 Total: 11.93 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.96 -9.95 -43.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334248357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.931 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds