Wall clock time and date at job start Tue Mar 31 2020 08:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46935 * 2 1 4 4 C 1.50695 * 109.47024 * 239.99763 * 2 1 3 5 5 O 1.21286 * 120.00412 * 264.95410 * 4 2 1 6 6 N 1.34778 * 120.00049 * 84.95396 * 4 2 1 7 7 C 1.46920 * 120.63249 * 354.96056 * 6 4 2 8 8 C 1.53191 * 108.77627 * 126.36747 * 7 6 4 9 9 C 1.53038 * 109.31328 * 54.64115 * 8 7 6 10 10 C 1.50699 * 109.45104 * 178.62066 * 9 8 7 11 11 H 1.08000 * 119.99601 * 120.05829 * 10 9 8 12 12 C 1.37875 * 119.99986 * 300.05609 * 10 9 8 13 13 N 1.31512 * 119.99931 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00080 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47100 * 60.00119 * 14 12 10 16 16 H 1.48500 * 109.47034 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46999 * 300.00064 * 14 12 10 18 18 C 1.53049 * 109.53402 * 298.63169 * 9 8 7 19 19 C 1.46931 * 120.62832 * 174.94217 * 6 4 2 20 20 C 1.50702 * 109.46909 * 119.99859 * 2 1 3 21 21 C 1.33387 * 125.20120 * 239.99808 * 20 2 1 22 22 C 1.38423 * 114.91979 * 179.97438 * 21 20 2 23 23 C 1.33389 * 114.91908 * 359.97438 * 22 21 20 24 24 S 1.75879 * 109.59743 * 359.76089 * 23 22 21 25 25 H 1.09002 * 109.47237 * 181.05427 * 1 2 3 26 26 H 1.09002 * 109.46794 * 301.05581 * 1 2 3 27 27 H 1.09001 * 109.46600 * 61.05764 * 1 2 3 28 28 H 1.09001 * 109.58966 * 246.15963 * 7 6 4 29 29 H 1.09005 * 109.58693 * 6.57989 * 7 6 4 30 30 H 1.09001 * 109.49518 * 174.58708 * 8 7 6 31 31 H 1.08993 * 109.50003 * 294.68498 * 8 7 6 32 32 H 1.08997 * 109.46134 * 58.65049 * 9 8 7 33 33 H 0.97000 * 120.00483 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.49727 * 301.41348 * 18 9 8 35 35 H 1.09003 * 109.52390 * 181.32711 * 18 9 8 36 36 H 1.08999 * 109.58778 * 353.41063 * 19 6 4 37 37 H 1.08996 * 109.58391 * 113.70342 * 19 6 4 38 38 H 1.07997 * 122.54192 * 0.02562 * 21 20 2 39 39 H 1.08002 * 122.54045 * 180.02562 * 22 21 20 40 40 H 1.08003 * 125.20150 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3216 -1.8870 -1.1758 6 7 2.1602 -0.0384 -2.3916 7 6 1.7112 1.3561 -2.5029 8 6 2.8697 2.2063 -3.0338 9 6 3.3801 1.6040 -4.3448 10 6 4.4976 2.4572 -4.8874 11 1 5.4791 2.0313 -5.0352 12 6 4.2671 3.7812 -5.1951 13 7 3.0720 4.2997 -5.0147 14 14 5.6520 4.8385 -5.8684 15 1 6.1462 4.2551 -7.1414 16 1 5.1495 6.2138 -6.1157 17 1 6.7616 4.8873 -4.8826 18 6 3.8986 0.1869 -4.0893 19 6 2.7516 -0.6863 -3.5703 20 6 2.0324 -0.7104 1.2305 21 6 2.8025 -0.1646 2.1730 22 6 3.1395 -1.0123 3.2140 23 6 2.6426 -2.2464 3.1172 24 16 1.6856 -2.3835 1.6479 25 1 -0.3634 -1.0275 0.0189 26 1 -0.3633 0.5302 0.8804 27 1 -0.3632 0.4973 -0.8994 28 1 0.8689 1.4150 -3.1922 29 1 1.4091 1.7221 -1.5215 30 1 2.5222 3.2240 -3.2120 31 1 3.6765 2.2199 -2.3011 32 1 2.5664 1.5679 -5.0690 33 1 2.9098 5.2313 -5.2308 34 1 4.6958 0.2195 -3.3467 35 1 4.2837 -0.2332 -5.0185 36 1 3.1362 -1.6678 -3.2933 37 1 1.9936 -0.7962 -4.3457 38 1 3.1370 0.8613 2.1277 39 1 3.7573 -0.6981 4.0423 40 1 2.8007 -3.0392 3.8335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335739006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:33 Heat of formation + Delta-G solvation = -12.012047 kcal Electronic energy + Delta-G solvation = -21561.816712 eV Core-core repulsion = 18467.748168 eV Total energy + Delta-G solvation = -3094.068544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99965 -37.79170 -36.77688 -34.03841 -33.38714 -31.13219 -30.08243 -28.54147 -26.37182 -24.78722 -23.53578 -22.57419 -22.02758 -19.90946 -19.29114 -18.48331 -16.99174 -16.81325 -16.16905 -15.42987 -15.23279 -14.85136 -14.56569 -13.74409 -13.64495 -13.27142 -13.04729 -12.76777 -12.74195 -12.59932 -12.37655 -12.21159 -12.02806 -11.65547 -11.63701 -11.37468 -11.25628 -10.94638 -10.69094 -10.54599 -10.40597 -10.13776 -9.70550 -9.43955 -9.20885 -8.96738 -8.57383 -8.40745 -8.24517 -8.02875 -6.06142 -4.12288 1.06106 1.76218 2.17300 2.75828 2.95352 3.27956 3.32724 3.35928 3.46258 4.38540 4.57016 4.74745 5.05452 5.09345 5.17584 5.24328 5.47908 5.58000 5.60295 5.66764 5.70252 5.79849 5.93196 5.99689 6.04290 6.12705 6.16008 6.25620 6.35461 6.42202 6.52921 6.62663 6.85975 7.00264 7.10583 7.23545 7.62767 7.87898 7.88655 8.00253 8.36984 8.50483 8.90820 9.52996 10.99334 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.003774 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.179477 B = 7417.239037 C = 7636.685462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 H 0.112 0.888 4 C 0.515 3.485 5 O -0.546 6.546 6 N -0.597 5.597 7 C 0.100 3.900 8 C -0.125 4.125 9 C 0.049 3.951 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 C -0.123 4.123 19 C 0.113 3.887 20 C -0.156 4.156 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.236 4.236 24 S 0.151 5.849 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.039 0.961 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 -7.766 13.153 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 H 0.130 0.870 4 C 0.301 3.699 5 O -0.425 6.425 6 N -0.328 5.328 7 C -0.022 4.022 8 C -0.163 4.163 9 C 0.031 3.969 10 C -0.551 4.551 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.161 4.161 19 C -0.009 4.009 20 C -0.275 4.275 21 C -0.174 4.174 22 C -0.167 4.167 23 C -0.372 4.372 24 S 0.417 5.583 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.437 -9.391 12.469 16.885 hybrid contribution 1.733 1.962 0.288 2.633 sum -4.705 -7.430 12.758 15.495 Atomic orbital electron populations 1.21811 0.91654 1.03042 1.03282 1.19861 0.97701 1.00014 0.89172 0.87023 1.20278 0.78201 0.87137 0.84240 1.90659 1.51407 1.15691 1.84738 1.48195 1.59911 1.14030 1.10700 1.22135 0.99226 0.80150 1.00733 1.22034 0.94749 1.01452 0.98107 1.18624 0.96138 0.89253 0.92916 1.21171 0.96550 0.95146 1.42250 0.92765 1.24945 0.95510 0.97931 0.95481 1.69816 1.20642 1.13996 1.48658 0.86679 0.82454 0.79425 0.79576 1.20296 1.21287 1.20335 1.22013 0.96248 0.98175 0.99711 1.21702 0.96226 0.96822 0.86172 1.24037 1.05530 0.97799 1.00095 1.20092 1.00871 1.01633 0.94854 1.20043 1.03139 0.93184 1.00363 1.25759 1.07248 1.01443 1.02797 1.84356 1.49210 1.09916 1.14861 0.91927 0.91028 0.91039 0.91720 0.91288 0.87696 0.94229 0.95436 0.92908 0.92988 0.92116 0.90398 0.92201 0.84456 0.84734 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.91 37.16 0.33 -1.27 16 2 C -0.04 -0.62 2.24 -92.92 -0.21 -0.82 16 3 H 0.11 1.45 6.43 -51.93 -0.33 1.12 16 4 C 0.51 8.86 6.79 -10.99 -0.07 8.78 16 5 O -0.55 -10.74 14.50 5.55 0.08 -10.66 16 6 N -0.60 -10.49 2.97 -172.76 -0.51 -11.00 16 7 C 0.10 1.70 5.83 -3.71 -0.02 1.68 16 8 C -0.12 -2.66 5.15 -26.61 -0.14 -2.80 16 9 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 10 C -0.51 -13.50 8.56 -34.44 -0.29 -13.79 16 11 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 12 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 13 N -0.89 -24.01 11.30 55.43 0.63 -23.38 16 14 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.12 -2.50 5.30 -26.60 -0.14 -2.65 16 19 C 0.11 2.05 6.42 -3.70 -0.02 2.03 16 20 C -0.16 -2.19 4.87 -36.00 -0.18 -2.36 16 21 C -0.14 -1.85 10.01 -41.21 -0.41 -2.26 16 22 C -0.14 -1.59 10.18 -41.21 -0.42 -2.01 16 23 C -0.24 -2.74 11.23 29.04 0.33 -2.41 16 24 S 0.15 2.03 21.68 -107.50 -2.33 -0.30 16 25 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.78 7.36 -51.93 -0.38 0.40 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 0.99 5.10 -51.93 -0.26 0.73 16 30 H 0.11 2.49 6.03 -51.93 -0.31 2.18 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.42 7.04 -51.93 -0.37 1.06 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 331.31 15.07 4.99 4.99 Total: -1.00 -28.89 331.31 -9.54 -38.43 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.84 Total: 1.68 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.54 Total: -15.37 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.11 Total: -34.38 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.33 Total: -0.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.89 -9.54 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335739006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.417 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds