Wall clock time and date at job start Tue Mar 31 2020 08:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.46935 * 2 1 4 4 C 1.50695 * 109.47024 * 239.99763 * 2 1 3 5 5 O 1.21286 * 120.00412 * 264.95410 * 4 2 1 6 6 N 1.34778 * 120.00049 * 84.95396 * 4 2 1 7 7 C 1.46920 * 120.63249 * 354.96056 * 6 4 2 8 8 C 1.53191 * 108.77627 * 126.36747 * 7 6 4 9 9 C 1.53038 * 109.31328 * 54.64115 * 8 7 6 10 10 C 1.50699 * 109.45104 * 178.62066 * 9 8 7 11 11 H 1.08000 * 119.99601 * 120.05829 * 10 9 8 12 12 C 1.37875 * 119.99986 * 300.05609 * 10 9 8 13 13 N 1.31512 * 119.99931 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00080 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47100 * 60.00119 * 14 12 10 16 16 H 1.48500 * 109.47034 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46999 * 300.00064 * 14 12 10 18 18 C 1.53049 * 109.53402 * 298.63169 * 9 8 7 19 19 C 1.46931 * 120.62832 * 174.94217 * 6 4 2 20 20 C 1.50702 * 109.46909 * 119.99859 * 2 1 3 21 21 C 1.33387 * 125.20120 * 239.99808 * 20 2 1 22 22 C 1.38423 * 114.91979 * 179.97438 * 21 20 2 23 23 C 1.33389 * 114.91908 * 359.97438 * 22 21 20 24 24 S 1.75879 * 109.59743 * 359.76089 * 23 22 21 25 25 H 1.09002 * 109.47237 * 181.05427 * 1 2 3 26 26 H 1.09002 * 109.46794 * 301.05581 * 1 2 3 27 27 H 1.09001 * 109.46600 * 61.05764 * 1 2 3 28 28 H 1.09001 * 109.58966 * 246.15963 * 7 6 4 29 29 H 1.09005 * 109.58693 * 6.57989 * 7 6 4 30 30 H 1.09001 * 109.49518 * 174.58708 * 8 7 6 31 31 H 1.08993 * 109.50003 * 294.68498 * 8 7 6 32 32 H 1.08997 * 109.46134 * 58.65049 * 9 8 7 33 33 H 0.97000 * 120.00483 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.49727 * 301.41348 * 18 9 8 35 35 H 1.09003 * 109.52390 * 181.32711 * 18 9 8 36 36 H 1.08999 * 109.58778 * 353.41063 * 19 6 4 37 37 H 1.08996 * 109.58391 * 113.70342 * 19 6 4 38 38 H 1.07997 * 122.54192 * 0.02562 * 21 20 2 39 39 H 1.08002 * 122.54045 * 180.02562 * 22 21 20 40 40 H 1.08003 * 125.20150 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3216 -1.8870 -1.1758 6 7 2.1602 -0.0384 -2.3916 7 6 1.7112 1.3561 -2.5029 8 6 2.8697 2.2063 -3.0338 9 6 3.3801 1.6040 -4.3448 10 6 4.4976 2.4572 -4.8874 11 1 5.4791 2.0313 -5.0352 12 6 4.2671 3.7812 -5.1951 13 7 3.0720 4.2997 -5.0147 14 14 5.6520 4.8385 -5.8684 15 1 6.1462 4.2551 -7.1414 16 1 5.1495 6.2138 -6.1157 17 1 6.7616 4.8873 -4.8826 18 6 3.8986 0.1869 -4.0893 19 6 2.7516 -0.6863 -3.5703 20 6 2.0324 -0.7104 1.2305 21 6 2.8025 -0.1646 2.1730 22 6 3.1395 -1.0123 3.2140 23 6 2.6426 -2.2464 3.1172 24 16 1.6856 -2.3835 1.6479 25 1 -0.3634 -1.0275 0.0189 26 1 -0.3633 0.5302 0.8804 27 1 -0.3632 0.4973 -0.8994 28 1 0.8689 1.4150 -3.1922 29 1 1.4091 1.7221 -1.5215 30 1 2.5222 3.2240 -3.2120 31 1 3.6765 2.2199 -2.3011 32 1 2.5664 1.5679 -5.0690 33 1 2.9098 5.2313 -5.2308 34 1 4.6958 0.2195 -3.3467 35 1 4.2837 -0.2332 -5.0185 36 1 3.1362 -1.6678 -3.2933 37 1 1.9936 -0.7962 -4.3457 38 1 3.1370 0.8613 2.1277 39 1 3.7573 -0.6981 4.0423 40 1 2.8007 -3.0392 3.8335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335739006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:32 Heat of formation + Delta-G solvation = -26.303428 kcal Electronic energy + Delta-G solvation = -21562.436433 eV Core-core repulsion = 18467.748168 eV Total energy + Delta-G solvation = -3094.688265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35705 -38.90098 -38.21490 -35.42959 -34.89763 -32.85438 -31.66089 -29.48876 -28.10041 -25.95786 -24.85550 -24.10958 -23.40266 -21.40369 -20.25617 -19.94637 -18.58156 -17.96128 -17.85139 -16.64137 -16.48519 -16.38221 -16.08159 -15.10479 -14.94058 -14.66538 -14.61796 -14.25691 -14.11368 -13.67623 -13.55550 -13.24677 -13.20277 -13.11614 -13.04923 -12.80022 -12.56605 -12.49003 -12.36203 -12.12547 -11.92200 -11.50907 -11.46828 -11.01724 -10.96459 -10.63723 -10.38049 -9.58713 -9.50693 -9.24173 -8.07176 -6.20167 0.10606 0.80527 1.23103 1.43196 1.44118 1.51144 1.58855 1.84602 2.14502 2.44795 3.19411 3.49048 3.60357 4.01652 4.08435 4.24455 4.26942 4.31737 4.35483 4.48976 4.56560 4.66178 4.70356 4.72795 4.80589 4.82728 4.86626 4.98732 5.15122 5.18536 5.23810 5.25808 5.41527 5.44069 5.54690 5.63010 5.65657 5.99594 6.14474 6.40083 6.49724 6.88596 7.14487 7.47444 8.95961 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.003774 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.179477 B = 7417.239037 C = 7636.685462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.039 4.039 3 H 0.122 0.878 4 C 0.512 3.488 5 O -0.573 6.573 6 N -0.601 5.601 7 C 0.111 3.889 8 C -0.116 4.116 9 C 0.046 3.954 10 C -0.537 4.537 11 H 0.045 0.955 12 C 0.021 3.979 13 N -0.910 5.910 14 Si 0.946 3.054 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.276 1.276 18 C -0.113 4.113 19 C 0.118 3.882 20 C -0.179 4.179 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.227 4.227 24 S 0.113 5.887 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.004 0.996 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.151 0.849 39 H 0.161 0.839 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 -7.496 14.664 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 H 0.140 0.860 4 C 0.300 3.700 5 O -0.453 6.453 6 N -0.332 5.332 7 C -0.011 4.011 8 C -0.154 4.154 9 C 0.027 3.973 10 C -0.576 4.576 11 H 0.063 0.937 12 C -0.178 4.178 13 N -0.549 5.549 14 Si 0.773 3.227 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.201 1.201 18 C -0.151 4.151 19 C -0.004 4.004 20 C -0.297 4.297 21 C -0.175 4.175 22 C -0.175 4.175 23 C -0.363 4.363 24 S 0.378 5.622 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.179 0.821 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.546 -9.121 13.986 17.934 hybrid contribution 1.813 1.850 -0.157 2.595 sum -4.732 -7.271 13.829 16.325 Atomic orbital electron populations 1.21825 0.89828 1.03070 1.04644 1.19882 0.99146 0.99822 0.87368 0.86018 1.20913 0.77356 0.86956 0.84751 1.90645 1.52439 1.17025 1.85166 1.48236 1.60049 1.14108 1.10820 1.22018 0.97326 0.79232 1.02489 1.21797 0.95850 1.00892 0.96889 1.18599 0.94702 0.90680 0.93273 1.21513 0.97047 0.96056 1.42940 0.93663 1.25583 0.97520 0.98944 0.95776 1.69922 1.21826 1.14181 1.48967 0.85799 0.80009 0.78040 0.78894 1.20129 1.20726 1.20101 1.21852 0.96674 0.96997 0.99582 1.21566 0.95728 0.96226 0.86896 1.24123 1.06930 0.97928 1.00708 1.20418 0.99885 1.02487 0.94754 1.20366 1.03308 0.92975 1.00818 1.26082 1.05993 1.02242 1.01986 1.84464 1.50470 1.10586 1.16686 0.92652 0.88874 0.90385 0.91174 0.87987 0.90017 0.95321 0.97756 0.92866 0.94153 0.91945 0.90410 0.91203 0.83119 0.82141 0.79816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.91 71.99 0.64 -2.17 16 2 C -0.04 -1.02 2.24 -12.28 -0.03 -1.05 16 3 H 0.12 2.85 6.43 -2.39 -0.02 2.84 16 4 C 0.51 17.04 6.79 87.66 0.60 17.64 16 5 O -0.57 -22.22 14.50 -3.05 -0.04 -22.27 16 6 N -0.60 -20.51 2.97 -818.89 -2.43 -22.94 16 7 C 0.11 3.65 5.83 86.36 0.50 4.15 16 8 C -0.12 -4.93 5.15 30.67 0.16 -4.77 16 9 C 0.05 2.18 2.06 -11.51 -0.02 2.15 16 10 C -0.54 -28.70 8.56 25.60 0.22 -28.48 16 11 H 0.05 2.43 7.74 -2.91 -0.02 2.40 16 12 C 0.02 1.11 5.30 84.65 0.45 1.56 16 13 N -0.91 -49.22 11.30 21.45 0.24 -48.97 16 14 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 15 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 18 C -0.11 -4.62 5.30 30.68 0.16 -4.46 16 19 C 0.12 4.25 6.42 86.36 0.55 4.81 16 20 C -0.18 -4.72 4.87 24.59 0.12 -4.60 16 21 C -0.14 -3.38 10.01 21.22 0.21 -3.17 16 22 C -0.14 -2.97 10.18 21.22 0.22 -2.76 16 23 C -0.23 -4.74 11.23 66.72 0.75 -3.99 16 24 S 0.11 2.92 21.68 -56.49 -1.22 1.70 16 25 H 0.05 1.23 7.95 -2.39 -0.02 1.21 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.50 7.36 -2.39 -0.02 1.48 16 28 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.10 2.68 5.10 -2.38 -0.01 2.67 16 30 H 0.08 3.90 6.03 -2.39 -0.01 3.89 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.08 2.82 7.04 -2.39 -0.02 2.80 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -62.00 331.31 4.12 -57.88 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.03 Total: 15.41 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 4.53 Total: -25.13 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -2.19 Total: -71.92 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.04 Total: -22.27 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.22 Total: 1.70 kcal Total: -62.00 4.12 -57.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335739006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.579 kcal (2) G-P(sol) polarization free energy of solvation -62.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds