Wall clock time and date at job start Tue Mar 31 2020 08:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81394 * 102.99983 * 2 1 4 4 H 1.09001 * 109.47426 * 305.00376 * 3 2 1 5 5 C 1.52996 * 109.47365 * 65.00335 * 3 2 1 6 6 C 1.53003 * 109.47329 * 185.00427 * 3 2 1 7 7 C 1.52992 * 109.47365 * 64.99863 * 6 3 2 8 8 C 1.50696 * 109.47335 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99954 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99901 * 180.02562 * 8 7 6 11 11 C 1.39131 * 119.99596 * 185.72517 * 10 8 7 12 12 C 1.38643 * 120.29102 * 19.23887 * 11 10 8 13 13 C 1.38218 * 120.03790 * 180.25521 * 12 11 10 14 14 C 1.38869 * 120.61130 * 359.74772 * 13 12 11 15 15 C 1.36452 * 120.58138 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.94318 * 0.02562 * 15 14 13 17 17 C 1.41075 * 120.30396 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00290 * 206.47144 * 17 16 15 19 19 C 1.39960 * 119.99628 * 26.47377 * 17 16 15 20 20 N 1.30856 * 120.00076 * 201.35880 * 19 17 16 21 21 Si 1.86801 * 120.00227 * 21.35675 * 19 17 16 22 22 H 1.48501 * 109.47328 * 270.00467 * 21 19 17 23 23 H 1.48502 * 109.46755 * 29.99960 * 21 19 17 24 24 H 1.48496 * 109.47355 * 149.99993 * 21 19 17 25 25 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46936 * 299.99650 * 1 2 3 27 27 H 1.08998 * 109.47419 * 59.99780 * 1 2 3 28 28 H 1.08992 * 109.47949 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47149 * 300.00517 * 5 3 2 30 30 H 1.09005 * 109.47259 * 59.99796 * 5 3 2 31 31 H 1.09008 * 109.46671 * 304.99771 * 6 3 2 32 32 H 1.09004 * 109.47476 * 185.00448 * 6 3 2 33 33 H 1.09000 * 109.47390 * 59.99950 * 7 6 3 34 34 H 1.09004 * 109.47301 * 300.00693 * 7 6 3 35 35 H 0.96996 * 120.00122 * 5.72752 * 10 8 7 36 36 H 1.08002 * 119.97637 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.69243 * 179.76358 * 13 12 11 38 38 H 1.08004 * 119.70407 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.02954 * 180.02562 * 15 14 13 40 40 H 0.97004 * 119.99239 * 354.93959 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7429 2.4015 1.3073 6 6 3.7370 1.9412 -0.1258 7 6 4.1988 1.4192 -1.4878 8 6 5.6910 1.5897 -1.6114 9 8 6.3228 2.0809 -0.7001 10 7 6.3232 1.1974 -2.7352 11 6 7.7121 1.2438 -2.8042 12 6 8.4684 1.3004 -1.6437 13 6 9.8476 1.3517 -1.7185 14 6 10.4899 1.3420 -2.9498 15 6 9.7704 1.2811 -4.1076 16 6 8.3648 1.2280 -4.0592 17 6 7.6134 1.1654 -5.2516 18 1 6.6018 1.5430 -5.2729 19 6 8.1790 0.6139 -6.4069 20 7 7.6894 0.9144 -7.5827 21 14 9.6328 -0.5511 -6.2707 22 1 10.8969 0.2264 -6.3228 23 1 9.5577 -1.2879 -4.9835 24 1 9.5996 -1.5181 -7.3972 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.9876 3.4636 1.3072 29 1 0.6636 2.2777 1.3970 30 1 2.2355 1.9149 2.1492 31 1 4.2339 1.3804 0.6659 32 1 3.9902 2.9976 -0.0366 33 1 3.7018 1.9799 -2.2794 34 1 3.9455 0.3627 -1.5770 35 1 5.8100 0.8827 -3.4957 36 1 7.9794 1.3090 -0.6808 37 1 10.4312 1.3995 -0.8111 38 1 11.5684 1.3821 -2.9911 39 1 10.2790 1.2736 -5.0603 40 1 6.8901 1.4600 -7.6501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344363877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:07 Heat of formation + Delta-G solvation = -34.996073 kcal Electronic energy + Delta-G solvation = -20728.146961 eV Core-core repulsion = 17633.081755 eV Total energy + Delta-G solvation = -3095.065206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.79040 -37.54329 -35.57914 -33.90461 -33.72335 -31.10499 -30.22874 -29.08957 -28.35848 -25.19606 -24.38967 -22.24375 -21.49412 -20.34962 -19.47557 -18.21906 -16.88898 -16.76474 -16.32388 -15.51650 -14.92624 -14.68438 -14.40527 -14.32137 -14.00451 -13.73662 -13.45402 -13.15713 -12.96252 -12.68845 -12.54932 -12.52580 -12.09523 -11.90640 -11.55124 -11.45805 -11.23814 -11.05362 -10.89592 -10.79181 -10.48754 -9.94332 -9.86556 -9.68193 -9.44997 -9.09432 -8.75223 -7.85641 -7.74101 -7.37109 -6.98680 -4.54061 1.48084 2.36892 2.44059 2.72497 3.19421 3.26387 3.40536 3.54715 3.78649 3.98971 4.54056 4.55401 4.59831 4.85546 4.88345 4.98495 5.12602 5.22155 5.34221 5.41264 5.42238 5.51572 5.58117 5.71381 5.84950 6.01251 6.12873 6.17638 6.25078 6.40886 6.69902 6.84070 7.05627 7.35803 7.37501 7.52568 7.69686 7.86008 7.93857 8.24383 8.37722 8.49902 8.70881 8.89314 9.94881 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.003674 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.627953 B = 7619.880676 C = 8509.177250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.257 6.257 3 C -0.056 4.056 4 H 0.087 0.913 5 C -0.147 4.147 6 C -0.082 4.082 7 C -0.142 4.142 8 C 0.496 3.504 9 O -0.541 6.541 10 N -0.637 5.637 11 C 0.024 3.976 12 C -0.093 4.093 13 C -0.231 4.231 14 C -0.088 4.088 15 C -0.235 4.235 16 C 0.086 3.914 17 C -0.525 4.525 18 H 0.074 0.926 19 C 0.047 3.953 20 N -0.813 5.813 21 Si 1.074 2.926 22 H -0.276 1.276 23 H -0.263 1.263 24 H -0.291 1.291 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.406 0.594 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.583 -0.604 10.526 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.031 6.031 3 C -0.185 4.185 4 H 0.106 0.894 5 C -0.206 4.206 6 C -0.120 4.120 7 C -0.182 4.182 8 C 0.284 3.716 9 O -0.420 6.420 10 N -0.278 5.278 11 C -0.070 4.070 12 C -0.113 4.113 13 C -0.250 4.250 14 C -0.107 4.107 15 C -0.255 4.255 16 C 0.081 3.919 17 C -0.553 4.553 18 H 0.092 0.908 19 C -0.173 4.173 20 N -0.435 5.435 21 Si 0.901 3.099 22 H -0.203 1.203 23 H -0.188 1.188 24 H -0.218 1.218 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.242 0.758 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.532 -1.984 10.176 14.779 hybrid contribution -2.371 1.933 0.246 3.069 sum -12.903 -0.050 10.422 16.586 Atomic orbital electron populations 1.23398 0.94970 1.06293 1.04698 1.87065 1.06554 1.11680 1.97841 1.23259 1.00440 0.93446 1.01356 0.89434 1.22069 1.00905 1.01212 0.96411 1.21166 0.90608 1.03074 0.97200 1.21726 0.92920 1.04327 0.99243 1.20582 0.89756 0.78512 0.82726 1.90561 1.67500 1.44152 1.39837 1.43018 1.06412 1.62105 1.16261 1.17772 0.81230 1.13951 0.94036 1.21170 0.93502 0.99088 0.97545 1.20354 0.93886 1.14705 0.96084 1.20384 0.97755 0.99488 0.93096 1.20704 0.93697 1.13777 0.97308 1.17489 0.91992 0.91256 0.91123 1.20363 1.01987 1.37697 0.95289 0.90761 1.27247 1.02563 0.96443 0.91073 1.70575 1.18682 1.28545 1.25733 0.83574 0.74085 0.75660 0.76596 1.20261 1.18773 1.21815 0.88280 0.90651 0.90635 0.91473 0.92685 0.91169 0.90101 0.89660 0.89210 0.88096 0.75800 0.85156 0.88682 0.88828 0.87417 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.45 101.05 1.06 0.14 16 2 S -0.26 -2.71 20.60 -107.50 -2.21 -4.93 16 3 C -0.06 -0.54 2.82 -26.73 -0.08 -0.62 16 4 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 5 C -0.15 -1.20 9.10 37.16 0.34 -0.86 16 6 C -0.08 -0.98 3.97 -26.73 -0.11 -1.09 16 7 C -0.14 -1.90 5.53 -27.89 -0.15 -2.05 16 8 C 0.50 9.17 7.67 -10.99 -0.08 9.08 16 9 O -0.54 -11.53 12.87 5.55 0.07 -11.45 16 10 N -0.64 -12.98 5.18 -9.47 -0.05 -13.03 16 11 C 0.02 0.58 6.54 -83.17 -0.54 0.04 16 12 C -0.09 -2.19 8.78 -39.44 -0.35 -2.54 16 13 C -0.23 -5.17 10.04 -39.36 -0.39 -5.57 16 14 C -0.09 -1.99 9.96 -39.99 -0.40 -2.39 16 15 C -0.24 -5.75 7.33 -39.28 -0.29 -6.04 16 16 C 0.09 2.17 5.18 -106.65 -0.55 1.61 16 17 C -0.52 -13.43 8.75 -37.86 -0.33 -13.76 16 18 H 0.07 1.89 7.20 -52.49 -0.38 1.52 16 19 C 0.05 1.19 5.38 -17.32 -0.09 1.09 16 20 N -0.81 -21.12 13.66 55.55 0.76 -20.37 16 21 Si 1.07 23.96 25.01 -169.99 -4.25 19.71 16 22 H -0.28 -5.90 6.37 56.52 0.36 -5.54 16 23 H -0.26 -5.88 7.10 56.52 0.40 -5.48 16 24 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 25 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.07 0.47 7.14 -51.92 -0.37 0.10 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.38 6.92 -51.93 -0.36 0.02 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.09 8.10 -51.92 -0.42 0.67 16 32 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.30 7.13 -51.93 -0.37 0.93 16 35 H 0.41 7.63 7.33 -40.82 -0.30 7.33 16 36 H 0.13 3.05 5.40 -52.49 -0.28 2.77 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.11 2.58 4.35 -52.49 -0.23 2.36 16 40 H 0.29 7.19 8.73 -40.82 -0.36 6.83 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -28.99 334.76 -8.32 -37.31 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.71 Total: 10.65 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.97 Total: -22.94 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.71 Total: -33.40 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -4.25 Total: 19.71 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.21 Total: -4.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.99 -8.32 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344363877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.318 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds