Wall clock time and date at job start Tue Mar 31 2020 08:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81394 * 102.99983 * 2 1 4 4 H 1.09001 * 109.47426 * 305.00376 * 3 2 1 5 5 C 1.52996 * 109.47365 * 65.00335 * 3 2 1 6 6 C 1.53003 * 109.47329 * 185.00427 * 3 2 1 7 7 C 1.52992 * 109.47365 * 64.99863 * 6 3 2 8 8 C 1.50696 * 109.47335 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99954 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99901 * 180.02562 * 8 7 6 11 11 C 1.39131 * 119.99596 * 185.72517 * 10 8 7 12 12 C 1.38643 * 120.29102 * 19.23887 * 11 10 8 13 13 C 1.38218 * 120.03790 * 180.25521 * 12 11 10 14 14 C 1.38869 * 120.61130 * 359.74772 * 13 12 11 15 15 C 1.36452 * 120.58138 * 359.97438 * 14 13 12 16 16 C 1.40734 * 119.94318 * 0.02562 * 15 14 13 17 17 C 1.41075 * 120.30396 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00290 * 206.47144 * 17 16 15 19 19 C 1.39960 * 119.99628 * 26.47377 * 17 16 15 20 20 N 1.30856 * 120.00076 * 201.35880 * 19 17 16 21 21 Si 1.86801 * 120.00227 * 21.35675 * 19 17 16 22 22 H 1.48501 * 109.47328 * 270.00467 * 21 19 17 23 23 H 1.48502 * 109.46755 * 29.99960 * 21 19 17 24 24 H 1.48496 * 109.47355 * 149.99993 * 21 19 17 25 25 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46936 * 299.99650 * 1 2 3 27 27 H 1.08998 * 109.47419 * 59.99780 * 1 2 3 28 28 H 1.08992 * 109.47949 * 180.02562 * 5 3 2 29 29 H 1.09004 * 109.47149 * 300.00517 * 5 3 2 30 30 H 1.09005 * 109.47259 * 59.99796 * 5 3 2 31 31 H 1.09008 * 109.46671 * 304.99771 * 6 3 2 32 32 H 1.09004 * 109.47476 * 185.00448 * 6 3 2 33 33 H 1.09000 * 109.47390 * 59.99950 * 7 6 3 34 34 H 1.09004 * 109.47301 * 300.00693 * 7 6 3 35 35 H 0.96996 * 120.00122 * 5.72752 * 10 8 7 36 36 H 1.08002 * 119.97637 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.69243 * 179.76358 * 13 12 11 38 38 H 1.08004 * 119.70407 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.02954 * 180.02562 * 15 14 13 40 40 H 0.97004 * 119.99239 * 354.93959 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7429 2.4015 1.3073 6 6 3.7370 1.9412 -0.1258 7 6 4.1988 1.4192 -1.4878 8 6 5.6910 1.5897 -1.6114 9 8 6.3228 2.0809 -0.7001 10 7 6.3232 1.1974 -2.7352 11 6 7.7121 1.2438 -2.8042 12 6 8.4684 1.3004 -1.6437 13 6 9.8476 1.3517 -1.7185 14 6 10.4899 1.3420 -2.9498 15 6 9.7704 1.2811 -4.1076 16 6 8.3648 1.2280 -4.0592 17 6 7.6134 1.1654 -5.2516 18 1 6.6018 1.5430 -5.2729 19 6 8.1790 0.6139 -6.4069 20 7 7.6894 0.9144 -7.5827 21 14 9.6328 -0.5511 -6.2707 22 1 10.8969 0.2264 -6.3228 23 1 9.5577 -1.2879 -4.9835 24 1 9.5996 -1.5181 -7.3972 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.9876 3.4636 1.3072 29 1 0.6636 2.2777 1.3970 30 1 2.2355 1.9149 2.1492 31 1 4.2339 1.3804 0.6659 32 1 3.9902 2.9976 -0.0366 33 1 3.7018 1.9799 -2.2794 34 1 3.9455 0.3627 -1.5770 35 1 5.8100 0.8827 -3.4957 36 1 7.9794 1.3090 -0.6808 37 1 10.4312 1.3995 -0.8111 38 1 11.5684 1.3821 -2.9911 39 1 10.2790 1.2736 -5.0603 40 1 6.8901 1.4600 -7.6501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344363877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:07 Heat of formation + Delta-G solvation = -50.735074 kcal Electronic energy + Delta-G solvation = -20728.829455 eV Core-core repulsion = 17633.081755 eV Total energy + Delta-G solvation = -3095.747701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40140 -39.25578 -36.56177 -35.68473 -35.50243 -32.15971 -32.09747 -30.26474 -29.42242 -26.79659 -25.73669 -23.82694 -22.63239 -21.97327 -21.06122 -20.11724 -18.46471 -17.99497 -17.60182 -16.72439 -16.51901 -16.10217 -15.85036 -15.43453 -15.18921 -15.02490 -14.65907 -14.40462 -14.37712 -14.10771 -13.92306 -13.60775 -13.45119 -13.34616 -12.70892 -12.63503 -12.56288 -12.38112 -12.25453 -12.07745 -11.98209 -11.68663 -11.45776 -11.20767 -10.91983 -10.69030 -10.42816 -9.64080 -9.29275 -8.79375 -8.66013 -6.48475 0.67595 0.76207 0.84845 1.40468 1.54705 1.68031 1.75081 1.83266 2.19066 2.34031 2.65264 3.52442 3.59436 3.69386 3.99056 4.10937 4.31671 4.34204 4.35603 4.37906 4.42995 4.48645 4.61831 4.71418 4.77440 4.79411 4.89116 4.94114 4.99930 5.01486 5.15896 5.24577 5.27266 5.44638 5.57787 5.65375 5.93319 6.02642 6.05580 6.38674 6.61426 6.66947 6.88711 7.29445 8.00581 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.003674 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.627953 B = 7619.880676 C = 8509.177250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.315 6.315 3 C -0.042 4.042 4 H 0.101 0.899 5 C -0.144 4.144 6 C -0.077 4.077 7 C -0.129 4.129 8 C 0.495 3.505 9 O -0.569 6.569 10 N -0.643 5.643 11 C 0.019 3.981 12 C -0.112 4.112 13 C -0.222 4.222 14 C -0.094 4.094 15 C -0.248 4.248 16 C 0.061 3.939 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.020 3.980 20 N -0.836 5.836 21 Si 1.101 2.899 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.282 1.282 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.412 0.588 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.041 -0.578 11.627 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.090 6.090 3 C -0.171 4.171 4 H 0.119 0.881 5 C -0.203 4.203 6 C -0.115 4.115 7 C -0.169 4.169 8 C 0.285 3.715 9 O -0.450 6.450 10 N -0.284 5.284 11 C -0.076 4.076 12 C -0.132 4.132 13 C -0.242 4.242 14 C -0.112 4.112 15 C -0.268 4.268 16 C 0.057 3.943 17 C -0.572 4.572 18 H 0.080 0.920 19 C -0.196 4.196 20 N -0.460 5.460 21 Si 0.923 3.077 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.208 1.208 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.248 0.752 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.127 0.873 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.016 -1.947 11.280 15.887 hybrid contribution -2.266 1.963 0.084 2.999 sum -13.282 0.015 11.364 17.480 Atomic orbital electron populations 1.23434 0.91439 1.07198 1.05830 1.87269 1.10539 1.13163 1.98003 1.23161 0.98438 0.92684 1.02794 0.88065 1.22051 1.01797 1.01342 0.95128 1.21100 0.92459 1.02377 0.95608 1.21735 0.88916 1.05313 1.00913 1.21477 0.91665 0.76928 0.81383 1.90533 1.68699 1.45175 1.40556 1.43149 1.05424 1.62579 1.17275 1.18044 0.82989 1.12731 0.93847 1.21370 0.94380 1.00076 0.97414 1.20780 0.93697 1.12268 0.97408 1.20739 0.99611 0.98597 0.92281 1.20925 0.93589 1.13949 0.98315 1.17704 0.92801 0.92368 0.91419 1.20350 1.01799 1.39013 0.96032 0.92036 1.28082 1.03953 0.96823 0.90719 1.70631 1.19306 1.29927 1.26123 0.83231 0.73025 0.74830 0.76573 1.18613 1.19155 1.20837 0.87522 0.89342 0.89627 0.90709 0.91076 0.92002 0.91904 0.89963 0.86936 0.87316 0.75166 0.85225 0.85794 0.85324 0.87253 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.45 113.37 1.18 -0.16 16 2 S -0.31 -6.22 20.60 -56.49 -1.16 -7.39 16 3 C -0.04 -0.74 2.82 30.59 0.09 -0.65 16 4 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 5 C -0.14 -2.05 9.10 71.98 0.66 -1.39 16 6 C -0.08 -1.77 3.97 30.59 0.12 -1.65 16 7 C -0.13 -3.32 5.53 29.84 0.16 -3.16 16 8 C 0.50 18.20 7.67 87.66 0.67 18.88 16 9 O -0.57 -24.23 12.87 -3.04 -0.04 -24.27 16 10 N -0.64 -26.36 5.18 -302.27 -1.57 -27.92 16 11 C 0.02 0.91 6.54 38.88 0.25 1.16 16 12 C -0.11 -5.20 8.78 22.36 0.20 -5.01 16 13 C -0.22 -9.48 10.04 22.42 0.22 -9.25 16 14 C -0.09 -4.00 9.96 22.00 0.22 -3.78 16 15 C -0.25 -11.86 7.33 22.46 0.16 -11.70 16 16 C 0.06 3.10 5.18 -21.18 -0.11 2.99 16 17 C -0.54 -28.30 8.75 23.38 0.20 -28.10 16 18 H 0.06 3.25 7.20 -2.91 -0.02 3.23 16 19 C 0.02 1.00 5.38 85.26 0.46 1.46 16 20 N -0.84 -44.13 13.66 21.83 0.30 -43.84 16 21 Si 1.10 47.84 25.01 68.60 1.72 49.55 16 22 H -0.26 -10.57 6.37 99.48 0.63 -9.94 16 23 H -0.27 -11.63 7.10 99.48 0.71 -10.92 16 24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 0.85 7.14 -2.39 -0.02 0.84 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.79 6.92 -2.38 -0.02 0.77 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.06 1.68 8.10 -2.38 -0.02 1.67 16 32 H 0.08 1.95 8.10 -2.38 -0.02 1.93 16 33 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.11 2.71 7.13 -2.38 -0.02 2.69 16 35 H 0.41 15.71 7.33 -92.71 -0.68 15.03 16 36 H 0.13 6.02 5.40 -2.91 -0.02 6.01 16 37 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.11 5.11 4.35 -2.91 -0.01 5.10 16 40 H 0.28 14.53 8.73 -92.71 -0.81 13.72 16 Total: -1.00 -62.29 334.76 4.00 -58.29 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.26 Total: 35.91 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 4.50 Total: -40.35 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -1.27 Total: -71.76 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.27 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.72 Total: 49.55 kcal Atomic # 16 Polarization: -6.22 SS G_CDS: -1.16 Total: -7.39 kcal Total: -62.29 4.00 -58.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344363877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.560 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds