Wall clock time and date at job start Tue Mar 31 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47110 * 2 1 4 4 H 1.08996 * 109.47270 * 305.00652 * 3 2 1 5 5 C 1.50698 * 109.47154 * 185.00066 * 3 2 1 6 6 H 1.07999 * 120.00159 * 240.00081 * 5 3 2 7 7 C 1.37872 * 120.00059 * 60.00865 * 5 3 2 8 8 N 1.31515 * 120.00159 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99989 * 180.02562 * 7 5 3 10 10 H 1.48489 * 109.47306 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47298 * 119.99729 * 9 7 5 12 12 H 1.48508 * 109.46746 * 239.99536 * 9 7 5 13 13 N 1.46502 * 109.46584 * 65.00395 * 3 2 1 14 14 C 1.34779 * 120.00008 * 274.99863 * 13 3 2 15 15 O 1.21550 * 119.99948 * 0.02562 * 14 13 3 16 16 C 1.47849 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.39575 * 120.14487 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85263 * 180.30542 * 17 16 14 19 19 C 1.38362 * 120.14149 * 359.43978 * 18 17 16 20 20 C 1.50701 * 119.85431 * 180.30234 * 19 18 17 21 21 S 1.81399 * 109.47248 * 270.26039 * 20 19 18 22 22 C 1.81405 * 102.99716 * 179.97438 * 21 20 19 23 23 C 1.38356 * 120.29585 * 0.56434 * 19 18 17 24 24 C 1.37959 * 120.14427 * 359.71588 * 23 19 18 25 25 H 1.08999 * 109.47102 * 299.99203 * 1 2 3 26 26 H 1.09000 * 109.47546 * 59.99743 * 1 2 3 27 27 H 1.09005 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47300 * 240.00705 * 2 1 3 29 29 H 1.08991 * 109.47702 * 120.00879 * 2 1 3 30 30 H 0.96994 * 120.00739 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00414 * 95.00121 * 13 3 2 32 32 H 1.08002 * 120.07104 * 0.02562 * 17 16 14 33 33 H 1.07998 * 119.92975 * 179.72529 * 18 17 16 34 34 H 1.09007 * 109.46791 * 30.25803 * 20 19 18 35 35 H 1.09004 * 109.47162 * 150.25525 * 20 19 18 36 36 H 1.09000 * 109.46998 * 179.97438 * 22 21 20 37 37 H 1.09004 * 109.47224 * 299.99180 * 22 21 20 38 38 H 1.08992 * 109.47525 * 59.99818 * 22 21 20 39 39 H 1.07996 * 119.93336 * 179.74170 * 23 19 18 40 40 H 1.07997 * 120.07494 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3370 -2.1730 9 14 6.0049 0.8803 -1.3812 10 1 6.5987 1.5452 -0.1937 11 1 6.4962 -0.5188 -1.4629 12 1 6.3999 1.6161 -2.6092 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3414 2.6318 0.4325 16 6 0.0437 3.3246 2.6307 17 6 -1.2164 3.9122 2.7535 18 6 -1.5729 4.5323 3.9332 19 6 -0.6888 4.5624 4.9971 20 6 -1.0876 5.2356 6.2850 21 16 -0.6139 6.9856 6.2245 22 6 -1.1674 7.6140 7.8337 23 6 0.5618 3.9820 4.8819 24 6 0.9330 3.3637 3.7059 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.8292 -0.0614 -2.9497 31 1 2.2719 2.1231 1.9979 32 1 -1.9090 3.8853 1.9253 33 1 -2.5459 4.9912 4.0280 34 1 -2.1666 5.1556 6.4178 35 1 -0.5818 4.7509 7.1201 36 1 -0.9300 8.6750 7.9106 37 1 -2.2444 7.4746 7.9273 38 1 -0.6600 7.0699 8.6303 39 1 1.2488 4.0125 5.7146 40 1 1.9097 2.9113 3.6171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358043717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:06 Heat of formation + Delta-G solvation = -25.057342 kcal Electronic energy + Delta-G solvation = -20614.170649 eV Core-core repulsion = 17519.536418 eV Total energy + Delta-G solvation = -3094.634231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86255 -38.22974 -35.07207 -33.15247 -32.29979 -31.12822 -30.61565 -29.36330 -27.74945 -26.60276 -23.28607 -22.64746 -22.24104 -20.25742 -19.32649 -17.91299 -16.68114 -16.03573 -15.84086 -15.32978 -15.02777 -14.63139 -14.55314 -14.33498 -14.11543 -13.96105 -13.53627 -13.34326 -12.99518 -12.83379 -12.67135 -12.35037 -11.87074 -11.59228 -11.46035 -11.24849 -11.03675 -10.95020 -10.84029 -10.37914 -10.30740 -10.17782 -9.62859 -9.10404 -9.02968 -8.97488 -8.68712 -8.50274 -7.98140 -7.81997 -6.12384 -4.21792 0.65185 1.40033 1.62621 2.27714 3.23909 3.31879 3.34220 3.35868 4.04688 4.19188 4.36096 4.41503 4.52245 4.76171 4.78792 4.92221 4.97884 5.15726 5.19086 5.32575 5.36130 5.40893 5.60409 5.82417 5.99822 6.32000 6.40245 6.41596 6.47182 6.49332 6.67330 6.87266 7.05511 7.20926 7.36742 7.44086 7.62394 7.73563 7.90272 8.17897 8.65101 8.77417 9.10706 9.45536 10.93044 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024370 B = 0.003156 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.685398 B = 8869.407439 C = 9672.538298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.540 3.460 15 O -0.544 6.544 16 C -0.112 4.112 17 C -0.066 4.066 18 C -0.110 4.110 19 C -0.068 4.068 20 C -0.044 4.044 21 S -0.250 6.250 22 C -0.128 4.128 23 C -0.108 4.108 24 C -0.089 4.089 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 8.778 18.863 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.325 3.675 15 O -0.424 6.424 16 C -0.116 4.116 17 C -0.085 4.085 18 C -0.129 4.129 19 C -0.069 4.069 20 C -0.191 4.191 21 S -0.022 6.022 22 C -0.296 4.296 23 C -0.128 4.128 24 C -0.108 4.108 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.234 9.237 17.221 21.206 hybrid contribution 0.726 -0.659 1.299 1.628 sum -7.508 8.578 18.521 21.747 Atomic orbital electron populations 1.21845 0.98332 0.98068 1.01265 1.21936 0.92646 0.99708 1.02325 1.18836 0.94307 0.89232 0.80862 0.93139 1.21258 0.90648 1.38978 1.06327 0.92031 1.24883 0.98625 0.94793 0.95370 1.69900 1.35048 1.37619 1.09350 0.86403 0.84858 0.77758 0.78150 1.19723 1.20875 1.20875 1.46470 1.14350 1.55370 1.18604 1.18171 0.83058 0.79418 0.86849 1.90737 1.51534 1.60115 1.39971 1.20434 0.95431 1.00673 0.95058 1.21274 0.95425 0.94334 0.97438 1.20953 0.99685 0.99740 0.92566 1.19273 0.95025 0.98572 0.94063 1.22328 1.04175 0.93833 0.98761 1.87384 1.81037 1.09659 1.24140 1.23416 1.04097 1.04958 0.97146 1.20910 0.95482 0.98332 0.98043 1.21383 0.99263 0.97764 0.92370 0.94286 0.93108 0.95827 0.88209 0.95017 0.92600 0.77904 0.84468 0.85524 0.89119 0.89099 0.88078 0.90544 0.90537 0.85515 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.78 2.24 -69.08 -0.15 6.63 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.64 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.70 -14.67 4.97 -55.88 -0.28 -14.95 16 14 C 0.54 11.01 6.34 -12.33 -0.08 10.93 16 15 O -0.54 -12.83 13.48 5.32 0.07 -12.75 16 16 C -0.11 -1.82 5.87 -104.97 -0.62 -2.43 16 17 C -0.07 -0.96 9.60 -39.19 -0.38 -1.33 16 18 C -0.11 -1.30 9.68 -39.64 -0.38 -1.68 16 19 C -0.07 -0.75 5.15 -104.53 -0.54 -1.28 16 20 C -0.04 -0.37 6.06 36.01 0.22 -0.15 16 21 S -0.25 -2.41 22.36 -107.50 -2.40 -4.82 16 22 C -0.13 -0.76 10.76 101.05 1.09 0.32 16 23 C -0.11 -1.24 9.68 -39.64 -0.38 -1.62 16 24 C -0.09 -1.20 9.54 -39.18 -0.37 -1.58 16 25 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 26 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 2.68 5.95 -51.92 -0.31 2.37 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 7.06 6.57 -40.82 -0.27 6.79 16 32 H 0.14 2.03 7.65 -52.49 -0.40 1.63 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.09 0.64 8.08 -51.92 -0.42 0.22 16 35 H 0.09 0.64 8.08 -51.92 -0.42 0.22 16 36 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.13 1.60 6.41 -52.49 -0.34 1.26 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -30.44 342.55 -9.42 -39.86 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.75 Total: 6.88 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.82 Total: -10.90 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.35 Total: -38.97 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -2.40 Total: -4.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.44 -9.42 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358043717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.799 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds