Wall clock time and date at job start Tue Mar 31 2020 06:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47110 * 2 1 4 4 H 1.08996 * 109.47270 * 305.00652 * 3 2 1 5 5 C 1.50698 * 109.47154 * 185.00066 * 3 2 1 6 6 H 1.07999 * 120.00159 * 240.00081 * 5 3 2 7 7 C 1.37872 * 120.00059 * 60.00865 * 5 3 2 8 8 N 1.31515 * 120.00159 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99989 * 180.02562 * 7 5 3 10 10 H 1.48489 * 109.47306 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47298 * 119.99729 * 9 7 5 12 12 H 1.48508 * 109.46746 * 239.99536 * 9 7 5 13 13 N 1.46502 * 109.46584 * 65.00395 * 3 2 1 14 14 C 1.34779 * 120.00008 * 274.99863 * 13 3 2 15 15 O 1.21550 * 119.99948 * 0.02562 * 14 13 3 16 16 C 1.47849 * 120.00150 * 179.97438 * 14 13 3 17 17 C 1.39575 * 120.14487 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85263 * 180.30542 * 17 16 14 19 19 C 1.38362 * 120.14149 * 359.43978 * 18 17 16 20 20 C 1.50701 * 119.85431 * 180.30234 * 19 18 17 21 21 S 1.81399 * 109.47248 * 270.26039 * 20 19 18 22 22 C 1.81405 * 102.99716 * 179.97438 * 21 20 19 23 23 C 1.38356 * 120.29585 * 0.56434 * 19 18 17 24 24 C 1.37959 * 120.14427 * 359.71588 * 23 19 18 25 25 H 1.08999 * 109.47102 * 299.99203 * 1 2 3 26 26 H 1.09000 * 109.47546 * 59.99743 * 1 2 3 27 27 H 1.09005 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47300 * 240.00705 * 2 1 3 29 29 H 1.08991 * 109.47702 * 120.00879 * 2 1 3 30 30 H 0.96994 * 120.00739 * 180.02562 * 8 7 5 31 31 H 0.96996 * 120.00414 * 95.00121 * 13 3 2 32 32 H 1.08002 * 120.07104 * 0.02562 * 17 16 14 33 33 H 1.07998 * 119.92975 * 179.72529 * 18 17 16 34 34 H 1.09007 * 109.46791 * 30.25803 * 20 19 18 35 35 H 1.09004 * 109.47162 * 150.25525 * 20 19 18 36 36 H 1.09000 * 109.46998 * 179.97438 * 22 21 20 37 37 H 1.09004 * 109.47224 * 299.99180 * 22 21 20 38 38 H 1.08992 * 109.47525 * 59.99818 * 22 21 20 39 39 H 1.07996 * 119.93336 * 179.74170 * 23 19 18 40 40 H 1.07997 * 120.07494 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3370 -2.1730 9 14 6.0049 0.8803 -1.3812 10 1 6.5987 1.5452 -0.1937 11 1 6.4962 -0.5188 -1.4629 12 1 6.3999 1.6161 -2.6092 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3414 2.6318 0.4325 16 6 0.0437 3.3246 2.6307 17 6 -1.2164 3.9122 2.7535 18 6 -1.5729 4.5323 3.9332 19 6 -0.6888 4.5624 4.9971 20 6 -1.0876 5.2356 6.2850 21 16 -0.6139 6.9856 6.2245 22 6 -1.1674 7.6140 7.8337 23 6 0.5618 3.9820 4.8819 24 6 0.9330 3.3637 3.7059 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 3.8292 -0.0614 -2.9497 31 1 2.2719 2.1231 1.9979 32 1 -1.9090 3.8853 1.9253 33 1 -2.5459 4.9912 4.0280 34 1 -2.1666 5.1556 6.4178 35 1 -0.5818 4.7509 7.1201 36 1 -0.9300 8.6750 7.9106 37 1 -2.2444 7.4746 7.9273 38 1 -0.6600 7.0699 8.6303 39 1 1.2488 4.0125 5.7146 40 1 1.9097 2.9113 3.6171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358043717.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:05 Heat of formation + Delta-G solvation = -42.298961 kcal Electronic energy + Delta-G solvation = -20614.918302 eV Core-core repulsion = 17519.536418 eV Total energy + Delta-G solvation = -3095.381883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21426 -39.57744 -36.94948 -34.54323 -33.91088 -32.69789 -31.85997 -29.87500 -29.22001 -28.02833 -25.12824 -23.71968 -23.54982 -21.85116 -21.06249 -19.45094 -17.94242 -17.42944 -17.27655 -16.55038 -16.33559 -16.21597 -15.88781 -15.55975 -14.98019 -14.74634 -14.61252 -14.52372 -14.38090 -14.09391 -13.71734 -13.53390 -13.43244 -13.19570 -13.04453 -12.87554 -12.71447 -12.46963 -12.15224 -12.06750 -12.01443 -11.60369 -11.05446 -11.01906 -10.78135 -10.53906 -9.96943 -9.82814 -9.55372 -8.67464 -8.16642 -6.34157 -0.34076 0.40716 0.87935 1.44083 1.45316 1.57191 1.67860 2.07202 2.34650 2.60220 2.94919 3.13081 3.56306 3.75456 3.94333 4.01773 4.18557 4.38429 4.39360 4.39795 4.47795 4.55526 4.56056 4.59969 4.74086 4.82188 4.93963 5.03560 5.05656 5.23283 5.28724 5.40774 5.43374 5.46925 5.54693 5.60215 5.77756 5.87490 5.93329 6.15435 6.73241 6.94582 7.31983 7.52297 8.89150 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024370 B = 0.003156 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.685398 B = 8869.407439 C = 9672.538298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.698 5.698 14 C 0.537 3.463 15 O -0.586 6.586 16 C -0.141 4.141 17 C -0.077 4.077 18 C -0.107 4.107 19 C -0.056 4.056 20 C -0.033 4.033 21 S -0.313 6.313 22 C -0.111 4.111 23 C -0.104 4.104 24 C -0.088 4.088 25 H 0.041 0.959 26 H 0.025 0.975 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.157 0.843 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.773 9.525 22.462 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.211 1.211 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.469 6.469 16 C -0.145 4.145 17 C -0.096 4.096 18 C -0.126 4.126 19 C -0.057 4.057 20 C -0.180 4.180 21 S -0.086 6.086 22 C -0.280 4.280 23 C -0.124 4.124 24 C -0.107 4.107 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.142 0.858 33 H 0.169 0.831 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.174 0.826 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.779 9.994 20.865 24.408 hybrid contribution 0.497 -0.784 0.286 0.972 sum -7.282 9.210 21.152 24.192 Atomic orbital electron populations 1.21679 0.97061 0.99188 1.00166 1.21784 0.93697 0.99017 1.01431 1.18430 0.93849 0.89251 0.81109 0.98367 1.21586 0.91240 1.38969 1.06791 0.91030 1.25776 1.03398 0.94330 0.94965 1.70051 1.37044 1.38325 1.09889 0.85311 0.79020 0.77870 0.78221 1.18387 1.20325 1.21078 1.46212 1.15206 1.55552 1.17714 1.18830 0.82095 0.78541 0.87969 1.90704 1.52575 1.61629 1.41946 1.20107 0.97178 1.03210 0.93963 1.21282 0.94779 0.95148 0.98411 1.21180 1.00968 0.98889 0.91593 1.19632 0.94368 0.96928 0.94801 1.22336 1.05603 0.92404 0.97656 1.87622 1.81815 1.11305 1.27820 1.23450 1.04907 1.05143 0.94455 1.21235 0.96152 0.97114 0.97881 1.21505 0.99115 0.97807 0.92275 0.94036 0.95531 0.93410 0.90785 0.93944 0.92555 0.76214 0.85833 0.83136 0.87252 0.86961 0.87500 0.89250 0.89170 0.82579 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.13 16 2 C -0.12 -6.05 5.45 30.59 0.17 -5.89 16 3 C 0.28 14.53 2.24 44.25 0.10 14.63 16 4 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 5 C -0.55 -29.30 8.73 25.60 0.22 -29.07 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.91 -52.71 11.29 21.45 0.24 -52.47 16 9 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 10 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.70 -30.10 4.97 -448.97 -2.23 -32.34 16 14 C 0.54 22.83 6.34 86.79 0.55 23.38 16 15 O -0.59 -29.36 13.48 -3.87 -0.05 -29.41 16 16 C -0.14 -4.61 5.87 -20.09 -0.12 -4.73 16 17 C -0.08 -2.26 9.60 22.53 0.22 -2.04 16 18 C -0.11 -2.33 9.68 22.23 0.22 -2.11 16 19 C -0.06 -1.06 5.15 -19.81 -0.10 -1.16 16 20 C -0.03 -0.43 6.06 71.24 0.43 0.01 16 21 S -0.31 -5.17 22.36 -56.49 -1.26 -6.43 16 22 C -0.11 -0.94 10.76 113.37 1.22 0.28 16 23 C -0.10 -2.08 9.68 22.23 0.22 -1.87 16 24 C -0.09 -2.27 9.54 22.53 0.21 -2.05 16 25 H 0.04 1.88 5.64 -2.39 -0.01 1.87 16 26 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 27 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.07 4.13 5.95 -2.38 -0.01 4.12 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 30 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.40 14.69 6.57 -92.71 -0.61 14.08 16 32 H 0.12 3.86 7.65 -2.91 -0.02 3.84 16 33 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.11 1.05 8.08 -2.39 -0.02 1.03 16 35 H 0.11 1.02 8.08 -2.39 -0.02 1.00 16 36 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 40 H 0.14 3.21 6.41 -2.91 -0.02 3.20 16 Total: -1.00 -69.21 342.55 3.54 -65.66 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.43 Total: 25.13 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 4.39 Total: -14.46 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -1.99 Total: -84.81 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.05 Total: -29.41 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -1.26 Total: -6.43 kcal Total: -69.21 3.54 -65.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358043717.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.365 kcal (2) G-P(sol) polarization free energy of solvation -69.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds