Wall clock time and date at job start Tue Mar 31 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 H 1.09005 * 109.46852 * 305.00654 * 3 2 1 5 5 C 1.50696 * 109.47474 * 185.00453 * 3 2 1 6 6 H 1.08004 * 119.99395 * 240.00534 * 5 3 2 7 7 C 1.37872 * 120.00220 * 59.99769 * 5 3 2 8 8 N 1.31512 * 120.00325 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00034 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47213 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47396 * 120.00025 * 9 7 5 12 12 H 1.48504 * 109.47248 * 240.00152 * 9 7 5 13 13 N 1.46496 * 109.46975 * 65.00174 * 3 2 1 14 14 C 1.34778 * 120.00120 * 275.00194 * 13 3 2 15 15 O 1.21367 * 120.00100 * 0.02562 * 14 13 3 16 16 C 1.49286 * 120.00300 * 179.97438 * 14 13 3 17 17 O 1.21360 * 120.00013 * 354.27716 * 16 14 13 18 18 C 1.47408 * 120.00361 * 174.28412 * 16 14 13 19 19 C 1.39901 * 120.15887 * 3.97393 * 18 16 14 20 20 C 1.38054 * 119.79687 * 179.97438 * 19 18 16 21 21 F 1.35100 * 119.94000 * 180.02562 * 20 19 18 22 22 C 1.38685 * 120.12033 * 0.02562 * 20 19 18 23 23 C 1.38386 * 120.33350 * 359.97438 * 22 20 19 24 24 C 1.37886 * 120.19528 * 359.74503 * 23 22 20 25 25 C 1.50707 * 120.06332 * 180.27846 * 24 23 22 26 26 H 1.09005 * 109.47110 * 299.99828 * 1 2 3 27 27 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47389 * 59.99848 * 1 2 3 29 29 H 1.08997 * 109.47389 * 120.00152 * 2 1 3 30 30 H 1.09005 * 109.47110 * 240.00171 * 2 1 3 31 31 H 0.96989 * 120.00898 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00284 * 94.99808 * 13 3 2 33 33 H 1.08000 * 120.09736 * 359.95831 * 19 18 16 34 34 H 1.08005 * 119.83471 * 180.02562 * 22 20 19 35 35 H 1.07999 * 119.90633 * 179.97438 * 23 22 20 36 36 H 1.08997 * 109.46855 * 263.06912 * 25 24 23 37 37 H 1.09000 * 109.47230 * 23.06900 * 25 24 23 38 38 H 1.08996 * 109.47257 * 143.07349 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1471 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8801 -1.3813 10 1 6.5987 1.5453 -0.1938 11 1 6.4961 -0.5190 -1.4628 12 1 6.3998 1.6158 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3402 2.6318 0.4339 16 6 0.0400 3.3312 2.6429 17 8 0.7714 3.2735 3.6096 18 6 -1.2385 4.0598 2.7285 19 6 -2.1221 4.0589 1.6438 20 6 -3.3177 4.7433 1.7324 21 9 -4.1734 4.7439 0.6868 22 6 -3.6422 5.4303 2.8926 23 6 -2.7720 5.4347 3.9687 24 6 -1.5769 4.7508 3.8969 25 6 -0.6343 4.7524 5.0728 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8291 -0.0603 -2.9503 32 1 2.2720 2.1230 1.9978 33 1 -1.8694 3.5246 0.7399 34 1 -4.5790 5.9638 2.9570 35 1 -3.0314 5.9723 4.8687 36 1 0.1283 5.5172 4.9261 37 1 -1.1917 4.9654 5.9850 38 1 -0.1578 3.7759 5.1579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358053784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:57 Heat of formation + Delta-G solvation = -86.832105 kcal Electronic energy + Delta-G solvation = -23332.784230 eV Core-core repulsion = 19669.258068 eV Total energy + Delta-G solvation = -3663.526161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.86810 -40.67223 -38.82334 -37.96293 -35.35844 -32.55840 -32.44882 -31.53092 -31.02435 -27.59425 -26.98189 -25.20822 -23.54509 -22.71461 -21.52327 -20.07575 -19.54027 -18.04200 -17.31722 -16.49055 -16.04791 -15.81386 -15.70710 -15.39647 -15.28290 -14.89310 -14.39127 -14.04156 -13.98305 -13.63309 -13.36194 -13.16491 -12.77593 -12.31818 -12.09111 -11.98290 -11.80429 -11.62584 -11.57612 -11.35066 -11.01373 -10.92010 -10.71313 -10.34957 -10.28529 -9.71518 -9.26211 -9.15678 -8.79560 -8.64410 -8.59166 -8.06882 -6.20015 -4.29997 0.28137 1.07649 1.74074 3.20445 3.22989 3.26271 3.29655 3.34477 3.73469 4.12960 4.27922 4.46578 4.64755 4.81903 4.85006 5.03116 5.12044 5.16757 5.55300 5.56700 5.61503 5.82990 5.89652 6.02714 6.07805 6.29803 6.34450 6.38929 6.54241 6.72471 6.91551 6.98840 7.14525 7.19638 7.25794 7.51135 7.62080 7.77096 8.06001 8.38942 8.59956 8.83567 9.37112 10.85343 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.004007 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.419644 B = 6985.888099 C = 7681.569366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.265 3.735 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.471 3.529 15 O -0.521 6.521 16 C 0.390 3.610 17 O -0.422 6.422 18 C -0.141 4.141 19 C -0.093 4.093 20 C 0.069 3.931 21 F -0.138 7.138 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.032 4.032 25 C -0.130 4.130 26 H 0.035 0.965 27 H 0.026 0.974 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.103 0.897 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.189 0.811 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 7.919 11.556 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.164 3.836 4 H 0.074 0.926 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.318 5.318 14 C 0.253 3.747 15 O -0.400 6.400 16 C 0.264 3.736 17 O -0.295 6.295 18 C -0.143 4.143 19 C -0.111 4.111 20 C 0.050 3.950 21 F -0.116 7.116 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.033 4.033 25 C -0.186 4.186 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.234 0.766 33 H 0.206 0.794 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.670 7.740 11.169 17.277 hybrid contribution 0.931 0.050 -0.029 0.932 sum -9.739 7.790 11.140 16.723 Atomic orbital electron populations 1.21864 0.98255 0.98469 1.01099 1.21956 0.92679 0.99357 1.02736 1.19027 0.94805 0.89456 0.80292 0.92642 1.21236 0.90344 1.39427 1.06566 0.91791 1.24868 0.98809 0.94590 0.95249 1.69884 1.35198 1.37429 1.09305 0.86368 0.84568 0.77854 0.78198 1.19657 1.20790 1.20816 1.46593 1.13719 1.52382 1.19114 1.20340 0.84281 0.81581 0.88524 1.90486 1.50405 1.59360 1.39797 1.22849 0.85185 0.77283 0.88247 1.90472 1.50819 1.50669 1.37512 1.19844 0.96470 1.02985 0.94997 1.22825 0.90861 0.95932 1.01519 1.17669 0.89914 1.01940 0.85476 1.91515 1.68997 1.95195 1.55905 1.21439 1.00762 0.98927 0.92362 1.20824 0.93570 1.00512 0.98800 1.20306 0.95068 0.93387 0.94529 1.21214 0.98060 1.05448 0.93910 0.94570 0.95478 0.92862 0.94725 0.87868 0.92471 0.76635 0.79439 0.84529 0.84529 0.90448 0.91856 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.15 0.32 -2.63 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.39 2.24 -69.09 -0.15 6.23 16 4 H 0.06 1.52 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.87 11.29 55.43 0.63 -23.25 16 9 Si 0.90 20.19 29.54 -169.99 -5.02 15.16 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.67 -13.62 5.01 -55.42 -0.28 -13.90 16 14 C 0.47 8.95 6.40 -11.66 -0.07 8.88 16 15 O -0.52 -10.73 10.55 5.48 0.06 -10.67 16 16 C 0.39 6.29 7.15 -31.25 -0.22 6.06 16 17 O -0.42 -6.70 13.37 5.49 0.07 -6.63 16 18 C -0.14 -2.04 5.88 -104.92 -0.62 -2.66 16 19 C -0.09 -1.38 9.29 -39.03 -0.36 -1.75 16 20 C 0.07 0.91 7.29 -39.48 -0.29 0.63 16 21 F -0.14 -1.91 17.26 2.25 0.04 -1.87 16 22 C -0.12 -1.21 10.02 -39.36 -0.39 -1.60 16 23 C -0.12 -1.17 9.66 -39.66 -0.38 -1.55 16 24 C -0.03 -0.39 5.92 -104.13 -0.62 -1.00 16 25 C -0.13 -1.36 8.88 36.01 0.32 -1.04 16 26 H 0.04 0.73 5.64 -51.93 -0.29 0.44 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.40 7.50 8.02 -40.82 -0.33 7.17 16 33 H 0.19 3.15 4.82 -52.54 -0.25 2.90 16 34 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.14 0.92 8.05 -52.49 -0.42 0.50 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.50 8.04 -51.93 -0.42 0.09 16 38 H 0.10 1.20 5.61 -51.93 -0.29 0.91 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -27.28 319.16 -7.06 -34.34 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -4.35 Total: 7.97 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -3.02 Total: -5.97 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.35 Total: -37.15 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.13 Total: -17.30 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.28 -7.06 -34.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358053784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.491 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds