Wall clock time and date at job start Tue Mar 31 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 H 1.09005 * 109.46852 * 305.00654 * 3 2 1 5 5 C 1.50696 * 109.47474 * 185.00453 * 3 2 1 6 6 H 1.08004 * 119.99395 * 240.00534 * 5 3 2 7 7 C 1.37872 * 120.00220 * 59.99769 * 5 3 2 8 8 N 1.31512 * 120.00325 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00034 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47213 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47396 * 120.00025 * 9 7 5 12 12 H 1.48504 * 109.47248 * 240.00152 * 9 7 5 13 13 N 1.46496 * 109.46975 * 65.00174 * 3 2 1 14 14 C 1.34778 * 120.00120 * 275.00194 * 13 3 2 15 15 O 1.21367 * 120.00100 * 0.02562 * 14 13 3 16 16 C 1.49286 * 120.00300 * 179.97438 * 14 13 3 17 17 O 1.21360 * 120.00013 * 354.27716 * 16 14 13 18 18 C 1.47408 * 120.00361 * 174.28412 * 16 14 13 19 19 C 1.39901 * 120.15887 * 3.97393 * 18 16 14 20 20 C 1.38054 * 119.79687 * 179.97438 * 19 18 16 21 21 F 1.35100 * 119.94000 * 180.02562 * 20 19 18 22 22 C 1.38685 * 120.12033 * 0.02562 * 20 19 18 23 23 C 1.38386 * 120.33350 * 359.97438 * 22 20 19 24 24 C 1.37886 * 120.19528 * 359.74503 * 23 22 20 25 25 C 1.50707 * 120.06332 * 180.27846 * 24 23 22 26 26 H 1.09005 * 109.47110 * 299.99828 * 1 2 3 27 27 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47389 * 59.99848 * 1 2 3 29 29 H 1.08997 * 109.47389 * 120.00152 * 2 1 3 30 30 H 1.09005 * 109.47110 * 240.00171 * 2 1 3 31 31 H 0.96989 * 120.00898 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00284 * 94.99808 * 13 3 2 33 33 H 1.08000 * 120.09736 * 359.95831 * 19 18 16 34 34 H 1.08005 * 119.83471 * 180.02562 * 22 20 19 35 35 H 1.07999 * 119.90633 * 179.97438 * 23 22 20 36 36 H 1.08997 * 109.46855 * 263.06912 * 25 24 23 37 37 H 1.09000 * 109.47230 * 23.06900 * 25 24 23 38 38 H 1.08996 * 109.47257 * 143.07349 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1471 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8801 -1.3813 10 1 6.5987 1.5453 -0.1938 11 1 6.4961 -0.5190 -1.4628 12 1 6.3998 1.6158 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3402 2.6318 0.4339 16 6 0.0400 3.3312 2.6429 17 8 0.7714 3.2735 3.6096 18 6 -1.2385 4.0598 2.7285 19 6 -2.1221 4.0589 1.6438 20 6 -3.3177 4.7433 1.7324 21 9 -4.1734 4.7439 0.6868 22 6 -3.6422 5.4303 2.8926 23 6 -2.7720 5.4347 3.9687 24 6 -1.5769 4.7508 3.8969 25 6 -0.6343 4.7524 5.0728 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.8291 -0.0603 -2.9503 32 1 2.2720 2.1230 1.9978 33 1 -1.8694 3.5246 0.7399 34 1 -4.5790 5.9638 2.9570 35 1 -3.0314 5.9723 4.8687 36 1 0.1283 5.5172 4.9261 37 1 -1.1917 4.9654 5.9850 38 1 -0.1578 3.7759 5.1579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358053784.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:57 Heat of formation + Delta-G solvation = -102.150125 kcal Electronic energy + Delta-G solvation = -23333.448469 eV Core-core repulsion = 19669.258068 eV Total energy + Delta-G solvation = -3664.190401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.90562 -41.96795 -40.16357 -39.17436 -37.14615 -34.40494 -33.38835 -32.83993 -32.55477 -29.28441 -28.17750 -26.44322 -25.11942 -24.10694 -22.65274 -21.66087 -21.16214 -19.45943 -18.50719 -18.07342 -17.48083 -17.08670 -16.94947 -16.74987 -16.55994 -16.24045 -15.86195 -15.44541 -15.18591 -14.83205 -14.64643 -14.42975 -14.24631 -13.80201 -13.49734 -13.28900 -13.17274 -12.94106 -12.84550 -12.72867 -12.71368 -12.54846 -12.22461 -12.10248 -11.89536 -11.61292 -11.10270 -10.59138 -10.21581 -10.18003 -9.83888 -9.61111 -8.19500 -6.36904 -0.83371 0.11577 0.54746 1.43300 1.45031 1.56320 1.84580 2.00461 2.40869 2.56959 3.09008 3.10987 3.32465 3.58595 3.77033 3.93245 4.01405 4.20409 4.46347 4.52902 4.60451 4.69792 4.73162 4.82047 4.93081 4.99010 5.00991 5.07497 5.19326 5.23364 5.36692 5.39868 5.52252 5.55675 5.66023 5.76218 5.81517 5.96459 6.10819 6.66152 6.71681 7.14526 7.36011 8.85878 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.004007 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.419644 B = 6985.888099 C = 7681.569366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C 0.274 3.726 4 H 0.013 0.987 5 C -0.553 4.553 6 H 0.069 0.931 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.674 5.674 14 C 0.466 3.534 15 O -0.539 6.539 16 C 0.399 3.601 17 O -0.420 6.420 18 C -0.160 4.160 19 C -0.114 4.114 20 C 0.052 3.948 21 F -0.147 7.147 22 C -0.097 4.097 23 C -0.103 4.103 24 C -0.029 4.029 25 C -0.129 4.129 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.267 0.733 32 H 0.407 0.593 33 H 0.160 0.840 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 9.435 14.338 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.171 3.829 4 H 0.031 0.969 5 C -0.591 4.591 6 H 0.087 0.913 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.324 5.324 14 C 0.249 3.751 15 O -0.419 6.419 16 C 0.274 3.726 17 O -0.294 6.294 18 C -0.162 4.162 19 C -0.133 4.133 20 C 0.033 3.967 21 F -0.126 7.126 22 C -0.115 4.115 23 C -0.121 4.121 24 C -0.030 4.030 25 C -0.185 4.185 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.243 0.757 33 H 0.177 0.823 34 H 0.190 0.810 35 H 0.200 0.800 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.415 9.266 13.975 20.284 hybrid contribution 1.054 -0.353 -0.866 1.409 sum -10.360 8.913 13.109 18.938 Atomic orbital electron populations 1.21712 0.96695 0.99597 1.00383 1.21806 0.94000 0.98657 1.01642 1.18619 0.94108 0.89542 0.80619 0.96922 1.21555 0.91211 1.39413 1.06886 0.91287 1.25697 1.03225 0.94178 0.94895 1.70018 1.36993 1.38077 1.09786 0.85338 0.79177 0.77905 0.78177 1.18765 1.20319 1.20830 1.46376 1.14729 1.53069 1.18193 1.21031 0.83390 0.80924 0.89752 1.90508 1.50826 1.59595 1.41015 1.22490 0.86186 0.77339 0.86584 1.90482 1.51133 1.50959 1.36801 1.19692 0.95486 1.04641 0.96370 1.22537 0.92432 0.97340 1.00984 1.17867 0.89414 1.02877 0.86508 1.91489 1.69096 1.95355 1.56644 1.21850 1.01917 0.97027 0.90731 1.21315 0.91811 0.99025 0.99912 1.20600 0.96185 0.92481 0.93691 1.21233 0.98201 1.04468 0.94603 0.94117 0.93314 0.94686 0.94129 0.90403 0.92414 0.75724 0.82349 0.80964 0.80021 0.90139 0.88466 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.51 71.98 0.61 -4.89 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.73 16 3 C 0.27 13.78 2.24 44.24 0.10 13.87 16 4 H 0.01 0.75 7.58 -2.38 -0.02 0.73 16 5 C -0.55 -29.02 8.73 25.60 0.22 -28.80 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -50.90 11.29 21.44 0.24 -50.66 16 9 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.67 -28.43 5.01 -447.60 -2.24 -30.67 16 14 C 0.47 18.46 6.40 87.22 0.56 19.02 16 15 O -0.54 -23.61 10.55 -3.30 -0.03 -23.65 16 16 C 0.40 13.00 7.15 27.66 0.20 13.19 16 17 O -0.42 -13.19 13.37 -3.28 -0.04 -13.23 16 18 C -0.16 -4.55 5.88 -20.06 -0.12 -4.66 16 19 C -0.11 -3.46 9.29 22.63 0.21 -3.25 16 20 C 0.05 1.33 7.29 22.33 0.16 1.49 16 21 F -0.15 -4.06 17.26 44.97 0.78 -3.28 16 22 C -0.10 -1.64 10.02 22.41 0.22 -1.41 16 23 C -0.10 -1.53 9.66 22.22 0.21 -1.31 16 24 C -0.03 -0.61 5.92 -19.54 -0.12 -0.72 16 25 C -0.13 -2.27 8.88 71.24 0.63 -1.63 16 26 H 0.04 1.70 5.64 -2.38 -0.01 1.69 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.03 1.61 7.85 -2.39 -0.02 1.60 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 4.19 5.95 -2.38 -0.01 4.17 16 31 H 0.27 14.09 8.31 -92.72 -0.77 13.31 16 32 H 0.41 15.64 8.02 -92.71 -0.74 14.90 16 33 H 0.16 5.74 4.82 -3.76 -0.02 5.72 16 34 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.18 1.15 8.05 -2.91 -0.02 1.13 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.05 8.04 -2.39 -0.02 1.04 16 38 H 0.08 1.78 5.61 -2.39 -0.01 1.76 16 Total: -1.00 -61.93 319.16 4.60 -57.33 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.36 Total: 23.70 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 3.52 Total: -3.29 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -2.00 Total: -81.33 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.08 Total: -36.88 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -61.93 4.60 -57.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358053784.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.821 kcal (2) G-P(sol) polarization free energy of solvation -61.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds