Wall clock time and date at job start Tue Mar 31 2020 06:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 H 1.08999 * 109.47266 * 304.99947 * 3 2 1 5 5 C 1.50700 * 109.47369 * 184.99624 * 3 2 1 6 6 H 1.07995 * 120.00138 * 239.99789 * 5 3 2 7 7 C 1.37876 * 119.99521 * 59.99962 * 5 3 2 8 8 N 1.31516 * 120.00359 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99627 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47032 * 120.00456 * 9 7 5 12 12 H 1.48502 * 109.46973 * 239.99830 * 9 7 5 13 13 N 1.46502 * 109.46868 * 64.99677 * 3 2 1 14 14 C 1.34774 * 120.00012 * 274.99735 * 13 3 2 15 15 O 1.21283 * 120.00231 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00083 * 180.02562 * 14 13 3 17 17 H 1.09005 * 109.47066 * 40.00278 * 16 14 13 18 18 C 1.53002 * 109.47189 * 280.00660 * 16 14 13 19 19 S 1.81399 * 109.47399 * 160.00463 * 16 14 13 20 20 C 1.76206 * 102.99998 * 187.34014 * 19 16 14 21 21 C 1.38970 * 120.07668 * 83.96959 * 20 19 16 22 22 C 1.38088 * 119.91702 * 179.97438 * 21 20 19 23 23 C 1.38302 * 120.07614 * 0.02764 * 22 21 20 24 24 C 1.38302 * 120.16393 * 0.22813 * 23 22 21 25 25 C 1.38080 * 120.07985 * 359.49018 * 24 23 22 26 26 H 1.09005 * 109.47198 * 300.00494 * 1 2 3 27 27 H 1.08997 * 109.46896 * 59.99973 * 1 2 3 28 28 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47368 * 239.99495 * 2 1 3 30 30 H 1.09002 * 109.46800 * 119.99550 * 2 1 3 31 31 H 0.97001 * 120.00063 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99885 * 95.00439 * 13 3 2 33 33 H 1.09005 * 109.46875 * 301.53840 * 18 16 14 34 34 H 1.08996 * 109.47297 * 61.53660 * 18 16 14 35 35 H 1.08999 * 109.47378 * 181.54753 * 18 16 14 36 36 H 1.08004 * 120.04775 * 0.02562 * 21 20 19 37 37 H 1.07999 * 119.96260 * 179.97438 * 22 21 20 38 38 H 1.08009 * 119.91394 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.95935 * 179.72142 * 24 23 22 40 40 H 1.07994 * 120.04372 * 180.22732 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8812 -1.3816 10 1 6.5988 1.5462 -0.1940 11 1 6.4971 -0.5176 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6320 0.4343 16 6 0.0366 3.3387 2.6544 17 1 0.8863 3.8936 3.0521 18 6 -0.4020 2.2812 3.6694 19 16 -1.3371 4.4806 2.3389 20 6 -1.5158 5.3204 3.8777 21 6 -0.7147 6.4179 4.1692 22 6 -0.8578 7.0739 5.3759 23 6 -1.7966 6.6395 6.2939 24 6 -2.5919 5.5443 6.0093 25 6 -2.4584 4.8870 4.8024 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8293 -0.0611 -2.9498 32 1 2.2719 2.1231 1.9978 33 1 -1.2342 1.7081 3.2604 34 1 0.4317 1.6114 3.8796 35 1 -0.7164 2.7706 4.5912 36 1 0.0183 6.7580 3.4526 37 1 -0.2354 7.9267 5.6033 38 1 -1.9061 7.1543 7.2370 39 1 -3.3208 5.2052 6.7304 40 1 -3.0822 4.0342 4.5793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358056254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:46 Heat of formation + Delta-G solvation = -21.165007 kcal Electronic energy + Delta-G solvation = -20860.522052 eV Core-core repulsion = 17766.056606 eV Total energy + Delta-G solvation = -3094.465446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.12979 -39.09356 -35.11988 -33.21653 -32.16074 -31.19264 -31.10319 -30.63080 -26.99007 -24.48569 -23.03261 -22.86000 -22.71659 -20.35877 -19.36237 -18.10695 -17.05112 -16.27375 -16.00349 -15.37151 -15.17874 -14.95336 -14.63969 -14.21881 -13.94044 -13.65907 -13.34958 -13.09124 -12.81936 -12.66365 -12.42716 -11.95401 -11.73879 -11.42475 -11.36980 -11.33175 -11.22230 -10.95667 -10.84684 -10.31799 -10.20282 -10.18264 -9.63743 -9.19556 -9.10065 -9.03165 -8.88599 -8.51768 -7.87099 -7.59367 -6.13838 -4.23402 0.73707 1.15500 1.74223 2.65349 3.22534 3.30538 3.32464 3.33600 3.54975 4.01610 4.35476 4.65769 4.72889 4.84416 5.01957 5.06613 5.17731 5.21300 5.27187 5.37807 5.50912 5.64120 5.75038 5.76534 6.09043 6.11277 6.17577 6.21744 6.38995 6.45929 6.65592 6.65764 7.03135 7.18761 7.34890 7.41803 7.60106 7.70395 7.88232 8.16320 8.60832 8.74982 9.06824 9.43847 10.91478 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026384 B = 0.003489 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.988733 B = 8023.549055 C = 8598.679219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.522 3.478 15 O -0.529 6.529 16 C -0.104 4.104 17 H 0.101 0.899 18 C -0.137 4.137 19 S -0.082 6.082 20 C -0.128 4.128 21 C -0.074 4.074 22 C -0.130 4.130 23 C -0.100 4.100 24 C -0.132 4.132 25 C -0.070 4.070 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 8.694 16.716 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.305 3.695 15 O -0.407 6.407 16 C -0.236 4.236 17 H 0.119 0.881 18 C -0.196 4.196 19 S 0.151 5.849 20 C -0.240 4.240 21 C -0.095 4.095 22 C -0.150 4.150 23 C -0.119 4.119 24 C -0.151 4.151 25 C -0.090 4.090 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.118 0.882 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.285 8.662 14.814 19.511 hybrid contribution 2.069 -0.094 1.531 2.575 sum -7.216 8.568 16.344 19.815 Atomic orbital electron populations 1.21846 0.98285 0.98089 1.01304 1.21935 0.92654 0.99734 1.02293 1.18831 0.94257 0.89193 0.80741 0.93175 1.21255 0.90644 1.39035 1.06335 0.92044 1.24885 0.98617 0.94796 0.95368 1.69905 1.35040 1.37578 1.09321 0.86404 0.84851 0.77772 0.78131 1.19762 1.20874 1.20855 1.46434 1.14007 1.55878 1.18629 1.19385 0.83264 0.79605 0.87280 1.90711 1.51056 1.59334 1.39593 1.23643 1.00282 0.99652 0.99982 0.88089 1.21955 1.02705 0.97776 0.97206 1.86204 1.44314 1.44246 1.10131 1.22124 1.01176 1.00471 1.00200 1.21708 0.97493 0.93787 0.96487 1.21226 0.99157 1.00471 0.94145 1.21312 0.95169 0.96196 0.99180 1.21224 1.00215 0.96536 0.97152 1.21647 0.96386 0.98712 0.92296 0.94258 0.93101 0.95823 0.88248 0.95050 0.92585 0.77964 0.90828 0.91222 0.91922 0.85123 0.85652 0.85873 0.85661 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.74 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.52 11.29 55.43 0.63 -23.89 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.70 -14.25 5.02 -54.93 -0.28 -14.53 16 14 C 0.52 10.24 5.57 -10.99 -0.06 10.18 16 15 O -0.53 -12.33 13.18 5.56 0.07 -12.26 16 16 C -0.10 -1.57 3.13 -27.88 -0.09 -1.66 16 17 H 0.10 1.36 8.14 -51.92 -0.42 0.94 16 18 C -0.14 -1.75 9.11 37.16 0.34 -1.41 16 19 S -0.08 -1.26 20.33 -107.50 -2.19 -3.45 16 20 C -0.13 -1.58 5.22 -39.04 -0.20 -1.79 16 21 C -0.07 -0.82 9.79 -39.37 -0.39 -1.20 16 22 C -0.13 -1.18 10.04 -39.61 -0.40 -1.58 16 23 C -0.10 -0.83 10.04 -39.53 -0.40 -1.23 16 24 C -0.13 -1.15 10.04 -39.62 -0.40 -1.55 16 25 C -0.07 -0.74 9.21 -39.37 -0.36 -1.10 16 26 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 6.85 8.54 -40.82 -0.35 6.50 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.69 7.13 -51.93 -0.37 0.32 16 36 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -30.13 342.80 -9.84 -39.97 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.89 Total: 6.82 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.33 Total: -13.26 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.35 Total: -38.42 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.19 Total: -3.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.13 -9.84 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358056254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.804 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds