Wall clock time and date at job start Tue Mar 31 2020 06:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47350 * 2 1 4 4 H 1.08999 * 109.47266 * 304.99947 * 3 2 1 5 5 C 1.50700 * 109.47369 * 184.99624 * 3 2 1 6 6 H 1.07995 * 120.00138 * 239.99789 * 5 3 2 7 7 C 1.37876 * 119.99521 * 59.99962 * 5 3 2 8 8 N 1.31516 * 120.00359 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99627 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47032 * 120.00456 * 9 7 5 12 12 H 1.48502 * 109.46973 * 239.99830 * 9 7 5 13 13 N 1.46502 * 109.46868 * 64.99677 * 3 2 1 14 14 C 1.34774 * 120.00012 * 274.99735 * 13 3 2 15 15 O 1.21283 * 120.00231 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00083 * 180.02562 * 14 13 3 17 17 H 1.09005 * 109.47066 * 40.00278 * 16 14 13 18 18 C 1.53002 * 109.47189 * 280.00660 * 16 14 13 19 19 S 1.81399 * 109.47399 * 160.00463 * 16 14 13 20 20 C 1.76206 * 102.99998 * 187.34014 * 19 16 14 21 21 C 1.38970 * 120.07668 * 83.96959 * 20 19 16 22 22 C 1.38088 * 119.91702 * 179.97438 * 21 20 19 23 23 C 1.38302 * 120.07614 * 0.02764 * 22 21 20 24 24 C 1.38302 * 120.16393 * 0.22813 * 23 22 21 25 25 C 1.38080 * 120.07985 * 359.49018 * 24 23 22 26 26 H 1.09005 * 109.47198 * 300.00494 * 1 2 3 27 27 H 1.08997 * 109.46896 * 59.99973 * 1 2 3 28 28 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47368 * 239.99495 * 2 1 3 30 30 H 1.09002 * 109.46800 * 119.99550 * 2 1 3 31 31 H 0.97001 * 120.00063 * 180.02562 * 8 7 5 32 32 H 0.97004 * 119.99885 * 95.00439 * 13 3 2 33 33 H 1.09005 * 109.46875 * 301.53840 * 18 16 14 34 34 H 1.08996 * 109.47297 * 61.53660 * 18 16 14 35 35 H 1.08999 * 109.47378 * 181.54753 * 18 16 14 36 36 H 1.08004 * 120.04775 * 0.02562 * 21 20 19 37 37 H 1.07999 * 119.96260 * 179.97438 * 22 21 20 38 38 H 1.08009 * 119.91394 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.95935 * 179.72142 * 24 23 22 40 40 H 1.07994 * 120.04372 * 180.22732 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8812 -1.3816 10 1 6.5988 1.5462 -0.1940 11 1 6.4971 -0.5176 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6320 0.4343 16 6 0.0366 3.3387 2.6544 17 1 0.8863 3.8936 3.0521 18 6 -0.4020 2.2812 3.6694 19 16 -1.3371 4.4806 2.3389 20 6 -1.5158 5.3204 3.8777 21 6 -0.7147 6.4179 4.1692 22 6 -0.8578 7.0739 5.3759 23 6 -1.7966 6.6395 6.2939 24 6 -2.5919 5.5443 6.0093 25 6 -2.4584 4.8870 4.8024 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8293 -0.0611 -2.9498 32 1 2.2719 2.1231 1.9978 33 1 -1.2342 1.7081 3.2604 34 1 0.4317 1.6114 3.8796 35 1 -0.7164 2.7706 4.5912 36 1 0.0183 6.7580 3.4526 37 1 -0.2354 7.9267 5.6033 38 1 -1.9061 7.1543 7.2370 39 1 -3.3208 5.2052 6.7304 40 1 -3.0822 4.0342 4.5793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358056254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:45 Heat of formation + Delta-G solvation = -38.031858 kcal Electronic energy + Delta-G solvation = -20861.253454 eV Core-core repulsion = 17766.056606 eV Total energy + Delta-G solvation = -3095.196848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79087 -39.82492 -36.99444 -34.67531 -33.96186 -32.48821 -31.90752 -31.77698 -28.93088 -25.85873 -24.79392 -23.70045 -23.46306 -22.08103 -21.14510 -19.30407 -18.47359 -17.73620 -17.35119 -16.86918 -16.44455 -16.13180 -15.94294 -15.67952 -14.93744 -14.88361 -14.59637 -14.39420 -14.35071 -13.75213 -13.61763 -13.38898 -13.25598 -13.15680 -12.91508 -12.87862 -12.70270 -12.18044 -12.14299 -12.08160 -12.02145 -11.58808 -11.17348 -11.05035 -10.71555 -10.52555 -9.90969 -9.76771 -9.67545 -8.78585 -8.16559 -6.34015 -0.12152 0.43423 0.72227 1.43825 1.45235 1.56751 1.58980 1.80554 2.34343 2.58239 2.80183 3.13031 3.80149 3.86207 3.96822 4.04740 4.09559 4.23098 4.48909 4.53460 4.55469 4.56920 4.62091 4.68662 4.76339 4.80052 5.04403 5.08174 5.09278 5.25912 5.42118 5.43271 5.43414 5.52931 5.54760 5.60180 5.78463 5.90248 5.97178 6.16173 6.73719 6.90833 7.31986 7.51340 8.88968 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026384 B = 0.003489 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.988733 B = 8023.549055 C = 8598.679219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.697 5.697 14 C 0.520 3.480 15 O -0.570 6.570 16 C -0.089 4.089 17 H 0.119 0.881 18 C -0.130 4.130 19 S -0.138 6.138 20 C -0.138 4.138 21 C -0.090 4.090 22 C -0.130 4.130 23 C -0.094 4.094 24 C -0.129 4.129 25 C -0.080 4.080 26 H 0.045 0.955 27 H 0.023 0.977 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.265 0.735 32 H 0.404 0.596 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 9.543 20.191 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.347 5.347 14 C 0.304 3.696 15 O -0.450 6.450 16 C -0.220 4.220 17 H 0.137 0.863 18 C -0.189 4.189 19 S 0.096 5.904 20 C -0.249 4.249 21 C -0.110 4.110 22 C -0.150 4.150 23 C -0.112 4.112 24 C -0.148 4.148 25 C -0.101 4.101 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.726 9.519 18.327 22.419 hybrid contribution 1.812 -0.258 0.511 1.900 sum -6.914 9.261 18.838 22.101 Atomic orbital electron populations 1.21683 0.97023 0.99164 1.00251 1.21775 0.93670 0.99033 1.01396 1.18397 0.93696 0.89200 0.81040 0.98471 1.21595 0.91324 1.38901 1.06739 0.90986 1.25769 1.03302 0.94389 0.95015 1.70058 1.36998 1.38355 1.09869 0.85326 0.79143 0.77833 0.78194 1.18398 1.20416 1.21117 1.46173 1.14883 1.55892 1.17716 1.20105 0.82253 0.78755 0.88450 1.90695 1.52138 1.60616 1.41577 1.23475 1.00922 1.00085 0.97479 0.86262 1.21927 1.02674 0.97177 0.97087 1.86379 1.44675 1.45308 1.14075 1.21937 1.03046 1.01143 0.98782 1.21785 0.97703 0.93974 0.97581 1.21525 0.99492 1.00738 0.93211 1.21743 0.93820 0.95586 1.00027 1.21556 1.00474 0.96198 0.96597 1.21754 0.96163 0.99315 0.92854 0.93649 0.95778 0.93530 0.91019 0.93825 0.92601 0.76138 0.91983 0.90037 0.89759 0.85541 0.83325 0.82668 0.82952 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.02 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16 3 C 0.28 14.33 2.24 44.24 0.10 14.43 16 4 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 5 C -0.55 -28.79 8.73 25.60 0.22 -28.56 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.83 5.29 84.65 0.45 1.27 16 8 N -0.91 -52.34 11.29 21.45 0.24 -52.10 16 9 Si 0.97 41.93 29.54 68.60 2.03 43.95 16 10 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.70 -28.59 5.02 -446.09 -2.24 -30.83 16 14 C 0.52 20.76 5.57 87.66 0.49 21.25 16 15 O -0.57 -27.77 13.18 -3.04 -0.04 -27.81 16 16 C -0.09 -2.63 3.13 29.85 0.09 -2.54 16 17 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 18 C -0.13 -3.10 9.11 71.98 0.66 -2.45 16 19 S -0.14 -4.30 20.33 -56.49 -1.15 -5.45 16 20 C -0.14 -3.26 5.22 22.62 0.12 -3.14 16 21 C -0.09 -1.86 9.79 22.41 0.22 -1.64 16 22 C -0.13 -1.95 10.04 22.25 0.22 -1.73 16 23 C -0.09 -1.17 10.04 22.30 0.22 -0.94 16 24 C -0.13 -1.80 10.04 22.25 0.22 -1.58 16 25 C -0.08 -1.56 9.21 22.41 0.21 -1.35 16 26 H 0.04 1.98 5.64 -2.38 -0.01 1.96 16 27 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 3.96 5.95 -2.39 -0.01 3.94 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.40 13.90 8.54 -92.71 -0.79 13.11 16 33 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.67 7.13 -2.39 -0.02 1.65 16 36 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -68.03 342.80 3.08 -64.94 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.24 Total: 25.02 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 4.00 Total: -17.72 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -2.00 Total: -82.93 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.04 Total: -27.81 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: -4.30 SS G_CDS: -1.15 Total: -5.45 kcal Total: -68.03 3.08 -64.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358056254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.913 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds