Wall clock time and date at job start Tue Mar 31 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47335 * 2 1 4 4 H 1.08991 * 109.47139 * 305.00283 * 3 2 1 5 5 C 1.50697 * 109.46925 * 185.00178 * 3 2 1 6 6 H 1.08007 * 120.00219 * 240.00262 * 5 3 2 7 7 C 1.37872 * 120.00452 * 60.00435 * 5 3 2 8 8 N 1.31525 * 119.99628 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00701 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47024 * 59.99730 * 9 7 5 11 11 H 1.48490 * 109.47590 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46627 * 300.00181 * 9 7 5 13 13 N 1.46504 * 109.46741 * 65.00654 * 3 2 1 14 14 C 1.34776 * 119.99735 * 274.99417 * 13 3 2 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.47184 * 180.02562 * 16 14 13 18 18 S 1.81391 * 109.47235 * 180.02562 * 17 16 14 19 19 C 1.76193 * 103.00267 * 180.02562 * 18 17 16 20 20 C 1.38979 * 120.07900 * 359.72299 * 19 18 17 21 21 C 1.38083 * 119.91776 * 179.72201 * 20 19 18 22 22 C 1.38301 * 120.08175 * 0.53533 * 21 20 19 23 23 C 1.38302 * 120.16100 * 359.76472 * 22 21 20 24 24 C 1.38086 * 120.08086 * 359.95844 * 23 22 21 25 25 H 1.09003 * 109.47195 * 59.99439 * 1 2 3 26 26 H 1.08994 * 109.47749 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46646 * 299.99949 * 1 2 3 28 28 H 1.09000 * 109.46918 * 240.00453 * 2 1 3 29 29 H 1.09003 * 109.47195 * 120.00561 * 2 1 3 30 30 H 0.96995 * 119.99910 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00303 * 94.99591 * 13 3 2 32 32 H 1.09001 * 109.46665 * 60.00498 * 16 14 13 33 33 H 1.08993 * 109.47304 * 300.00054 * 16 14 13 34 34 H 1.09001 * 109.46801 * 300.00442 * 17 16 14 35 35 H 1.09001 * 109.46998 * 60.00038 * 17 16 14 36 36 H 1.08002 * 120.03700 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.95813 * 180.27501 * 21 20 19 38 38 H 1.08000 * 119.92054 * 179.74090 * 22 21 20 39 39 H 1.08004 * 119.96184 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.04327 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8811 -1.3820 10 1 6.5975 0.1470 -0.2351 11 1 6.3977 0.2166 -2.6505 12 1 6.4994 2.2814 -1.3822 13 7 1.6526 2.0974 1.2519 14 6 0.4353 2.6644 1.3671 15 8 -0.3394 2.6320 0.4346 16 6 0.0365 3.3375 2.6551 17 6 -1.3828 3.8935 2.5218 18 16 -1.8626 4.7044 4.0718 19 6 -3.4961 5.2713 3.7335 20 6 -4.0708 5.0380 2.4897 21 6 -5.3534 5.4787 2.2301 22 6 -6.0620 6.1612 3.2021 23 6 -5.4910 6.4006 4.4389 24 6 -4.2110 5.9579 4.7076 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8291 -0.0617 -2.9496 31 1 2.2720 2.1229 1.9979 32 1 0.7279 4.1528 2.8681 33 1 0.0674 2.6128 3.4686 34 1 -1.4141 4.6181 1.7081 35 1 -2.0739 3.0780 2.3088 36 1 -3.5166 4.5084 1.7289 37 1 -5.8022 5.2939 1.2654 38 1 -7.0634 6.5084 2.9948 39 1 -6.0471 6.9343 5.1955 40 1 -3.7659 6.1449 5.6737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358073866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:24 Heat of formation + Delta-G solvation = -29.779823 kcal Electronic energy + Delta-G solvation = -20284.276740 eV Core-core repulsion = 17189.437727 eV Total energy + Delta-G solvation = -3094.839013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.15257 -39.06855 -35.23708 -32.90660 -32.34407 -31.26315 -31.12329 -30.73195 -27.16770 -24.78165 -23.03806 -22.85221 -22.38333 -20.19344 -19.36079 -17.89521 -17.32875 -16.40968 -15.85053 -15.62313 -15.30617 -15.14213 -14.64529 -14.39684 -13.98809 -13.68628 -13.59256 -13.17538 -12.81371 -12.72056 -12.28163 -12.07305 -11.64378 -11.55487 -11.30847 -11.24411 -11.21766 -11.01368 -10.83950 -10.35707 -10.30330 -10.19076 -9.92275 -9.66283 -9.19112 -9.10814 -9.04161 -8.52391 -7.87096 -7.53130 -6.14792 -4.24524 1.01542 1.16311 1.36775 2.29700 3.23766 3.29343 3.29948 3.33303 3.51422 4.09422 4.36936 4.65372 4.73418 4.75183 4.90275 4.93147 5.16455 5.18658 5.29801 5.38035 5.53081 5.68524 5.72105 5.77518 5.86835 6.08044 6.16967 6.29252 6.36080 6.42149 6.62623 6.69197 7.00569 7.15910 7.33057 7.41033 7.58678 7.69765 7.86896 8.15307 8.61887 8.74038 9.07847 9.42892 10.90468 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.002746 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.840247 B =10193.400890 C =10572.166487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.706 5.706 14 C 0.506 3.494 15 O -0.550 6.550 16 C -0.129 4.129 17 C -0.083 4.083 18 S -0.126 6.126 19 C -0.078 4.078 20 C -0.132 4.132 21 C -0.100 4.100 22 C -0.130 4.130 23 C -0.105 4.105 24 C -0.104 4.104 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.543 8.949 12.601 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.354 5.354 14 C 0.289 3.711 15 O -0.429 6.429 16 C -0.171 4.171 17 C -0.232 4.232 18 S 0.120 5.880 19 C -0.191 4.191 20 C -0.156 4.156 21 C -0.120 4.120 22 C -0.150 4.150 23 C -0.125 4.125 24 C -0.128 4.128 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.276 8.862 12.708 20.403 hybrid contribution 0.534 -0.168 -0.888 1.050 sum -12.742 8.694 11.819 19.433 Atomic orbital electron populations 1.21836 0.98385 0.98043 1.01151 1.21937 0.92579 0.99825 1.02318 1.18792 0.94204 0.89180 0.80960 0.93298 1.21196 0.90708 1.39164 1.06319 0.92126 1.24889 0.98632 0.94776 0.95374 1.69885 1.35247 1.37487 1.09359 0.86511 0.84819 0.78326 0.77472 1.20148 1.21125 1.20175 1.46489 1.14511 1.55738 1.18631 1.20093 0.82959 0.79448 0.88589 1.90676 1.51457 1.60177 1.40636 1.21406 0.95234 1.01882 0.98582 1.23392 1.00037 1.03320 0.96430 1.85329 1.11081 1.68861 1.22755 1.21786 0.97901 1.02208 0.97212 1.21352 0.96530 1.01747 0.95929 1.21106 0.94066 0.97369 0.99409 1.21180 1.00133 0.99898 0.93824 1.21070 0.94784 0.99486 0.97110 1.20766 0.94652 0.98864 0.98498 0.93180 0.95854 0.94345 0.88277 0.95022 0.92484 0.77842 0.88438 0.88526 0.88530 0.88561 0.85269 0.85651 0.85929 0.85667 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.63 2.24 -69.08 -0.15 6.47 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.87 8.73 -34.44 -0.30 -14.17 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.83 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.71 -13.93 5.02 -54.93 -0.28 -14.21 16 14 C 0.51 9.31 6.40 -10.99 -0.07 9.24 16 15 O -0.55 -11.98 13.12 5.56 0.07 -11.91 16 16 C -0.13 -1.72 5.71 -27.88 -0.16 -1.88 16 17 C -0.08 -1.08 3.62 37.16 0.13 -0.95 16 18 S -0.13 -1.50 21.92 -107.50 -2.36 -3.85 16 19 C -0.08 -0.93 6.11 -39.03 -0.24 -1.17 16 20 C -0.13 -1.55 9.36 -39.36 -0.37 -1.91 16 21 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 22 C -0.13 -1.15 10.04 -39.53 -0.40 -1.55 16 23 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 24 C -0.10 -1.07 9.79 -39.36 -0.39 -1.46 16 25 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 28 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 6.63 8.54 -40.82 -0.35 6.28 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.33 7.70 -51.92 -0.40 0.93 16 35 H 0.10 1.31 7.72 -51.92 -0.40 0.91 16 36 H 0.13 1.54 5.88 -52.49 -0.31 1.23 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -29.45 341.26 -10.26 -39.71 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.78 Total: 7.92 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.66 Total: -14.32 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.35 Total: -38.04 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.07 Total: -11.91 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.36 Total: -3.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.45 -10.26 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358073866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.926 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds