Wall clock time and date at job start Tue Mar 31 2020 06:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47335 * 2 1 4 4 H 1.08991 * 109.47139 * 305.00283 * 3 2 1 5 5 C 1.50697 * 109.46925 * 185.00178 * 3 2 1 6 6 H 1.08007 * 120.00219 * 240.00262 * 5 3 2 7 7 C 1.37872 * 120.00452 * 60.00435 * 5 3 2 8 8 N 1.31525 * 119.99628 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00701 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47024 * 59.99730 * 9 7 5 11 11 H 1.48490 * 109.47590 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46627 * 300.00181 * 9 7 5 13 13 N 1.46504 * 109.46741 * 65.00654 * 3 2 1 14 14 C 1.34776 * 119.99735 * 274.99417 * 13 3 2 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.47184 * 180.02562 * 16 14 13 18 18 S 1.81391 * 109.47235 * 180.02562 * 17 16 14 19 19 C 1.76193 * 103.00267 * 180.02562 * 18 17 16 20 20 C 1.38979 * 120.07900 * 359.72299 * 19 18 17 21 21 C 1.38083 * 119.91776 * 179.72201 * 20 19 18 22 22 C 1.38301 * 120.08175 * 0.53533 * 21 20 19 23 23 C 1.38302 * 120.16100 * 359.76472 * 22 21 20 24 24 C 1.38086 * 120.08086 * 359.95844 * 23 22 21 25 25 H 1.09003 * 109.47195 * 59.99439 * 1 2 3 26 26 H 1.08994 * 109.47749 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46646 * 299.99949 * 1 2 3 28 28 H 1.09000 * 109.46918 * 240.00453 * 2 1 3 29 29 H 1.09003 * 109.47195 * 120.00561 * 2 1 3 30 30 H 0.96995 * 119.99910 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00303 * 94.99591 * 13 3 2 32 32 H 1.09001 * 109.46665 * 60.00498 * 16 14 13 33 33 H 1.08993 * 109.47304 * 300.00054 * 16 14 13 34 34 H 1.09001 * 109.46801 * 300.00442 * 17 16 14 35 35 H 1.09001 * 109.46998 * 60.00038 * 17 16 14 36 36 H 1.08002 * 120.03700 * 0.02562 * 20 19 18 37 37 H 1.07997 * 119.95813 * 180.27501 * 21 20 19 38 38 H 1.08000 * 119.92054 * 179.74090 * 22 21 20 39 39 H 1.08004 * 119.96184 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.04327 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8811 -1.3820 10 1 6.5975 0.1470 -0.2351 11 1 6.3977 0.2166 -2.6505 12 1 6.4994 2.2814 -1.3822 13 7 1.6526 2.0974 1.2519 14 6 0.4353 2.6644 1.3671 15 8 -0.3394 2.6320 0.4346 16 6 0.0365 3.3375 2.6551 17 6 -1.3828 3.8935 2.5218 18 16 -1.8626 4.7044 4.0718 19 6 -3.4961 5.2713 3.7335 20 6 -4.0708 5.0380 2.4897 21 6 -5.3534 5.4787 2.2301 22 6 -6.0620 6.1612 3.2021 23 6 -5.4910 6.4006 4.4389 24 6 -4.2110 5.9579 4.7076 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8291 -0.0617 -2.9496 31 1 2.2720 2.1229 1.9979 32 1 0.7279 4.1528 2.8681 33 1 0.0674 2.6128 3.4686 34 1 -1.4141 4.6181 1.7081 35 1 -2.0739 3.0780 2.3088 36 1 -3.5166 4.5084 1.7289 37 1 -5.8022 5.2939 1.2654 38 1 -7.0634 6.5084 2.9948 39 1 -6.0471 6.9343 5.1955 40 1 -3.7659 6.1449 5.6737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358073866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:24 Heat of formation + Delta-G solvation = -45.693209 kcal Electronic energy + Delta-G solvation = -20284.966796 eV Core-core repulsion = 17189.437727 eV Total energy + Delta-G solvation = -3095.529069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73218 -39.82392 -37.04371 -34.34594 -34.04443 -32.63880 -31.95288 -31.83716 -29.05092 -26.12453 -24.73437 -23.65695 -23.31636 -21.87373 -21.06140 -19.01046 -18.65255 -17.73220 -17.21116 -16.98441 -16.87645 -16.11764 -15.96971 -15.52685 -15.41092 -14.94418 -14.61360 -14.41067 -14.13536 -13.98402 -13.70464 -13.44782 -13.32028 -13.14196 -12.87490 -12.66194 -12.44231 -12.37265 -12.18634 -12.07119 -12.01083 -11.58285 -11.23262 -11.06027 -10.72710 -10.67741 -10.49902 -9.95730 -9.62254 -8.41815 -8.16042 -6.33327 0.23549 0.39857 0.42126 1.34650 1.45059 1.46419 1.54195 1.84729 2.37219 2.72404 2.75602 3.13457 3.63244 3.85425 3.91405 4.00287 4.09493 4.23582 4.48350 4.49119 4.49936 4.57016 4.57524 4.66377 4.76404 4.77943 4.82305 5.05318 5.06762 5.26112 5.30355 5.43681 5.44631 5.55313 5.56479 5.63221 5.80110 5.93189 5.97727 6.17619 6.75144 6.99240 7.34016 7.59186 8.88997 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.002746 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.840247 B =10193.400890 C =10572.166487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.705 5.705 14 C 0.503 3.497 15 O -0.588 6.588 16 C -0.114 4.114 17 C -0.080 4.080 18 S -0.112 6.112 19 C -0.102 4.102 20 C -0.153 4.153 21 C -0.111 4.111 22 C -0.127 4.127 23 C -0.103 4.103 24 C -0.112 4.112 25 H 0.024 0.976 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.405 0.595 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 9.882 14.997 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.354 5.354 14 C 0.288 3.712 15 O -0.469 6.469 16 C -0.155 4.155 17 C -0.229 4.229 18 S 0.133 5.867 19 C -0.215 4.215 20 C -0.177 4.177 21 C -0.130 4.130 22 C -0.148 4.148 23 C -0.122 4.122 24 C -0.136 4.136 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.594 9.811 15.146 22.593 hybrid contribution 0.496 -0.388 -1.626 1.743 sum -13.098 9.423 13.520 21.051 Atomic orbital electron populations 1.21676 0.96971 0.99095 1.00288 1.21784 0.93751 0.99231 1.01268 1.18352 0.93550 0.89164 0.81502 0.98396 1.21570 0.91540 1.38886 1.06663 0.90986 1.25767 1.03237 0.94432 0.95079 1.70045 1.37104 1.38361 1.09885 0.85447 0.79232 0.78432 0.77527 1.18914 1.21311 1.19679 1.46251 1.15605 1.55904 1.17605 1.20932 0.81815 0.78533 0.89898 1.90667 1.52400 1.61308 1.42570 1.21327 0.95641 1.02658 0.95880 1.23232 0.99698 1.02770 0.97199 1.85104 1.11667 1.68853 1.21073 1.21949 0.98056 1.03590 0.97893 1.21386 0.97525 1.02790 0.95950 1.21374 0.93620 0.97450 1.00587 1.21568 1.01165 0.98654 0.93374 1.21475 0.94270 0.98684 0.97788 1.21041 0.95326 0.98566 0.98664 0.95644 0.93723 0.93543 0.91157 0.94020 0.92640 0.75986 0.86195 0.85956 0.89935 0.89715 0.86624 0.84362 0.83102 0.82602 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.74 16 3 C 0.28 13.97 2.24 44.24 0.10 14.07 16 4 H 0.00 -0.11 7.58 -2.39 -0.02 -0.13 16 5 C -0.55 -28.57 8.73 25.60 0.22 -28.35 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.01 0.80 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.18 11.29 21.45 0.24 -51.93 16 9 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 N -0.70 -27.69 5.02 -446.10 -2.24 -29.93 16 14 C 0.50 18.49 6.40 87.66 0.56 19.05 16 15 O -0.59 -26.48 13.12 -3.04 -0.04 -26.52 16 16 C -0.11 -2.87 5.71 29.85 0.17 -2.70 16 17 C -0.08 -2.08 3.62 71.98 0.26 -1.82 16 18 S -0.11 -2.55 21.92 -56.49 -1.24 -3.79 16 19 C -0.10 -2.36 6.11 22.63 0.14 -2.22 16 20 C -0.15 -3.61 9.36 22.41 0.21 -3.40 16 21 C -0.11 -2.13 10.04 22.25 0.22 -1.90 16 22 C -0.13 -1.95 10.04 22.30 0.22 -1.72 16 23 C -0.10 -1.54 10.04 22.25 0.22 -1.31 16 24 C -0.11 -2.12 9.79 22.41 0.22 -1.90 16 25 H 0.02 1.21 7.85 -2.39 -0.02 1.20 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.96 5.64 -2.38 -0.01 1.94 16 28 H 0.07 3.86 5.95 -2.39 -0.01 3.84 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.41 13.26 8.54 -92.71 -0.79 12.47 16 32 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.12 2.52 8.14 -2.39 -0.02 2.51 16 34 H 0.08 2.35 7.70 -2.39 -0.02 2.33 16 35 H 0.08 2.37 7.72 -2.39 -0.02 2.35 16 36 H 0.12 2.94 5.88 -2.91 -0.02 2.92 16 37 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -65.64 341.26 2.78 -62.86 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.25 Total: 27.11 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.78 Total: -21.55 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -2.00 Total: -81.87 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.04 Total: -26.52 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -1.24 Total: -3.79 kcal Total: -65.64 2.78 -62.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358073866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.165 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds