Wall clock time and date at job start Tue Mar 31 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47370 * 2 1 4 4 H 1.09004 * 109.47244 * 304.90158 * 3 2 1 5 5 C 1.50695 * 109.47522 * 184.90145 * 3 2 1 6 6 H 1.08005 * 120.00036 * 245.44992 * 5 3 2 7 7 C 1.37881 * 120.00081 * 65.45608 * 5 3 2 8 8 N 1.31515 * 119.99952 * 9.46379 * 7 5 3 9 9 Si 1.86801 * 119.99788 * 189.47105 * 7 5 3 10 10 H 1.48501 * 109.47276 * 84.99234 * 9 7 5 11 11 H 1.48499 * 109.46955 * 204.98851 * 9 7 5 12 12 H 1.48495 * 109.47173 * 324.99154 * 9 7 5 13 13 N 1.46500 * 109.47007 * 64.89798 * 3 2 1 14 14 C 1.34780 * 120.00354 * 275.00165 * 13 3 2 15 15 O 1.21540 * 119.99514 * 0.02562 * 14 13 3 16 16 C 1.47922 * 119.99997 * 179.97438 * 14 13 3 17 17 C 1.39650 * 119.99544 * 359.97438 * 16 14 13 18 18 C 1.37667 * 120.05788 * 180.02562 * 17 16 14 19 19 C 1.39871 * 120.05000 * 0.02562 * 18 17 16 20 20 C 1.47408 * 120.00794 * 179.97438 * 19 18 17 21 21 C 1.50698 * 120.00266 * 180.02562 * 20 19 18 22 22 O 1.21224 * 119.99970 * 359.97438 * 20 19 18 23 23 C 1.39679 * 119.98691 * 359.74640 * 19 18 17 24 24 C 1.38153 * 119.93574 * 0.50546 * 23 19 18 25 25 F 1.35102 * 120.01787 * 179.76936 * 24 23 19 26 26 H 1.09001 * 109.47026 * 299.99784 * 1 2 3 27 27 H 1.09001 * 109.47250 * 60.00041 * 1 2 3 28 28 H 1.09001 * 109.47096 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47026 * 240.00216 * 2 1 3 30 30 H 1.09001 * 109.47250 * 119.99959 * 2 1 3 31 31 H 0.96999 * 119.99859 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00159 * 95.00418 * 13 3 2 33 33 H 1.08003 * 119.96657 * 0.05083 * 17 16 14 34 34 H 1.08002 * 119.97002 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47432 * 89.99794 * 21 20 19 36 36 H 1.08994 * 109.47333 * 210.00108 * 21 20 19 37 37 H 1.08999 * 109.47041 * 329.99705 * 21 20 19 38 38 H 1.07999 * 120.03020 * 180.25374 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8091 0.6939 7 6 4.1412 0.9802 -1.2733 8 7 3.4097 0.7115 -2.3327 9 14 5.9919 0.7329 -1.3290 10 1 6.3291 -0.6066 -0.7836 11 1 6.4619 0.8276 -2.7344 12 1 6.6562 1.7810 -0.5132 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3419 2.6321 0.4278 16 6 0.0393 3.3268 2.6268 17 6 0.9291 3.3633 3.7025 18 6 0.5640 3.9782 4.8788 19 6 -0.6991 4.5669 4.9987 20 6 -1.0893 5.2246 6.2589 21 6 -2.4505 5.8583 6.3881 22 8 -0.3157 5.2548 7.1917 23 6 -1.5889 4.5357 3.9224 24 6 -1.2239 3.9139 2.7440 25 9 -2.0849 3.8787 1.7035 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8311 0.3847 -3.1429 32 1 2.2686 2.1243 1.9978 33 1 1.9048 2.9091 3.6112 34 1 1.2534 4.0060 5.7097 35 1 -3.1599 5.1218 6.7653 36 1 -2.3960 6.6982 7.0807 37 1 -2.7801 6.2134 5.4117 38 1 -2.5628 4.9936 4.0128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358075766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:13 Heat of formation + Delta-G solvation = -98.748472 kcal Electronic energy + Delta-G solvation = -23058.939937 eV Core-core repulsion = 19394.897043 eV Total energy + Delta-G solvation = -3664.042894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.79281 -40.33283 -39.30759 -37.77303 -35.12650 -32.95368 -32.16755 -31.06626 -30.68421 -29.64429 -27.07084 -24.97465 -23.22169 -22.55310 -21.10549 -20.24191 -19.45034 -18.24662 -17.22285 -16.73225 -16.13566 -15.77638 -15.66414 -15.27662 -15.20212 -14.87546 -14.73618 -14.45867 -14.30842 -13.59564 -13.11602 -12.76899 -12.75429 -12.62819 -12.40489 -12.37112 -11.95641 -11.75180 -11.50749 -11.39630 -11.05819 -10.82717 -10.40749 -10.26572 -10.16085 -9.76024 -9.36081 -9.20249 -9.16698 -8.93410 -8.53115 -7.95333 -6.19280 -4.25347 0.06299 0.94439 1.87500 3.08973 3.22499 3.29552 3.30478 3.55524 3.79706 3.85861 4.09081 4.32032 4.33752 4.67067 4.74464 4.89457 5.00440 5.02739 5.12484 5.14007 5.34413 5.56365 5.66533 5.79704 5.88673 6.02023 6.30429 6.34458 6.50606 6.54854 6.93943 7.10709 7.11474 7.23860 7.31362 7.53223 7.64203 7.76515 8.00520 8.52047 8.71151 8.96859 9.40387 10.88877 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.003757 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.500490 B = 7450.024160 C = 8276.259032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.059 0.941 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.696 5.696 14 C 0.535 3.465 15 O -0.525 6.525 16 C -0.126 4.126 17 C -0.073 4.073 18 C -0.081 4.081 19 C -0.134 4.134 20 C 0.399 3.601 21 C -0.202 4.202 22 O -0.452 6.452 23 C -0.122 4.122 24 C 0.142 3.858 25 F -0.110 7.110 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.025 0.975 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.266 0.734 32 H 0.388 0.612 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.116 7.048 15.026 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.077 0.923 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.514 5.514 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.344 5.344 14 C 0.320 3.680 15 O -0.403 6.403 16 C -0.131 4.131 17 C -0.092 4.092 18 C -0.099 4.099 19 C -0.135 4.135 20 C 0.276 3.724 21 C -0.259 4.259 22 O -0.327 6.327 23 C -0.141 4.141 24 C 0.121 3.879 25 F -0.088 7.088 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.260 6.948 14.550 18.594 hybrid contribution 1.116 -0.233 -0.039 1.141 sum -8.144 6.716 14.510 17.944 Atomic orbital electron populations 1.21852 0.97974 0.98316 1.01519 1.21861 0.93004 0.99685 1.01338 1.18879 0.94546 0.88979 0.80884 0.92324 1.21144 0.90363 1.44399 1.01939 0.92023 1.24883 0.98547 0.95045 0.94925 1.69981 1.35832 1.43474 1.02157 0.86517 0.84856 0.78747 0.77325 1.20377 1.21142 1.19875 1.46462 1.14000 1.55194 1.18785 1.17955 0.83607 0.80117 0.86370 1.90822 1.51236 1.59152 1.39132 1.20832 0.94101 1.01086 0.97063 1.21322 0.99406 0.97102 0.91342 1.21377 0.95371 0.95215 0.97969 1.20417 0.95447 1.02138 0.95506 1.22524 0.88851 0.75657 0.85340 1.22259 0.95754 1.02920 1.04975 1.90547 1.52969 1.49664 1.39552 1.21386 1.01005 1.00410 0.91313 1.17557 0.87482 0.97841 0.84989 1.91625 1.67715 1.93882 1.55608 0.94168 0.92843 0.95626 0.90048 0.94598 0.92462 0.77870 0.83671 0.83819 0.88133 0.89143 0.89266 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.12 -2.81 5.50 -26.73 -0.15 -2.95 16 3 C 0.27 6.56 2.11 -69.09 -0.15 6.41 16 4 H 0.06 1.68 7.52 -51.93 -0.39 1.29 16 5 C -0.54 -13.87 8.66 -34.44 -0.30 -14.17 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.76 16 8 N -0.88 -24.41 12.16 55.43 0.67 -23.74 16 9 Si 0.90 20.21 29.55 -169.99 -5.02 15.19 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -13.93 4.97 -55.86 -0.28 -14.21 16 14 C 0.54 10.56 6.34 -12.29 -0.08 10.48 16 15 O -0.53 -12.24 12.45 5.33 0.07 -12.17 16 16 C -0.13 -1.94 5.88 -104.82 -0.62 -2.56 16 17 C -0.07 -0.88 9.52 -39.26 -0.37 -1.26 16 18 C -0.08 -0.87 9.58 -39.18 -0.38 -1.25 16 19 C -0.13 -1.36 5.87 -105.02 -0.62 -1.98 16 20 C 0.40 3.70 7.23 -30.58 -0.22 3.48 16 21 C -0.20 -1.11 9.75 36.00 0.35 -0.75 16 22 O -0.45 -5.59 17.08 5.61 0.10 -5.49 16 23 C -0.12 -1.25 9.34 -39.07 -0.36 -1.62 16 24 C 0.14 2.02 7.27 -39.03 -0.28 1.73 16 25 F -0.11 -1.83 15.52 2.25 0.03 -1.80 16 26 H 0.04 0.86 5.65 -51.93 -0.29 0.56 16 27 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 2.10 6.80 -51.93 -0.35 1.74 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 6.56 6.54 -40.82 -0.27 6.29 16 33 H 0.15 1.51 6.38 -52.48 -0.34 1.18 16 34 H 0.14 1.37 7.63 -52.49 -0.40 0.97 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.35 6.45 -51.93 -0.33 0.02 16 38 H 0.15 1.04 6.33 -52.49 -0.33 0.70 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -31.55 323.54 -6.84 -38.39 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.35 Total: 4.34 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.95 Total: -5.39 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.40 Total: -37.95 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.16 Total: -17.66 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.03 Total: -1.80 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.55 -6.84 -38.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358075766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.359 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds