Wall clock time and date at job start Tue Mar 31 2020 06:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47370 * 2 1 4 4 H 1.09004 * 109.47244 * 304.90158 * 3 2 1 5 5 C 1.50695 * 109.47522 * 184.90145 * 3 2 1 6 6 H 1.08005 * 120.00036 * 245.44992 * 5 3 2 7 7 C 1.37881 * 120.00081 * 65.45608 * 5 3 2 8 8 N 1.31515 * 119.99952 * 9.46379 * 7 5 3 9 9 Si 1.86801 * 119.99788 * 189.47105 * 7 5 3 10 10 H 1.48501 * 109.47276 * 84.99234 * 9 7 5 11 11 H 1.48499 * 109.46955 * 204.98851 * 9 7 5 12 12 H 1.48495 * 109.47173 * 324.99154 * 9 7 5 13 13 N 1.46500 * 109.47007 * 64.89798 * 3 2 1 14 14 C 1.34780 * 120.00354 * 275.00165 * 13 3 2 15 15 O 1.21540 * 119.99514 * 0.02562 * 14 13 3 16 16 C 1.47922 * 119.99997 * 179.97438 * 14 13 3 17 17 C 1.39650 * 119.99544 * 359.97438 * 16 14 13 18 18 C 1.37667 * 120.05788 * 180.02562 * 17 16 14 19 19 C 1.39871 * 120.05000 * 0.02562 * 18 17 16 20 20 C 1.47408 * 120.00794 * 179.97438 * 19 18 17 21 21 C 1.50698 * 120.00266 * 180.02562 * 20 19 18 22 22 O 1.21224 * 119.99970 * 359.97438 * 20 19 18 23 23 C 1.39679 * 119.98691 * 359.74640 * 19 18 17 24 24 C 1.38153 * 119.93574 * 0.50546 * 23 19 18 25 25 F 1.35102 * 120.01787 * 179.76936 * 24 23 19 26 26 H 1.09001 * 109.47026 * 299.99784 * 1 2 3 27 27 H 1.09001 * 109.47250 * 60.00041 * 1 2 3 28 28 H 1.09001 * 109.47096 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47026 * 240.00216 * 2 1 3 30 30 H 1.09001 * 109.47250 * 119.99959 * 2 1 3 31 31 H 0.96999 * 119.99859 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00159 * 95.00418 * 13 3 2 33 33 H 1.08003 * 119.96657 * 0.05083 * 17 16 14 34 34 H 1.08002 * 119.97002 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47432 * 89.99794 * 21 20 19 36 36 H 1.08994 * 109.47333 * 210.00108 * 21 20 19 37 37 H 1.08999 * 109.47041 * 329.99705 * 21 20 19 38 38 H 1.07999 * 120.03020 * 180.25374 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8091 0.6939 7 6 4.1412 0.9802 -1.2733 8 7 3.4097 0.7115 -2.3327 9 14 5.9919 0.7329 -1.3290 10 1 6.3291 -0.6066 -0.7836 11 1 6.4619 0.8276 -2.7344 12 1 6.6562 1.7810 -0.5132 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6652 1.3636 15 8 -0.3419 2.6321 0.4278 16 6 0.0393 3.3268 2.6268 17 6 0.9291 3.3633 3.7025 18 6 0.5640 3.9782 4.8788 19 6 -0.6991 4.5669 4.9987 20 6 -1.0893 5.2246 6.2589 21 6 -2.4505 5.8583 6.3881 22 8 -0.3157 5.2548 7.1917 23 6 -1.5889 4.5357 3.9224 24 6 -1.2239 3.9139 2.7440 25 9 -2.0849 3.8787 1.7035 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8311 0.3847 -3.1429 32 1 2.2686 2.1243 1.9978 33 1 1.9048 2.9091 3.6112 34 1 1.2534 4.0060 5.7097 35 1 -3.1599 5.1218 6.7653 36 1 -2.3960 6.6982 7.0807 37 1 -2.7801 6.2134 5.4117 38 1 -2.5628 4.9936 4.0128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358075766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:13 Heat of formation + Delta-G solvation = -118.673787 kcal Electronic energy + Delta-G solvation = -23059.803963 eV Core-core repulsion = 19394.897043 eV Total energy + Delta-G solvation = -3664.906920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.95174 -41.36459 -40.59870 -38.86335 -36.95354 -34.48900 -33.65470 -32.56556 -31.68905 -30.43916 -28.91864 -26.10732 -24.95538 -23.65750 -22.50022 -21.53335 -20.93409 -19.64296 -18.39894 -17.86765 -17.61635 -17.10354 -16.91045 -16.66615 -16.26423 -16.12411 -15.94052 -15.65000 -15.60413 -14.88985 -14.61961 -14.29894 -14.03287 -13.63653 -13.51559 -13.31646 -13.24520 -13.03039 -12.95203 -12.91905 -12.62809 -12.60791 -12.22125 -12.10980 -11.65943 -11.12700 -10.99153 -10.77189 -10.54581 -10.35582 -9.96502 -9.69855 -8.20563 -6.34022 -0.90427 0.01231 0.99839 1.45111 1.46111 1.55472 1.95931 2.26397 2.48518 2.62061 2.80536 3.11494 3.13616 3.47903 3.69876 3.87240 3.99878 4.16907 4.36907 4.43780 4.50012 4.58807 4.65579 4.69586 4.75371 4.87720 4.93419 5.02440 5.03964 5.20711 5.26631 5.37917 5.46067 5.54721 5.58401 5.71705 5.86009 6.03472 6.40641 6.73245 6.84990 7.29381 7.45194 8.88221 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.003757 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.500490 B = 7450.024160 C = 8276.259032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.276 3.724 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.693 5.693 14 C 0.533 3.467 15 O -0.570 6.570 16 C -0.152 4.152 17 C -0.065 4.065 18 C -0.078 4.078 19 C -0.127 4.127 20 C 0.404 3.596 21 C -0.199 4.199 22 O -0.485 6.485 23 C -0.098 4.098 24 C 0.120 3.880 25 F -0.131 7.131 26 H 0.042 0.958 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.404 0.596 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 7.830 18.019 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.173 3.827 4 H 0.022 0.978 5 C -0.589 4.589 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.342 5.342 14 C 0.320 3.680 15 O -0.451 6.451 16 C -0.156 4.156 17 C -0.084 4.084 18 C -0.096 4.096 19 C -0.128 4.128 20 C 0.284 3.716 21 C -0.255 4.255 22 O -0.362 6.362 23 C -0.116 4.116 24 C 0.099 3.901 25 F -0.109 7.109 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.139 0.861 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.241 7.744 17.588 21.324 hybrid contribution 1.051 -0.399 -0.880 1.428 sum -8.190 7.345 16.708 20.004 Atomic orbital electron populations 1.21688 0.96836 0.99432 1.00305 1.21712 0.93924 0.98886 1.00625 1.18449 0.93977 0.89110 0.81130 0.97752 1.21522 0.91080 1.44000 1.02316 0.90708 1.25773 1.03215 0.94726 0.94521 1.70135 1.37852 1.44575 1.02795 0.85422 0.79137 0.79090 0.77092 1.19511 1.21530 1.18709 1.46178 1.14859 1.55293 1.17917 1.18581 0.82660 0.79252 0.87513 1.90792 1.52360 1.60736 1.41239 1.20506 0.95838 1.03372 0.95862 1.21407 0.99328 0.96866 0.90759 1.21606 0.96055 0.94328 0.97621 1.20755 0.95020 1.00966 0.96061 1.22977 0.89992 0.74674 0.83959 1.22333 0.93299 1.03346 1.06563 1.90555 1.54318 1.50975 1.40348 1.21649 1.02347 0.98453 0.89200 1.17916 0.87064 0.99228 0.85860 1.91572 1.68264 1.94215 1.56887 0.93896 0.95526 0.93154 0.92769 0.93007 0.92584 0.75965 0.82320 0.82268 0.86123 0.88430 0.87239 0.79458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.11 -5.41 5.50 30.59 0.17 -5.24 16 3 C 0.28 14.02 2.11 44.24 0.09 14.12 16 4 H 0.00 0.28 7.52 -2.39 -0.02 0.26 16 5 C -0.55 -28.64 8.66 25.60 0.22 -28.42 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.98 5.16 84.66 0.44 1.42 16 8 N -0.92 -52.72 12.16 21.45 0.26 -52.46 16 9 Si 0.97 41.52 29.55 68.60 2.03 43.55 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 13 N -0.69 -28.30 4.97 -448.91 -2.23 -30.53 16 14 C 0.53 21.68 6.34 86.81 0.55 22.23 16 15 O -0.57 -28.01 12.45 -3.84 -0.05 -28.06 16 16 C -0.15 -4.60 5.88 -20.00 -0.12 -4.72 16 17 C -0.07 -1.47 9.52 22.48 0.21 -1.26 16 18 C -0.08 -1.48 9.58 22.53 0.22 -1.26 16 19 C -0.13 -2.18 5.87 -20.12 -0.12 -2.29 16 20 C 0.40 6.07 7.23 28.10 0.20 6.27 16 21 C -0.20 -1.28 9.75 71.24 0.69 -0.59 16 22 O -0.48 -10.66 17.08 -2.86 -0.05 -10.70 16 23 C -0.10 -1.72 9.34 22.60 0.21 -1.51 16 24 C 0.12 3.30 7.27 22.63 0.16 3.46 16 25 F -0.13 -4.41 15.52 44.97 0.70 -3.71 16 26 H 0.04 1.87 5.65 -2.39 -0.01 1.86 16 27 H 0.03 1.29 7.84 -2.39 -0.02 1.28 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 2.90 6.80 -2.39 -0.02 2.88 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.40 13.52 6.54 -92.71 -0.61 12.92 16 33 H 0.16 3.03 6.38 -2.91 -0.02 3.01 16 34 H 0.16 2.57 7.63 -2.91 -0.02 2.55 16 35 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.11 0.29 6.45 -2.39 -0.02 0.27 16 38 H 0.19 1.75 6.33 -2.91 -0.02 1.73 16 Total: -1.00 -72.50 323.54 4.71 -67.79 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.50 Total: 16.93 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 3.55 Total: -2.80 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -1.97 Total: -82.99 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.10 Total: -38.77 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.70 Total: -3.71 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -72.50 4.71 -67.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358075766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.886 kcal (2) G-P(sol) polarization free energy of solvation -72.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds