Wall clock time and date at job start Tue Mar 31 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46866 * 2 1 4 4 N 1.46507 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.35167 * 119.99672 * 263.43223 * 4 3 2 6 6 H 1.08005 * 119.99959 * 194.15959 * 5 4 3 7 7 C 1.39987 * 120.00545 * 14.16195 * 5 4 3 8 8 N 1.30781 * 119.99443 * 13.44830 * 7 5 4 9 9 Si 1.86794 * 120.00462 * 193.44807 * 7 5 4 10 10 H 1.48500 * 109.46842 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47155 * 120.00190 * 9 7 5 12 12 H 1.48498 * 109.47191 * 240.00246 * 9 7 5 13 13 C 1.34773 * 120.00149 * 83.43062 * 4 3 2 14 14 O 1.21566 * 120.00187 * 185.31520 * 13 4 3 15 15 C 1.48390 * 119.99940 * 5.31652 * 13 4 3 16 16 O 1.21531 * 120.00138 * 274.12396 * 15 13 4 17 17 C 1.47477 * 120.00148 * 94.12228 * 15 13 4 18 18 C 1.39853 * 120.15536 * 354.47373 * 17 15 13 19 19 C 1.38074 * 119.80031 * 180.02562 * 18 17 15 20 20 F 1.35096 * 119.94265 * 179.97438 * 19 18 17 21 21 C 1.38677 * 120.11650 * 359.97438 * 19 18 17 22 22 C 1.38378 * 120.32238 * 0.29024 * 21 19 18 23 23 C 1.37895 * 120.19400 * 359.45108 * 22 21 19 24 24 C 1.50693 * 120.06182 * 180.24966 * 23 22 21 25 25 H 1.08993 * 109.46912 * 300.00184 * 1 2 3 26 26 H 1.09001 * 109.46831 * 59.99775 * 1 2 3 27 27 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47296 * 240.00196 * 2 1 3 29 29 H 1.09001 * 109.47336 * 119.99648 * 2 1 3 30 30 H 1.09000 * 109.47290 * 60.00463 * 3 2 1 31 31 H 1.09001 * 109.47579 * 299.99766 * 3 2 1 32 32 H 0.97000 * 119.99583 * 179.97438 * 8 7 5 33 33 H 1.08004 * 120.10083 * 0.03895 * 18 17 15 34 34 H 1.08001 * 119.83877 * 180.02562 * 21 19 18 35 35 H 1.07995 * 119.89983 * 179.73146 * 22 21 19 36 36 H 1.09004 * 109.47580 * 262.44503 * 24 23 22 37 37 H 1.08999 * 109.46943 * 22.44287 * 24 23 22 38 38 H 1.09000 * 109.47551 * 142.44434 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1813 1.5763 1.1621 6 1 5.2367 1.8053 1.1496 7 6 3.5138 1.4180 2.3823 8 7 2.3182 0.8889 2.4097 9 14 4.3308 1.9626 3.9714 10 1 5.6721 2.5248 3.6710 11 1 3.4946 2.9993 4.6280 12 1 4.4756 0.7959 4.8786 13 6 4.1784 1.3093 -1.1604 14 8 5.3902 1.2122 -1.1520 15 6 3.4408 1.2810 -2.4476 16 8 2.9891 0.2333 -2.8663 17 6 3.2556 2.5243 -3.2189 18 6 3.6714 3.7493 -2.6874 19 6 3.4940 4.9089 -3.4156 20 9 3.8942 6.0938 -2.9048 21 6 2.9059 4.8594 -4.6705 22 6 2.4876 3.6507 -5.1989 23 6 2.6632 2.4840 -4.4852 24 6 2.2118 1.1687 -5.0658 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.8558 0.7788 3.2553 33 1 4.1301 3.7881 -1.7104 34 1 2.7697 5.7691 -5.2364 35 1 2.0265 3.6206 -6.1749 36 1 1.2308 0.9124 -4.6657 37 1 2.1510 1.2523 -6.1509 38 1 2.9269 0.3899 -4.8009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358873532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:04 Heat of formation + Delta-G solvation = -75.882395 kcal Electronic energy + Delta-G solvation = -24113.829819 eV Core-core repulsion = 20450.778473 eV Total energy + Delta-G solvation = -3663.051346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.80252 -40.28458 -38.54260 -37.35043 -35.46996 -32.45139 -32.28076 -31.65833 -31.40235 -27.25982 -26.20689 -25.30815 -24.13010 -22.62309 -21.27121 -20.69442 -19.08306 -17.49587 -17.12905 -16.72254 -16.06784 -15.63177 -15.52872 -15.09109 -14.87551 -14.50275 -13.92830 -13.86435 -13.72874 -13.59118 -13.26608 -13.11325 -12.78393 -12.23491 -12.02986 -11.86571 -11.78507 -11.65874 -11.48257 -11.40484 -11.09494 -10.91987 -10.48686 -10.42129 -10.32447 -10.08427 -9.76669 -9.12608 -8.99420 -8.53851 -8.27552 -7.93656 -6.46478 -3.97033 0.61550 1.17471 2.47545 3.01661 3.17979 3.24124 3.52109 3.64148 3.87199 4.15161 4.31706 4.63002 4.86641 4.89805 4.94618 5.09246 5.19817 5.49430 5.65026 5.78303 5.81922 5.91814 5.96985 6.00835 6.01520 6.10547 6.21299 6.24194 6.35110 6.54600 6.70124 6.79826 6.82592 6.88970 7.24331 7.38776 7.61346 7.73847 7.85626 8.33936 8.95659 9.19002 9.72969 10.47051 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.005959 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.125210 B = 4697.998264 C = 5561.837174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.119 3.881 4 N -0.403 5.403 5 C -0.312 4.312 6 H 0.108 0.892 7 C 0.034 3.966 8 N -0.856 5.856 9 Si 0.930 3.070 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.393 3.607 14 O -0.575 6.575 15 C 0.407 3.593 16 O -0.427 6.427 17 C -0.132 4.132 18 C -0.087 4.087 19 C 0.078 3.922 20 F -0.138 7.138 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.036 4.036 24 C -0.121 4.121 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.026 0.974 32 H 0.271 0.729 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 5.440 -10.123 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C -0.004 4.004 4 N -0.119 5.119 5 C -0.440 4.440 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.494 5.494 9 Si 0.756 3.244 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.180 3.820 14 O -0.462 6.462 15 C 0.281 3.719 16 O -0.300 6.300 17 C -0.134 4.134 18 C -0.106 4.106 19 C 0.059 3.941 20 F -0.116 7.116 21 C -0.141 4.141 22 C -0.130 4.130 23 C -0.036 4.036 24 C -0.177 4.177 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.187 4.828 -10.144 12.374 hybrid contribution 0.288 0.566 0.922 1.120 sum -4.899 5.395 -9.221 11.753 Atomic orbital electron populations 1.21566 0.97185 1.00099 1.00404 1.21947 0.94208 0.97589 1.02796 1.21722 0.79906 0.97840 1.00900 1.43354 1.05896 1.57479 1.05192 1.19744 0.96493 1.45832 0.81966 0.87453 1.25481 0.96160 0.95803 0.99720 1.69804 1.13262 1.39149 1.27200 0.85795 0.79598 0.78477 0.80544 1.18997 1.20423 1.20550 1.19650 0.88649 0.88797 0.84908 1.90678 1.12732 1.56784 1.85970 1.22564 0.74796 0.87215 0.87354 1.90513 1.37994 1.33100 1.68363 1.20281 1.02768 0.94463 0.95907 1.21552 0.97606 0.90529 1.00953 1.17496 1.01738 0.81127 0.93763 1.91509 1.88770 1.44266 1.87095 1.21335 0.98867 0.99614 0.94256 1.20852 1.00906 0.90789 1.00458 1.20290 0.94358 0.96537 0.92459 1.21086 1.03120 0.94101 0.99438 0.92728 0.94590 0.93983 0.94105 0.88145 0.86722 0.95619 0.91742 0.83339 0.84441 0.84491 0.90252 0.92052 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.91 37.16 0.37 -2.02 16 2 C -0.13 -2.74 5.64 -26.73 -0.15 -2.89 16 3 C 0.12 2.67 4.36 -4.04 -0.02 2.65 16 4 N -0.40 -10.11 2.59 -115.87 -0.30 -10.41 16 5 C -0.31 -8.26 9.39 -15.43 -0.14 -8.40 16 6 H 0.11 2.99 7.31 -52.48 -0.38 2.60 16 7 C 0.03 0.82 5.12 -17.34 -0.09 0.74 16 8 N -0.86 -20.58 8.05 55.55 0.45 -20.13 16 9 Si 0.93 19.49 29.58 -169.99 -5.03 14.46 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.39 9.85 5.94 -12.08 -0.07 9.78 16 14 O -0.57 -16.25 16.74 5.31 0.09 -16.16 16 15 C 0.41 8.65 4.96 -31.64 -0.16 8.49 16 16 O -0.43 -9.08 12.74 5.34 0.07 -9.01 16 17 C -0.13 -2.35 5.87 -104.92 -0.62 -2.97 16 18 C -0.09 -1.51 9.44 -39.04 -0.37 -1.88 16 19 C 0.08 1.16 7.29 -39.48 -0.29 0.87 16 20 F -0.14 -2.08 17.26 2.25 0.04 -2.05 16 21 C -0.12 -1.45 10.02 -39.37 -0.39 -1.84 16 22 C -0.11 -1.29 9.65 -39.66 -0.38 -1.68 16 23 C -0.04 -0.52 5.92 -104.15 -0.62 -1.14 16 24 C -0.12 -1.58 8.69 36.00 0.31 -1.27 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.91 6.63 -51.93 -0.34 0.57 16 29 H 0.10 2.43 6.25 -51.93 -0.32 2.10 16 30 H 0.12 2.68 5.82 -51.93 -0.30 2.38 16 31 H 0.03 0.53 7.04 -51.93 -0.37 0.16 16 32 H 0.27 6.15 8.29 -40.82 -0.34 5.81 16 33 H 0.15 2.82 7.16 -52.48 -0.38 2.44 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.12 8.05 -52.49 -0.42 0.69 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.09 1.42 5.93 -51.93 -0.31 1.11 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -28.70 321.62 -6.95 -35.65 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.49 Total: 4.36 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.62 Total: -1.55 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.15 Total: -30.55 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.16 Total: -25.17 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.70 -6.95 -35.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358873532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.237 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds