Wall clock time and date at job start Tue Mar 31 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46866 * 2 1 4 4 N 1.46507 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.35167 * 119.99672 * 263.43223 * 4 3 2 6 6 H 1.08005 * 119.99959 * 194.15959 * 5 4 3 7 7 C 1.39987 * 120.00545 * 14.16195 * 5 4 3 8 8 N 1.30781 * 119.99443 * 13.44830 * 7 5 4 9 9 Si 1.86794 * 120.00462 * 193.44807 * 7 5 4 10 10 H 1.48500 * 109.46842 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47155 * 120.00190 * 9 7 5 12 12 H 1.48498 * 109.47191 * 240.00246 * 9 7 5 13 13 C 1.34773 * 120.00149 * 83.43062 * 4 3 2 14 14 O 1.21566 * 120.00187 * 185.31520 * 13 4 3 15 15 C 1.48390 * 119.99940 * 5.31652 * 13 4 3 16 16 O 1.21531 * 120.00138 * 274.12396 * 15 13 4 17 17 C 1.47477 * 120.00148 * 94.12228 * 15 13 4 18 18 C 1.39853 * 120.15536 * 354.47373 * 17 15 13 19 19 C 1.38074 * 119.80031 * 180.02562 * 18 17 15 20 20 F 1.35096 * 119.94265 * 179.97438 * 19 18 17 21 21 C 1.38677 * 120.11650 * 359.97438 * 19 18 17 22 22 C 1.38378 * 120.32238 * 0.29024 * 21 19 18 23 23 C 1.37895 * 120.19400 * 359.45108 * 22 21 19 24 24 C 1.50693 * 120.06182 * 180.24966 * 23 22 21 25 25 H 1.08993 * 109.46912 * 300.00184 * 1 2 3 26 26 H 1.09001 * 109.46831 * 59.99775 * 1 2 3 27 27 H 1.08995 * 109.46988 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47296 * 240.00196 * 2 1 3 29 29 H 1.09001 * 109.47336 * 119.99648 * 2 1 3 30 30 H 1.09000 * 109.47290 * 60.00463 * 3 2 1 31 31 H 1.09001 * 109.47579 * 299.99766 * 3 2 1 32 32 H 0.97000 * 119.99583 * 179.97438 * 8 7 5 33 33 H 1.08004 * 120.10083 * 0.03895 * 18 17 15 34 34 H 1.08001 * 119.83877 * 180.02562 * 21 19 18 35 35 H 1.07995 * 119.89983 * 179.73146 * 22 21 19 36 36 H 1.09004 * 109.47580 * 262.44503 * 24 23 22 37 37 H 1.08999 * 109.46943 * 22.44287 * 24 23 22 38 38 H 1.09000 * 109.47551 * 142.44434 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1813 1.5763 1.1621 6 1 5.2367 1.8053 1.1496 7 6 3.5138 1.4180 2.3823 8 7 2.3182 0.8889 2.4097 9 14 4.3308 1.9626 3.9714 10 1 5.6721 2.5248 3.6710 11 1 3.4946 2.9993 4.6280 12 1 4.4756 0.7959 4.8786 13 6 4.1784 1.3093 -1.1604 14 8 5.3902 1.2122 -1.1520 15 6 3.4408 1.2810 -2.4476 16 8 2.9891 0.2333 -2.8663 17 6 3.2556 2.5243 -3.2189 18 6 3.6714 3.7493 -2.6874 19 6 3.4940 4.9089 -3.4156 20 9 3.8942 6.0938 -2.9048 21 6 2.9059 4.8594 -4.6705 22 6 2.4876 3.6507 -5.1989 23 6 2.6632 2.4840 -4.4852 24 6 2.2118 1.1687 -5.0658 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.8558 0.7788 3.2553 33 1 4.1301 3.7881 -1.7104 34 1 2.7697 5.7691 -5.2364 35 1 2.0265 3.6206 -6.1749 36 1 1.2308 0.9124 -4.6657 37 1 2.1510 1.2523 -6.1509 38 1 2.9269 0.3899 -4.8009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358873532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:04 Heat of formation + Delta-G solvation = -91.436705 kcal Electronic energy + Delta-G solvation = -24114.504305 eV Core-core repulsion = 20450.778473 eV Total energy + Delta-G solvation = -3663.725832 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.97155 -41.85208 -40.07619 -38.93242 -37.43820 -34.25400 -33.50379 -33.37007 -32.70329 -28.72093 -27.77177 -26.92281 -25.63054 -24.07307 -22.62187 -22.29421 -20.71556 -19.16285 -18.89334 -18.24365 -17.61481 -16.80982 -16.75019 -16.71124 -16.37058 -16.19519 -15.56128 -15.41603 -15.24981 -15.05184 -14.75879 -14.45247 -14.11194 -13.90958 -13.66135 -13.28598 -13.20315 -12.87742 -12.78567 -12.75590 -12.60321 -12.56009 -12.33043 -12.14018 -12.09179 -11.81059 -11.52757 -10.90787 -10.25343 -10.12092 -9.88187 -9.66435 -8.39851 -6.00991 -0.66515 0.04605 1.02896 1.25610 1.41665 1.54130 1.68823 2.14528 2.46124 2.49348 2.96423 3.07272 3.34691 3.55043 3.76859 3.85226 4.01876 4.16069 4.23085 4.43079 4.52985 4.57683 4.68851 4.76092 4.80834 4.88990 4.89851 5.03550 5.04186 5.12507 5.21829 5.27163 5.33872 5.44749 5.53423 5.74191 5.77734 5.86696 6.11531 6.37664 6.97342 7.21895 7.76954 8.51968 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.005959 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.125210 B = 4697.998264 C = 5561.837174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.125 3.875 4 N -0.406 5.406 5 C -0.358 4.358 6 H 0.078 0.922 7 C 0.010 3.990 8 N -0.854 5.854 9 Si 0.994 3.006 10 H -0.277 1.277 11 H -0.260 1.260 12 H -0.272 1.272 13 C 0.372 3.628 14 O -0.627 6.627 15 C 0.412 3.588 16 O -0.437 6.437 17 C -0.159 4.159 18 C -0.110 4.110 19 C 0.068 3.932 20 F -0.143 7.143 21 C -0.095 4.095 22 C -0.091 4.091 23 C -0.032 4.032 24 C -0.120 4.120 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.282 0.718 33 H 0.113 0.887 34 H 0.183 0.817 35 H 0.190 0.810 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 6.841 -12.132 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 C 0.002 3.998 4 N -0.121 5.121 5 C -0.486 4.486 6 H 0.096 0.904 7 C -0.196 4.196 8 N -0.490 5.490 9 Si 0.816 3.184 10 H -0.202 1.202 11 H -0.185 1.185 12 H -0.197 1.197 13 C 0.161 3.839 14 O -0.518 6.518 15 C 0.287 3.713 16 O -0.311 6.311 17 C -0.161 4.161 18 C -0.130 4.130 19 C 0.049 3.951 20 F -0.122 7.122 21 C -0.113 4.113 22 C -0.108 4.108 23 C -0.032 4.032 24 C -0.176 4.176 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.200 0.800 35 H 0.208 0.792 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.849 6.225 -12.146 15.744 hybrid contribution 1.064 0.151 1.542 1.879 sum -6.785 6.376 -10.604 14.112 Atomic orbital electron populations 1.21479 0.93755 1.01593 1.01391 1.21814 0.97119 0.96222 1.00630 1.21752 0.78403 0.98584 1.01019 1.43569 1.07000 1.56490 1.05074 1.19664 0.95980 1.49279 0.83676 0.90384 1.26197 0.96765 0.94847 1.01751 1.69865 1.13394 1.37239 1.28553 0.84879 0.78339 0.78482 0.76651 1.20186 1.18489 1.19726 1.20492 0.88566 0.88327 0.86558 1.90601 1.14923 1.59132 1.87102 1.22256 0.74302 0.88867 0.85912 1.90500 1.38787 1.33720 1.68083 1.19970 1.06171 0.92319 0.97600 1.21345 0.99211 0.92062 1.00374 1.17666 1.02540 0.79987 0.94930 1.91495 1.88985 1.44234 1.87456 1.21843 0.95526 1.01650 0.92294 1.21395 0.98897 0.88901 1.01633 1.20587 0.93121 0.98659 0.90879 1.21104 1.02151 0.92381 1.01993 0.92484 0.92782 0.92269 0.95479 0.90984 0.87712 0.94088 0.90715 0.86933 0.80017 0.79237 0.89976 0.87843 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 9.91 71.98 0.71 -3.52 16 2 C -0.12 -5.25 5.64 30.60 0.17 -5.08 16 3 C 0.12 5.78 4.36 86.38 0.38 6.15 16 4 N -0.41 -21.83 2.59 -638.77 -1.65 -23.48 16 5 C -0.36 -20.26 9.39 84.60 0.79 -19.47 16 6 H 0.08 4.77 7.31 -2.91 -0.02 4.75 16 7 C 0.01 0.52 5.12 85.27 0.44 0.95 16 8 N -0.85 -41.52 8.05 21.83 0.18 -41.35 16 9 Si 0.99 40.66 29.58 68.60 2.03 42.69 16 10 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 12 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 13 C 0.37 20.20 5.94 86.95 0.52 20.71 16 14 O -0.63 -38.81 16.74 -3.92 -0.07 -38.88 16 15 C 0.41 18.45 4.96 27.41 0.14 18.59 16 16 O -0.44 -19.34 12.74 -3.81 -0.05 -19.39 16 17 C -0.16 -5.75 5.87 -20.06 -0.12 -5.87 16 18 C -0.11 -3.99 9.44 22.62 0.21 -3.78 16 19 C 0.07 1.93 7.29 22.34 0.16 2.10 16 20 F -0.14 -4.24 17.26 44.97 0.78 -3.46 16 21 C -0.09 -1.80 10.02 22.41 0.22 -1.58 16 22 C -0.09 -1.60 9.65 22.22 0.21 -1.39 16 23 C -0.03 -0.84 5.92 -19.56 -0.12 -0.96 16 24 C -0.12 -2.81 8.69 71.23 0.62 -2.19 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.03 1.24 6.63 -2.39 -0.02 1.22 16 29 H 0.07 3.58 6.25 -2.39 -0.01 3.56 16 30 H 0.11 5.03 5.82 -2.39 -0.01 5.01 16 31 H 0.04 1.75 7.04 -2.39 -0.02 1.73 16 32 H 0.28 12.57 8.29 -92.71 -0.77 11.81 16 33 H 0.11 4.78 7.16 -2.91 -0.02 4.76 16 34 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.19 1.51 8.05 -2.91 -0.02 1.48 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 1.53 8.03 -2.39 -0.02 1.51 16 38 H 0.06 1.92 5.93 -2.39 -0.01 1.90 16 Total: -1.00 -69.38 321.62 6.65 -62.73 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 1.09 Total: 16.45 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 4.35 Total: 4.68 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -1.48 Total: -64.83 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -0.11 Total: -58.26 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -69.38 6.65 -62.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358873532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.707 kcal (2) G-P(sol) polarization free energy of solvation -69.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds