Wall clock time and date at job start Tue Mar 31 2020 08:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81400 * 103.00291 * 2 1 4 4 H 1.09005 * 109.47120 * 55.00013 * 3 2 1 5 5 C 1.53004 * 109.46950 * 295.00044 * 3 2 1 6 6 C 1.52998 * 109.47111 * 175.00160 * 3 2 1 7 7 C 1.52998 * 109.46977 * 294.99916 * 6 3 2 8 8 C 1.50706 * 109.47064 * 180.02562 * 7 6 3 9 9 O 1.21280 * 119.99905 * 354.84109 * 8 7 6 10 10 N 1.34779 * 119.99925 * 174.83593 * 8 7 6 11 11 C 1.37137 * 119.99968 * 5.68127 * 10 8 7 12 12 H 1.08004 * 120.00273 * 55.66293 * 11 10 8 13 13 C 1.38888 * 120.00163 * 235.66457 * 11 10 8 14 14 N 1.31432 * 119.99505 * 9.24700 * 13 11 10 15 15 Si 1.86798 * 120.00391 * 189.24837 * 13 11 10 16 16 H 1.48494 * 109.47349 * 59.99900 * 15 13 11 17 17 H 1.48497 * 109.47040 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47042 * 299.99671 * 15 13 11 19 19 C 1.39785 * 119.99768 * 185.67180 * 10 8 7 20 20 C 1.38962 * 120.07702 * 175.18932 * 19 10 8 21 21 C 1.38078 * 119.92712 * 179.97438 * 20 19 10 22 22 C 1.38316 * 120.07440 * 0.02562 * 21 20 19 23 23 C 1.38314 * 120.15564 * 359.97438 * 22 21 20 24 24 C 1.38083 * 120.07414 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47015 * 300.00307 * 1 2 3 26 26 H 1.09005 * 109.47059 * 59.99611 * 1 2 3 27 27 H 1.08991 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47230 * 60.00220 * 5 3 2 29 29 H 1.09005 * 109.46787 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47406 * 299.99624 * 5 3 2 31 31 H 1.09007 * 109.46941 * 175.00427 * 6 3 2 32 32 H 1.08998 * 109.47559 * 55.00123 * 6 3 2 33 33 H 1.09000 * 109.47496 * 60.00294 * 7 6 3 34 34 H 1.09006 * 109.46959 * 300.00165 * 7 6 3 35 35 H 0.97001 * 119.99540 * 184.99096 * 14 13 11 36 36 H 1.08007 * 120.03591 * 359.71455 * 20 19 10 37 37 H 1.07997 * 119.96713 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.92157 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.95926 * 180.02562 * 23 22 21 40 40 H 1.08009 * 120.03564 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4015 -1.3074 6 6 3.7370 1.9411 0.1257 7 6 4.1989 1.4190 1.4877 8 6 5.6910 1.5906 1.6117 9 8 6.3356 1.9945 0.6671 10 7 6.3091 1.2952 2.7725 11 6 5.6011 0.7295 3.8017 12 1 5.0558 -0.1890 3.6413 13 6 5.5851 1.3375 5.0503 14 7 6.0922 2.5406 5.2018 15 14 4.8431 0.4455 6.5142 16 1 5.5766 -0.8252 6.7434 17 1 4.9486 1.3032 7.7219 18 1 3.4137 0.1497 6.2411 19 6 7.6718 1.5654 2.9271 20 6 8.2887 1.3549 4.1544 21 6 9.6351 1.6224 4.3035 22 6 10.3696 2.0997 3.2331 23 6 9.7590 2.3104 2.0101 24 6 8.4129 2.0450 1.8540 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.6636 2.2779 -1.3969 29 1 1.9877 3.4637 -1.3072 30 1 2.2354 1.9150 -2.1492 31 1 3.9903 2.9976 0.0366 32 1 4.2340 1.3803 -0.6659 33 1 3.9456 0.3626 1.5768 34 1 3.7019 1.9799 2.2793 35 1 6.1470 2.9359 6.0859 36 1 7.7146 0.9866 4.9918 37 1 10.1150 1.4594 5.2571 38 1 11.4225 2.3085 3.3526 39 1 10.3356 2.6828 1.1764 40 1 7.9366 2.2102 0.8987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359021620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:27 Heat of formation + Delta-G solvation = -3.984005 kcal Electronic energy + Delta-G solvation = -21412.857518 eV Core-core repulsion = 18319.137096 eV Total energy + Delta-G solvation = -3093.720422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68603 -37.33321 -35.29048 -34.88952 -31.92879 -30.74972 -29.57458 -28.93478 -28.26340 -25.24644 -24.35584 -21.87312 -21.25988 -20.71644 -19.26255 -17.63484 -16.49061 -16.11200 -15.53264 -15.20123 -15.00402 -14.47620 -14.21560 -14.10618 -13.70061 -13.51427 -13.03115 -12.96863 -12.86732 -12.55383 -12.40202 -12.12140 -11.78794 -11.57174 -11.35074 -11.23077 -11.10936 -10.92182 -10.84313 -10.78947 -10.51045 -10.47959 -10.00581 -9.62564 -9.19041 -8.71073 -8.08420 -7.76030 -7.54495 -6.84751 -6.28156 -4.51414 1.77661 2.46224 2.60307 2.67350 3.06338 3.13575 3.14769 3.79520 3.99043 4.45427 4.76891 4.94397 4.96851 5.09259 5.11798 5.17335 5.33920 5.56341 5.64375 5.69859 5.82714 5.89202 5.89909 5.96915 6.09651 6.16753 6.20587 6.36866 6.58640 6.70627 6.75286 6.79295 6.97763 7.19241 7.28321 7.55014 7.65737 7.73653 7.82513 8.10977 8.47752 8.87849 9.29324 9.67332 10.50016 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.005248 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.800218 B = 5334.417218 C = 6799.605967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.255 6.255 3 C -0.054 4.054 4 H 0.087 0.913 5 C -0.146 4.146 6 C -0.084 4.084 7 C -0.118 4.118 8 C 0.495 3.505 9 O -0.570 6.570 10 N -0.385 5.385 11 C -0.365 4.365 12 H 0.093 0.907 13 C 0.056 3.944 14 N -0.843 5.843 15 Si 0.912 3.088 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.267 1.267 19 C 0.185 3.815 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.175 4.175 23 C -0.121 4.121 24 C -0.194 4.194 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.274 0.726 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 -1.570 -5.527 9.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.029 6.029 3 C -0.183 4.183 4 H 0.105 0.895 5 C -0.205 4.205 6 C -0.123 4.123 7 C -0.157 4.157 8 C 0.287 3.713 9 O -0.455 6.455 10 N -0.092 5.092 11 C -0.493 4.493 12 H 0.111 0.889 13 C -0.154 4.154 14 N -0.476 5.476 15 Si 0.737 3.263 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.192 1.192 19 C 0.088 3.912 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.195 4.195 23 C -0.140 4.140 24 C -0.213 4.213 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.628 -2.075 -5.831 9.069 hybrid contribution -1.143 0.759 1.256 1.860 sum -7.771 -1.316 -4.575 9.113 Atomic orbital electron populations 1.23380 0.95568 1.06019 1.04525 1.87054 1.05879 1.12162 1.97819 1.23257 1.00966 0.93063 1.00983 0.89461 1.22069 1.00631 1.01138 0.96622 1.21229 0.90133 1.02642 0.98312 1.21407 0.93229 1.03803 0.97308 1.20958 0.89996 0.77504 0.82805 1.90158 1.65880 1.49438 1.40040 1.41010 1.04694 1.50988 1.12473 1.19298 1.32137 1.07952 0.89865 0.88896 1.25609 0.95472 0.94349 0.99927 1.70034 1.40668 1.12391 1.24464 0.86229 0.80185 0.79564 0.80295 1.19311 1.20628 1.19176 1.18310 0.84042 0.95381 0.93501 1.21033 0.93393 1.01312 0.97017 1.20766 0.94281 1.01578 0.97699 1.20778 0.98626 1.05768 0.94280 1.20866 0.95108 1.01496 0.96526 1.22811 0.93982 1.02430 1.02117 0.90709 0.90881 0.88504 0.92928 0.91605 0.91345 0.90228 0.90590 0.88717 0.88941 0.91523 0.85135 0.87852 0.88260 0.87800 0.80825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 10.45 101.05 1.06 -0.18 16 2 S -0.25 -3.46 20.60 -107.50 -2.21 -5.68 16 3 C -0.05 -0.71 2.82 -26.73 -0.08 -0.78 16 4 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 5 C -0.15 -1.56 9.10 37.16 0.34 -1.22 16 6 C -0.08 -1.36 3.99 -26.73 -0.11 -1.46 16 7 C -0.12 -2.26 4.35 -27.88 -0.12 -2.38 16 8 C 0.49 11.65 7.57 -10.98 -0.08 11.56 16 9 O -0.57 -13.97 12.37 5.56 0.07 -13.90 16 10 N -0.38 -9.73 2.62 -58.98 -0.15 -9.88 16 11 C -0.37 -9.01 7.61 -14.94 -0.11 -9.12 16 12 H 0.09 2.20 7.85 -52.48 -0.41 1.79 16 13 C 0.06 1.36 3.49 -17.48 -0.06 1.29 16 14 N -0.84 -21.88 11.39 55.49 0.63 -21.25 16 15 Si 0.91 18.68 29.57 -169.99 -5.03 13.65 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 C 0.18 4.72 6.05 -83.70 -0.51 4.21 16 20 C -0.11 -2.61 7.87 -39.37 -0.31 -2.92 16 21 C -0.12 -2.68 10.04 -39.61 -0.40 -3.08 16 22 C -0.18 -3.57 10.04 -39.52 -0.40 -3.97 16 23 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 24 C -0.19 -4.69 9.06 -39.37 -0.36 -5.05 16 25 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.07 0.62 7.14 -51.92 -0.37 0.25 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.49 6.92 -51.93 -0.36 0.13 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 33 H 0.09 1.79 7.13 -51.93 -0.37 1.42 16 34 H 0.09 1.81 8.04 -51.93 -0.42 1.39 16 35 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 36 H 0.13 3.29 5.16 -52.48 -0.27 3.02 16 37 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.18 4.34 4.50 -56.37 -0.25 4.09 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -27.97 336.48 -8.97 -36.94 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.81 Total: 11.11 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.53 Total: -16.06 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.48 Total: -31.13 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.07 Total: -13.90 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.21 Total: -5.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.97 -8.97 -36.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359021620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.956 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds