Wall clock time and date at job start Tue Mar 31 2020 08:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81400 * 103.00291 * 2 1 4 4 H 1.09005 * 109.47120 * 55.00013 * 3 2 1 5 5 C 1.53004 * 109.46950 * 295.00044 * 3 2 1 6 6 C 1.52998 * 109.47111 * 175.00160 * 3 2 1 7 7 C 1.52998 * 109.46977 * 294.99916 * 6 3 2 8 8 C 1.50706 * 109.47064 * 180.02562 * 7 6 3 9 9 O 1.21280 * 119.99905 * 354.84109 * 8 7 6 10 10 N 1.34779 * 119.99925 * 174.83593 * 8 7 6 11 11 C 1.37137 * 119.99968 * 5.68127 * 10 8 7 12 12 H 1.08004 * 120.00273 * 55.66293 * 11 10 8 13 13 C 1.38888 * 120.00163 * 235.66457 * 11 10 8 14 14 N 1.31432 * 119.99505 * 9.24700 * 13 11 10 15 15 Si 1.86798 * 120.00391 * 189.24837 * 13 11 10 16 16 H 1.48494 * 109.47349 * 59.99900 * 15 13 11 17 17 H 1.48497 * 109.47040 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47042 * 299.99671 * 15 13 11 19 19 C 1.39785 * 119.99768 * 185.67180 * 10 8 7 20 20 C 1.38962 * 120.07702 * 175.18932 * 19 10 8 21 21 C 1.38078 * 119.92712 * 179.97438 * 20 19 10 22 22 C 1.38316 * 120.07440 * 0.02562 * 21 20 19 23 23 C 1.38314 * 120.15564 * 359.97438 * 22 21 20 24 24 C 1.38083 * 120.07414 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47015 * 300.00307 * 1 2 3 26 26 H 1.09005 * 109.47059 * 59.99611 * 1 2 3 27 27 H 1.08991 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47230 * 60.00220 * 5 3 2 29 29 H 1.09005 * 109.46787 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47406 * 299.99624 * 5 3 2 31 31 H 1.09007 * 109.46941 * 175.00427 * 6 3 2 32 32 H 1.08998 * 109.47559 * 55.00123 * 6 3 2 33 33 H 1.09000 * 109.47496 * 60.00294 * 7 6 3 34 34 H 1.09006 * 109.46959 * 300.00165 * 7 6 3 35 35 H 0.97001 * 119.99540 * 184.99096 * 14 13 11 36 36 H 1.08007 * 120.03591 * 359.71455 * 20 19 10 37 37 H 1.07997 * 119.96713 * 179.97438 * 21 20 19 38 38 H 1.07994 * 119.92157 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.95926 * 180.02562 * 23 22 21 40 40 H 1.08009 * 120.03564 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4015 -1.3074 6 6 3.7370 1.9411 0.1257 7 6 4.1989 1.4190 1.4877 8 6 5.6910 1.5906 1.6117 9 8 6.3356 1.9945 0.6671 10 7 6.3091 1.2952 2.7725 11 6 5.6011 0.7295 3.8017 12 1 5.0558 -0.1890 3.6413 13 6 5.5851 1.3375 5.0503 14 7 6.0922 2.5406 5.2018 15 14 4.8431 0.4455 6.5142 16 1 5.5766 -0.8252 6.7434 17 1 4.9486 1.3032 7.7219 18 1 3.4137 0.1497 6.2411 19 6 7.6718 1.5654 2.9271 20 6 8.2887 1.3549 4.1544 21 6 9.6351 1.6224 4.3035 22 6 10.3696 2.0997 3.2331 23 6 9.7590 2.3104 2.0101 24 6 8.4129 2.0450 1.8540 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.6636 2.2779 -1.3969 29 1 1.9877 3.4637 -1.3072 30 1 2.2354 1.9150 -2.1492 31 1 3.9903 2.9976 0.0366 32 1 4.2340 1.3803 -0.6659 33 1 3.9456 0.3626 1.5768 34 1 3.7019 1.9799 2.2793 35 1 6.1470 2.9359 6.0859 36 1 7.7146 0.9866 4.9918 37 1 10.1150 1.4594 5.2571 38 1 11.4225 2.3085 3.3526 39 1 10.3356 2.6828 1.1764 40 1 7.9366 2.2102 0.8987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359021620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:27 Heat of formation + Delta-G solvation = -16.832824 kcal Electronic energy + Delta-G solvation = -21413.414685 eV Core-core repulsion = 18319.137096 eV Total energy + Delta-G solvation = -3094.277589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49368 -39.06348 -36.87425 -36.39565 -33.80987 -32.10595 -31.32460 -30.29212 -29.37787 -27.09791 -25.73421 -23.44340 -22.86229 -22.19154 -21.07516 -19.43195 -17.97470 -17.58609 -17.29739 -16.87156 -16.40895 -16.16546 -15.62379 -15.30773 -15.09923 -14.70091 -14.62789 -14.46103 -14.16085 -14.02124 -13.71559 -13.41480 -13.29840 -13.22412 -12.99750 -12.79672 -12.50837 -12.46546 -12.26781 -12.12563 -12.00149 -11.89340 -11.72115 -11.01130 -10.65330 -10.54023 -9.90404 -9.53109 -8.70337 -8.60583 -8.12682 -6.43899 0.69674 0.80262 0.81974 1.42857 1.45339 1.54143 1.73733 2.00966 2.26187 2.79946 2.93337 3.36754 3.76245 3.84365 4.13817 4.22535 4.32257 4.37383 4.38564 4.41209 4.45080 4.58057 4.60496 4.77401 4.83480 4.86134 4.96346 4.97681 5.01529 5.11427 5.18678 5.23348 5.31016 5.38612 5.44411 5.80756 5.89807 5.91541 6.06692 6.25214 6.63929 7.00182 7.44366 7.82033 8.65079 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.005248 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.800218 B = 5334.417218 C = 6799.605967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.315 6.315 3 C -0.041 4.041 4 H 0.092 0.908 5 C -0.140 4.140 6 C -0.075 4.075 7 C -0.103 4.103 8 C 0.477 3.523 9 O -0.588 6.588 10 N -0.399 5.399 11 C -0.378 4.378 12 H 0.095 0.905 13 C 0.024 3.976 14 N -0.877 5.877 15 Si 0.976 3.024 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.257 1.257 19 C 0.151 3.849 20 C -0.129 4.129 21 C -0.125 4.125 22 C -0.166 4.166 23 C -0.120 4.120 24 C -0.219 4.219 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.274 0.726 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 -1.632 -5.214 9.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.090 6.090 3 C -0.170 4.170 4 H 0.110 0.890 5 C -0.199 4.199 6 C -0.113 4.113 7 C -0.143 4.143 8 C 0.271 3.729 9 O -0.474 6.474 10 N -0.107 5.107 11 C -0.505 4.505 12 H 0.113 0.887 13 C -0.183 4.183 14 N -0.510 5.510 15 Si 0.798 3.202 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.181 1.181 19 C 0.055 3.945 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.185 4.185 23 C -0.138 4.138 24 C -0.239 4.239 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.127 0.873 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.134 0.866 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.066 -2.143 -5.531 9.226 hybrid contribution -0.928 0.777 1.124 1.652 sum -7.994 -1.365 -4.407 9.230 Atomic orbital electron populations 1.23426 0.91365 1.07243 1.05753 1.87256 1.10557 1.13151 1.98002 1.23135 0.98412 0.92768 1.02670 0.88968 1.22035 1.01826 1.01205 0.94840 1.21112 0.92556 1.01776 0.95897 1.21333 0.90201 1.03838 0.98891 1.21727 0.91698 0.77124 0.82324 1.90134 1.66692 1.50173 1.40398 1.41284 1.05081 1.51284 1.13028 1.19540 1.32399 1.08195 0.90400 0.88695 1.26326 0.95278 0.94672 1.01983 1.70147 1.42051 1.13905 1.24914 0.85253 0.79758 0.78323 0.76820 1.18937 1.20543 1.18119 1.18698 0.84588 0.96723 0.94512 1.21073 0.94809 1.02782 0.96291 1.21161 0.93280 1.00415 0.99522 1.21217 1.00503 1.03687 0.93096 1.21249 0.94083 1.00303 0.98206 1.22846 0.95579 1.03956 1.01491 0.89954 0.89113 0.87287 0.90837 0.90829 0.91717 0.90744 0.91813 0.88660 0.89605 0.91599 0.86593 0.84927 0.84004 0.84664 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.45 113.37 1.19 -0.69 16 2 S -0.31 -8.36 20.60 -56.49 -1.16 -9.52 16 3 C -0.04 -1.06 2.82 30.59 0.09 -0.97 16 4 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 5 C -0.14 -2.78 9.10 71.98 0.66 -2.12 16 6 C -0.07 -2.46 3.99 30.59 0.12 -2.34 16 7 C -0.10 -4.10 4.35 29.85 0.13 -3.97 16 8 C 0.48 23.52 7.57 87.66 0.66 24.18 16 9 O -0.59 -30.17 12.37 -3.03 -0.04 -30.21 16 10 N -0.40 -21.00 2.62 -458.89 -1.20 -22.20 16 11 C -0.38 -19.21 7.61 84.02 0.64 -18.57 16 12 H 0.10 4.62 7.85 -2.91 -0.02 4.60 16 13 C 0.02 1.16 3.49 84.91 0.30 1.46 16 14 N -0.88 -46.46 11.39 21.65 0.25 -46.21 16 15 Si 0.98 38.39 29.57 68.60 2.03 40.42 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 17 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 18 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 19 C 0.15 7.97 6.05 38.22 0.23 8.20 16 20 C -0.13 -6.37 7.87 22.41 0.18 -6.19 16 21 C -0.13 -5.21 10.04 22.25 0.22 -4.98 16 22 C -0.17 -6.32 10.04 22.31 0.22 -6.09 16 23 C -0.12 -4.94 10.04 22.25 0.22 -4.72 16 24 C -0.22 -10.82 9.06 22.40 0.20 -10.62 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.25 7.14 -2.39 -0.02 1.24 16 27 H 0.11 1.62 8.14 -2.40 -0.02 1.60 16 28 H 0.07 1.16 6.92 -2.39 -0.02 1.14 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 32 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 33 H 0.10 3.76 7.13 -2.39 -0.02 3.74 16 34 H 0.09 3.49 8.04 -2.38 -0.02 3.47 16 35 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16 36 H 0.12 5.98 5.16 -2.91 -0.01 5.96 16 37 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.16 8.33 4.50 -64.47 -0.29 8.04 16 Total: -1.00 -62.37 336.48 5.68 -56.69 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.75 Total: 38.46 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 5.06 Total: -27.42 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -0.96 Total: -68.42 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.04 Total: -30.21 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -62.37 5.68 -56.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359021620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.860 kcal (2) G-P(sol) polarization free energy of solvation -62.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds