Wall clock time and date at job start Tue Mar 31 2020 08:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81401 * 103.00059 * 2 1 4 4 H 1.08997 * 109.47387 * 305.00555 * 3 2 1 5 5 C 1.53006 * 109.46930 * 65.00458 * 3 2 1 6 6 C 1.53004 * 109.46768 * 184.99917 * 3 2 1 7 7 C 1.52999 * 109.46952 * 65.00861 * 6 3 2 8 8 C 1.50701 * 109.46862 * 179.97438 * 7 6 3 9 9 O 1.21280 * 120.00260 * 359.71853 * 8 7 6 10 10 N 1.34777 * 119.99727 * 179.97438 * 8 7 6 11 11 C 1.37140 * 120.00125 * 354.67885 * 10 8 7 12 12 H 1.08002 * 119.99887 * 344.73510 * 11 10 8 13 13 C 1.38895 * 120.00128 * 164.73801 * 11 10 8 14 14 N 1.31421 * 119.99542 * 343.61830 * 13 11 10 15 15 Si 1.86797 * 119.99845 * 163.62273 * 13 11 10 16 16 H 1.48497 * 109.47369 * 90.00018 * 15 13 11 17 17 H 1.48499 * 109.46691 * 210.00089 * 15 13 11 18 18 H 1.48498 * 109.47275 * 329.99799 * 15 13 11 19 19 C 1.39785 * 119.99882 * 174.67214 * 10 8 7 20 20 C 1.38965 * 120.07486 * 101.21158 * 19 10 8 21 21 C 1.38085 * 119.91881 * 179.79525 * 20 19 10 22 22 C 1.38312 * 120.07972 * 0.45404 * 21 20 19 23 23 C 1.38310 * 120.15572 * 359.79908 * 22 21 20 24 24 C 1.38090 * 120.07594 * 359.97175 * 23 22 21 25 25 H 1.08998 * 109.47163 * 59.99086 * 1 2 3 26 26 H 1.08993 * 109.47411 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46710 * 299.99936 * 1 2 3 28 28 H 1.09003 * 109.46764 * 299.99969 * 5 3 2 29 29 H 1.08997 * 109.47006 * 59.99864 * 5 3 2 30 30 H 1.08999 * 109.47262 * 179.97438 * 5 3 2 31 31 H 1.08993 * 109.47237 * 305.00246 * 6 3 2 32 32 H 1.09005 * 109.46655 * 185.00513 * 6 3 2 33 33 H 1.08994 * 109.47180 * 59.99400 * 7 6 3 34 34 H 1.09004 * 109.46728 * 299.99663 * 7 6 3 35 35 H 0.97002 * 119.99681 * 185.01363 * 14 13 11 36 36 H 1.08001 * 120.04199 * 359.97438 * 20 19 10 37 37 H 1.08000 * 119.96013 * 180.25423 * 21 20 19 38 38 H 1.07998 * 119.92197 * 179.76657 * 22 21 20 39 39 H 1.07997 * 119.96309 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.03393 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 -0.8417 5 6 1.7429 2.4015 1.3075 6 6 3.7371 1.9411 -0.1257 7 6 4.1989 1.4192 -1.4878 8 6 5.6910 1.5907 -1.6118 9 8 6.3220 2.0867 -0.7026 10 7 6.3233 1.1977 -2.7353 11 6 5.6286 0.5431 -3.7200 12 1 4.6558 0.1247 -3.5076 13 6 6.1760 0.4182 -4.9904 14 7 7.1843 1.1809 -5.3492 15 14 5.4789 -0.8336 -6.1888 16 1 4.3965 -0.2049 -6.9876 17 1 6.5561 -1.3024 -7.0971 18 1 4.9300 -1.9889 -5.4343 19 6 7.6873 1.4573 -2.8968 20 6 8.6186 0.4488 -2.6804 21 6 9.9649 0.7077 -2.8450 22 6 10.3876 1.9715 -3.2156 23 6 9.4638 2.9790 -3.4267 24 6 8.1156 2.7259 -3.2685 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.6637 2.2778 1.3970 29 1 2.2356 1.9149 2.1492 30 1 1.9885 3.4635 1.3077 31 1 4.2340 1.3803 0.6658 32 1 3.9903 2.9975 -0.0365 33 1 3.7019 1.9800 -2.2793 34 1 3.9456 0.3627 -1.5769 35 1 7.5195 1.1455 -6.2588 36 1 8.2896 -0.5370 -2.3867 37 1 10.6890 -0.0766 -2.6810 38 1 11.4415 2.1721 -3.3400 39 1 9.7973 3.9647 -3.7156 40 1 7.3949 3.5132 -3.4331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359021622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:32 Heat of formation + Delta-G solvation = -12.480760 kcal Electronic energy + Delta-G solvation = -21351.867991 eV Core-core repulsion = 18257.779122 eV Total energy + Delta-G solvation = -3094.088869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.33623 -37.38058 -35.26360 -34.56367 -31.62662 -30.63977 -29.83826 -28.95581 -28.33291 -25.00741 -24.37808 -21.79058 -21.47545 -20.77315 -19.08015 -17.56726 -16.48986 -16.10084 -15.48798 -15.05430 -14.73148 -14.43626 -14.29840 -14.07113 -13.76611 -13.50706 -13.41891 -12.95646 -12.68763 -12.40787 -12.29114 -12.12548 -11.58246 -11.48460 -11.41336 -11.12390 -11.11989 -10.88317 -10.70465 -10.50339 -10.47801 -10.26577 -10.21504 -9.60922 -9.37231 -8.53657 -8.08349 -7.82352 -7.54122 -7.50983 -6.21497 -3.97439 1.78370 2.51282 2.55938 2.68195 3.10029 3.21094 3.24096 3.81194 4.05474 4.54026 4.90067 4.95387 4.99109 5.09515 5.11293 5.12034 5.34706 5.57762 5.65935 5.72367 5.83173 5.85111 5.89039 5.94633 6.03846 6.11214 6.20098 6.38741 6.50242 6.58711 6.62052 6.72868 6.88519 7.09461 7.36775 7.40687 7.49580 7.68249 7.81304 8.02794 8.47609 9.03769 9.41387 9.84813 10.64123 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.005042 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.081359 B = 5551.568262 C = 6840.401932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.254 6.254 3 C -0.055 4.055 4 H 0.086 0.914 5 C -0.146 4.146 6 C -0.081 4.081 7 C -0.119 4.119 8 C 0.465 3.535 9 O -0.599 6.599 10 N -0.416 5.416 11 C -0.349 4.349 12 H 0.104 0.896 13 C 0.043 3.957 14 N -0.850 5.850 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.268 1.268 19 C 0.242 3.758 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.147 4.147 23 C -0.122 4.122 24 C -0.067 4.067 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.271 0.729 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.667 0.539 5.488 9.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.028 6.028 3 C -0.183 4.183 4 H 0.104 0.896 5 C -0.205 4.205 6 C -0.120 4.120 7 C -0.159 4.159 8 C 0.255 3.745 9 O -0.485 6.485 10 N -0.132 5.132 11 C -0.475 4.475 12 H 0.122 0.878 13 C -0.164 4.164 14 N -0.485 5.485 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.192 1.192 19 C 0.151 3.849 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.166 4.166 23 C -0.141 4.141 24 C -0.087 4.087 25 H 0.093 0.907 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.531 -0.121 5.741 8.697 hybrid contribution -1.259 0.302 -1.158 1.737 sum -7.790 0.181 4.583 9.040 Atomic orbital electron populations 1.23382 0.95657 1.06015 1.04481 1.87121 1.05754 1.12142 1.97815 1.23279 1.01103 0.93052 1.00910 0.89555 1.22070 1.00589 1.01129 0.96670 1.21188 0.89816 1.02668 0.98355 1.21430 0.93887 1.03427 0.97132 1.20224 0.89523 0.81722 0.83010 1.90559 1.68195 1.49448 1.40317 1.41384 1.05091 1.50516 1.16249 1.19628 1.03920 1.34204 0.89793 0.87799 1.25264 0.96123 0.97133 0.97882 1.69936 1.24569 1.35212 1.18790 0.86063 0.78440 0.81037 0.80046 1.20319 1.20735 1.19239 1.17109 0.83429 0.92193 0.92162 1.20995 0.92775 0.98602 1.01996 1.20658 0.94979 0.96443 1.02101 1.20720 0.98088 0.93809 1.03933 1.20673 0.93118 0.98193 1.02118 1.20785 0.94777 0.96273 0.96841 0.90748 0.88509 0.90892 0.92947 0.91351 0.91618 0.90705 0.90194 0.89793 0.89033 0.91794 0.87584 0.87688 0.87841 0.87676 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 10.45 101.05 1.06 -0.18 16 2 S -0.25 -3.50 20.60 -107.50 -2.21 -5.71 16 3 C -0.05 -0.72 2.82 -26.73 -0.08 -0.79 16 4 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.15 -1.57 9.10 37.16 0.34 -1.23 16 6 C -0.08 -1.33 3.97 -26.73 -0.11 -1.44 16 7 C -0.12 -2.28 4.08 -27.88 -0.11 -2.40 16 8 C 0.46 11.18 7.58 -10.98 -0.08 11.09 16 9 O -0.60 -15.75 15.96 5.56 0.09 -15.66 16 10 N -0.42 -10.56 2.66 -58.98 -0.16 -10.72 16 11 C -0.35 -8.77 9.19 -14.93 -0.14 -8.90 16 12 H 0.10 2.46 6.46 -52.49 -0.34 2.12 16 13 C 0.04 1.08 5.24 -17.48 -0.09 0.99 16 14 N -0.85 -22.10 10.34 55.49 0.57 -21.52 16 15 Si 0.92 19.54 29.59 -169.99 -5.03 14.51 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 C 0.24 6.11 2.29 -83.70 -0.19 5.92 16 20 C -0.12 -2.95 9.95 -39.37 -0.39 -3.34 16 21 C -0.12 -2.57 10.04 -39.61 -0.40 -2.96 16 22 C -0.15 -2.93 10.04 -39.53 -0.40 -3.33 16 23 C -0.12 -2.57 10.04 -39.61 -0.40 -2.97 16 24 C -0.07 -1.63 8.66 -39.37 -0.34 -1.97 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.62 7.14 -51.92 -0.37 0.25 16 28 H 0.05 0.49 6.92 -51.93 -0.36 0.13 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.09 1.77 6.51 -51.93 -0.34 1.43 16 35 H 0.27 6.81 8.32 -40.82 -0.34 6.47 16 36 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 40 H 0.10 2.53 8.06 -52.49 -0.42 2.10 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -29.27 344.60 -8.91 -38.18 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.03 Total: 7.25 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.33 Total: -11.52 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.42 Total: -32.24 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.09 Total: -15.66 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.21 Total: -5.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.27 -8.91 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359021622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.697 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds