Wall clock time and date at job start Tue Mar 31 2020 08:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81401 * 103.00059 * 2 1 4 4 H 1.08997 * 109.47387 * 305.00555 * 3 2 1 5 5 C 1.53006 * 109.46930 * 65.00458 * 3 2 1 6 6 C 1.53004 * 109.46768 * 184.99917 * 3 2 1 7 7 C 1.52999 * 109.46952 * 65.00861 * 6 3 2 8 8 C 1.50701 * 109.46862 * 179.97438 * 7 6 3 9 9 O 1.21280 * 120.00260 * 359.71853 * 8 7 6 10 10 N 1.34777 * 119.99727 * 179.97438 * 8 7 6 11 11 C 1.37140 * 120.00125 * 354.67885 * 10 8 7 12 12 H 1.08002 * 119.99887 * 344.73510 * 11 10 8 13 13 C 1.38895 * 120.00128 * 164.73801 * 11 10 8 14 14 N 1.31421 * 119.99542 * 343.61830 * 13 11 10 15 15 Si 1.86797 * 119.99845 * 163.62273 * 13 11 10 16 16 H 1.48497 * 109.47369 * 90.00018 * 15 13 11 17 17 H 1.48499 * 109.46691 * 210.00089 * 15 13 11 18 18 H 1.48498 * 109.47275 * 329.99799 * 15 13 11 19 19 C 1.39785 * 119.99882 * 174.67214 * 10 8 7 20 20 C 1.38965 * 120.07486 * 101.21158 * 19 10 8 21 21 C 1.38085 * 119.91881 * 179.79525 * 20 19 10 22 22 C 1.38312 * 120.07972 * 0.45404 * 21 20 19 23 23 C 1.38310 * 120.15572 * 359.79908 * 22 21 20 24 24 C 1.38090 * 120.07594 * 359.97175 * 23 22 21 25 25 H 1.08998 * 109.47163 * 59.99086 * 1 2 3 26 26 H 1.08993 * 109.47411 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46710 * 299.99936 * 1 2 3 28 28 H 1.09003 * 109.46764 * 299.99969 * 5 3 2 29 29 H 1.08997 * 109.47006 * 59.99864 * 5 3 2 30 30 H 1.08999 * 109.47262 * 179.97438 * 5 3 2 31 31 H 1.08993 * 109.47237 * 305.00246 * 6 3 2 32 32 H 1.09005 * 109.46655 * 185.00513 * 6 3 2 33 33 H 1.08994 * 109.47180 * 59.99400 * 7 6 3 34 34 H 1.09004 * 109.46728 * 299.99663 * 7 6 3 35 35 H 0.97002 * 119.99681 * 185.01363 * 14 13 11 36 36 H 1.08001 * 120.04199 * 359.97438 * 20 19 10 37 37 H 1.08000 * 119.96013 * 180.25423 * 21 20 19 38 38 H 1.07998 * 119.92197 * 179.76657 * 22 21 20 39 39 H 1.07997 * 119.96309 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.03393 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 -0.8417 5 6 1.7429 2.4015 1.3075 6 6 3.7371 1.9411 -0.1257 7 6 4.1989 1.4192 -1.4878 8 6 5.6910 1.5907 -1.6118 9 8 6.3220 2.0867 -0.7026 10 7 6.3233 1.1977 -2.7353 11 6 5.6286 0.5431 -3.7200 12 1 4.6558 0.1247 -3.5076 13 6 6.1760 0.4182 -4.9904 14 7 7.1843 1.1809 -5.3492 15 14 5.4789 -0.8336 -6.1888 16 1 4.3965 -0.2049 -6.9876 17 1 6.5561 -1.3024 -7.0971 18 1 4.9300 -1.9889 -5.4343 19 6 7.6873 1.4573 -2.8968 20 6 8.6186 0.4488 -2.6804 21 6 9.9649 0.7077 -2.8450 22 6 10.3876 1.9715 -3.2156 23 6 9.4638 2.9790 -3.4267 24 6 8.1156 2.7259 -3.2685 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.6637 2.2778 1.3970 29 1 2.2356 1.9149 2.1492 30 1 1.9885 3.4635 1.3077 31 1 4.2340 1.3803 0.6658 32 1 3.9903 2.9975 -0.0365 33 1 3.7019 1.9800 -2.2793 34 1 3.9456 0.3627 -1.5769 35 1 7.5195 1.1455 -6.2588 36 1 8.2896 -0.5370 -2.3867 37 1 10.6890 -0.0766 -2.6810 38 1 11.4415 2.1721 -3.3400 39 1 9.7973 3.9647 -3.7156 40 1 7.3949 3.5132 -3.4331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359021622.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:31 Heat of formation + Delta-G solvation = -26.337986 kcal Electronic energy + Delta-G solvation = -21352.468886 eV Core-core repulsion = 18257.779122 eV Total energy + Delta-G solvation = -3094.689763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16217 -39.11188 -36.74435 -36.22488 -33.55088 -31.99725 -31.56340 -30.36487 -29.39206 -26.88294 -25.78307 -23.25970 -23.16782 -22.20152 -20.95445 -19.34441 -18.00655 -17.52413 -17.23573 -16.58078 -16.42448 -16.16016 -15.81010 -15.27374 -15.07998 -14.97864 -14.59355 -14.33689 -14.10673 -13.81357 -13.64258 -13.39811 -13.28220 -13.16756 -12.84237 -12.78256 -12.49236 -12.23044 -12.18693 -12.07076 -11.99262 -11.94765 -11.85727 -11.22057 -10.63965 -10.43729 -9.96666 -9.56850 -9.30821 -8.60999 -8.09380 -5.93299 0.77653 0.80597 0.82804 1.39233 1.46447 1.56784 1.74656 1.95566 2.27759 2.88346 3.09852 3.26533 3.78898 3.86289 4.16750 4.23536 4.28517 4.34727 4.38294 4.39196 4.41504 4.46343 4.58742 4.74220 4.81390 4.84775 4.86239 4.90211 4.97930 5.12703 5.14197 5.23137 5.31006 5.36439 5.46232 5.66653 5.78650 5.86204 6.03163 6.26747 6.60181 7.11111 7.52669 7.95840 8.73764 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.005042 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.081359 B = 5551.568262 C = 6840.401932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.319 6.319 3 C -0.040 4.040 4 H 0.096 0.904 5 C -0.141 4.141 6 C -0.072 4.072 7 C -0.105 4.105 8 C 0.449 3.551 9 O -0.631 6.631 10 N -0.426 5.426 11 C -0.367 4.367 12 H 0.112 0.888 13 C 0.004 3.996 14 N -0.871 5.871 15 Si 0.983 3.017 16 H -0.269 1.269 17 H -0.285 1.285 18 H -0.264 1.264 19 C 0.213 3.787 20 C -0.153 4.153 21 C -0.120 4.120 22 C -0.142 4.142 23 C -0.121 4.121 24 C -0.095 4.095 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.096 0.904 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.209 0.381 5.078 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.094 6.094 3 C -0.169 4.169 4 H 0.115 0.885 5 C -0.199 4.199 6 C -0.111 4.111 7 C -0.145 4.145 8 C 0.241 3.759 9 O -0.519 6.519 10 N -0.142 5.142 11 C -0.493 4.493 12 H 0.129 0.871 13 C -0.201 4.201 14 N -0.506 5.506 15 Si 0.807 3.193 16 H -0.194 1.194 17 H -0.211 1.211 18 H -0.188 1.188 19 C 0.123 3.877 20 C -0.172 4.172 21 C -0.139 4.139 22 C -0.159 4.159 23 C -0.139 4.139 24 C -0.114 4.114 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.157 0.843 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.083 -0.275 5.333 8.871 hybrid contribution -1.029 0.370 -1.021 1.496 sum -8.112 0.096 4.313 9.188 Atomic orbital electron populations 1.23423 0.91262 1.07211 1.05807 1.87346 1.10643 1.13383 1.98014 1.23151 0.98351 0.92613 1.02766 0.88532 1.22038 1.01821 1.01243 0.94843 1.21065 0.92397 1.01735 0.95896 1.21366 0.90560 1.03549 0.99024 1.21074 0.91352 0.81097 0.82386 1.90509 1.69341 1.50859 1.41206 1.41660 1.05652 1.50373 1.16540 1.19956 1.04504 1.34605 0.90213 0.87073 1.26056 0.96468 0.98355 0.99213 1.70097 1.25515 1.36175 1.18842 0.85075 0.77733 0.78759 0.77769 1.19406 1.21061 1.18776 1.17444 0.83739 0.93112 0.93426 1.21142 0.94312 0.98043 1.03751 1.21090 0.94254 0.98030 1.00490 1.21206 1.00080 0.92743 1.01914 1.21080 0.92010 1.00135 1.00710 1.20820 0.96106 0.95611 0.98891 0.89779 0.87385 0.89138 0.90745 0.91999 0.90724 0.92584 0.90658 0.89220 0.89160 0.92082 0.88597 0.84274 0.83392 0.84608 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.45 113.37 1.19 -0.67 16 2 S -0.32 -8.57 20.60 -56.49 -1.16 -9.73 16 3 C -0.04 -1.03 2.82 30.60 0.09 -0.94 16 4 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 5 C -0.14 -2.79 9.10 71.98 0.66 -2.14 16 6 C -0.07 -2.42 3.97 30.60 0.12 -2.30 16 7 C -0.11 -4.18 4.08 29.85 0.12 -4.05 16 8 C 0.45 22.59 7.58 87.66 0.66 23.25 16 9 O -0.63 -34.78 15.96 -3.03 -0.05 -34.83 16 10 N -0.43 -22.51 2.66 -458.89 -1.22 -23.73 16 11 C -0.37 -18.87 9.19 84.02 0.77 -18.10 16 12 H 0.11 5.36 6.46 -2.91 -0.02 5.34 16 13 C 0.00 0.20 5.24 84.91 0.44 0.64 16 14 N -0.87 -45.89 10.34 21.65 0.22 -45.67 16 15 Si 0.98 40.12 29.59 68.60 2.03 42.15 16 16 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 19 C 0.21 11.12 2.29 38.22 0.09 11.21 16 20 C -0.15 -7.41 9.95 22.41 0.22 -7.19 16 21 C -0.12 -4.84 10.04 22.25 0.22 -4.62 16 22 C -0.14 -5.27 10.04 22.30 0.22 -5.05 16 23 C -0.12 -4.96 10.04 22.25 0.22 -4.74 16 24 C -0.09 -4.69 8.66 22.41 0.19 -4.50 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.09 1.24 7.14 -2.39 -0.02 1.22 16 28 H 0.07 1.16 6.92 -2.39 -0.02 1.15 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 32 H 0.07 2.56 8.10 -2.38 -0.02 2.54 16 33 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.09 3.61 6.51 -2.39 -0.02 3.59 16 35 H 0.27 13.61 8.32 -92.71 -0.77 12.83 16 36 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 37 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 38 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.08 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -65.55 344.60 6.06 -59.49 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 1.01 Total: 31.49 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 5.23 Total: -19.18 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -1.00 Total: -69.40 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.05 Total: -34.83 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -65.55 6.06 -59.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359021622.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.156 kcal (2) G-P(sol) polarization free energy of solvation -65.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds