Wall clock time and date at job start Tue Mar 31 2020 06:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99813 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00047 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47231 * 89.99796 * 10 8 6 12 12 H 1.48499 * 109.47342 * 210.00322 * 10 8 6 13 13 H 1.48505 * 109.46935 * 330.00024 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 O 1.42899 * 109.46876 * 179.72354 * 16 14 4 18 18 C 1.35897 * 116.99793 * 179.97438 * 17 16 14 19 19 C 1.38778 * 120.04357 * 359.72176 * 18 17 16 20 20 C 1.38131 * 119.99403 * 179.74934 * 19 18 17 21 21 C 1.38250 * 120.07826 * 0.52819 * 20 19 18 22 22 C 1.38474 * 120.08843 * 359.74686 * 21 20 19 23 23 F 1.35100 * 119.99736 * 180.02562 * 22 21 20 24 24 C 1.38382 * 120.00251 * 359.97438 * 22 21 20 25 25 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 29 29 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 30 30 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 31 31 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 32 32 H 0.97004 * 119.99796 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 35 35 H 1.07997 * 119.99649 * 0.02562 * 19 18 17 36 36 H 1.07998 * 119.96155 * 180.27265 * 20 19 18 37 37 H 1.08002 * 119.95596 * 179.76838 * 21 20 19 38 38 H 1.08003 * 120.03986 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 2.7680 5.3571 3.6569 10 14 1.7260 3.2129 5.0685 11 1 2.7827 2.7226 5.9895 12 1 0.8496 4.1727 5.7868 13 1 0.9149 2.0648 4.5898 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 8 6.0608 -0.0995 -0.2570 18 6 6.6236 -0.6183 -1.3800 19 6 5.8781 -0.7233 -2.5458 20 6 6.4527 -1.2460 -3.6881 21 6 7.7668 -1.6751 -3.6686 22 6 8.5119 -1.5771 -2.5056 23 9 9.7961 -1.9965 -2.4888 24 6 7.9416 -1.0487 -1.3609 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0990 1.3603 3.2260 32 1 2.5391 5.8658 4.4505 33 1 4.0730 -0.5248 -0.6265 34 1 4.6113 1.1022 -1.1075 35 1 4.8503 -0.3922 -2.5612 36 1 5.8734 -1.3234 -4.5963 37 1 8.2129 -2.0869 -4.5619 38 1 8.5224 -0.9716 -0.4535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359400786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:15 Heat of formation + Delta-G solvation = -60.019092 kcal Electronic energy + Delta-G solvation = -22615.707152 eV Core-core repulsion = 18953.343690 eV Total energy + Delta-G solvation = -3662.363462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.11221 -40.44400 -39.11482 -37.24483 -35.85764 -33.29591 -32.24380 -31.30025 -30.16411 -29.28556 -27.32623 -25.64083 -23.21868 -22.92374 -21.88098 -20.19770 -18.80674 -18.74723 -17.07593 -16.96689 -16.52643 -16.46118 -16.30900 -15.83900 -15.70403 -15.47313 -14.77845 -14.36629 -14.34194 -13.97122 -13.66301 -13.19796 -13.01704 -12.67794 -12.45733 -12.30338 -12.07088 -11.90017 -11.70658 -11.38635 -11.30331 -11.07090 -11.00499 -10.58352 -10.20736 -9.63141 -9.40242 -9.18252 -9.11981 -8.63396 -8.50905 -7.91497 -6.13329 -4.13050 0.89050 1.06534 2.21060 2.67422 3.08387 3.26512 3.32375 3.34782 3.36010 3.82028 4.17111 4.35600 4.47208 4.69773 4.74314 4.77200 4.88027 5.00625 5.09723 5.12313 5.16166 5.19107 5.22367 5.42260 5.69991 5.82814 5.84453 5.98293 5.99078 6.06714 6.44890 6.58159 6.59285 6.71850 6.84889 7.10938 7.22954 7.54060 8.02030 8.39577 8.74601 8.89496 9.46086 10.99826 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.003536 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.242419 B = 7916.933341 C = 8813.006051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.176 4.176 3 C 0.132 3.868 4 N -0.584 5.584 5 C 0.219 3.781 6 C -0.533 4.533 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.510 3.490 15 O -0.513 6.513 16 C 0.041 3.959 17 O -0.282 6.282 18 C 0.166 3.834 19 C -0.223 4.223 20 C -0.049 4.049 21 C -0.198 4.198 22 C 0.139 3.861 23 F -0.135 7.135 24 C -0.189 4.189 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -14.550 -16.174 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.195 4.195 3 C 0.009 3.991 4 N -0.317 5.317 5 C 0.099 3.901 6 C -0.571 4.571 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.533 5.533 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.295 3.705 15 O -0.388 6.388 16 C -0.038 4.038 17 O -0.193 6.193 18 C 0.119 3.881 19 C -0.242 4.242 20 C -0.068 4.068 21 C -0.217 4.217 22 C 0.119 3.881 23 F -0.114 7.114 24 C -0.209 4.209 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.733 -14.330 -15.311 21.042 hybrid contribution -0.422 -0.328 0.603 0.807 sum 1.311 -14.658 -14.707 20.806 Atomic orbital electron populations 1.23876 0.95809 1.02014 0.99723 1.23432 0.96543 0.98867 1.00665 1.20686 0.93333 0.95810 0.89298 1.47825 1.09978 1.60425 1.13445 1.19708 0.95054 0.95235 0.80063 1.21305 1.41557 0.91010 1.03263 0.90649 1.24842 0.95198 0.94723 0.98108 1.69893 1.47511 1.06603 1.29318 0.86867 0.79899 0.79682 0.83369 1.19817 1.20992 1.19005 1.19696 0.82768 0.79415 0.88650 1.90737 1.52069 1.54711 1.41256 1.22749 0.81621 1.00503 0.98895 1.86209 1.26775 1.74838 1.31474 1.18726 0.91843 0.91699 0.85812 1.21385 1.01498 1.08076 0.93243 1.20765 0.93774 0.94477 0.97736 1.21019 0.95607 1.07369 0.97696 1.17268 0.79043 0.97552 0.94219 1.91514 1.35148 1.87623 1.97108 1.20295 0.94508 1.06546 0.99544 0.88587 0.88060 0.87668 0.88667 0.90603 0.94831 0.94407 0.92469 0.89262 0.88982 0.84606 0.84643 0.84706 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 14.32 29.01 0.42 -1.49 16 2 C -0.18 -2.08 9.76 -36.03 -0.35 -2.44 16 3 C 0.13 1.87 5.66 -5.19 -0.03 1.84 16 4 N -0.58 -11.34 2.44 -176.43 -0.43 -11.77 16 5 C 0.22 5.20 4.23 -5.20 -0.02 5.18 16 6 C -0.53 -14.96 9.94 -34.44 -0.34 -15.30 16 7 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 9 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 10 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 14 C 0.51 10.12 7.75 -10.98 -0.09 10.04 16 15 O -0.51 -12.82 16.08 -14.35 -0.23 -13.05 16 16 C 0.04 0.58 3.77 36.01 0.14 0.71 16 17 O -0.28 -4.50 9.67 -39.32 -0.38 -4.88 16 18 C 0.17 2.16 6.69 -39.22 -0.26 1.90 16 19 C -0.22 -2.23 9.04 -39.42 -0.36 -2.59 16 20 C -0.05 -0.41 10.04 -39.62 -0.40 -0.81 16 21 C -0.20 -1.82 10.02 -39.49 -0.40 -2.22 16 22 C 0.14 1.57 7.30 -39.44 -0.29 1.28 16 23 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 24 C -0.19 -2.39 9.97 -39.37 -0.39 -2.78 16 25 H 0.10 0.88 8.06 -52.49 -0.42 0.45 16 26 H 0.10 1.07 7.84 -52.49 -0.41 0.66 16 27 H 0.11 1.14 7.85 -52.49 -0.41 0.73 16 28 H 0.10 1.42 7.72 -51.93 -0.40 1.01 16 29 H 0.08 0.84 6.43 -51.93 -0.33 0.51 16 30 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 31 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 32 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.09 0.96 7.33 -51.93 -0.38 0.58 16 34 H 0.09 1.08 6.93 -51.93 -0.36 0.72 16 35 H 0.14 1.07 6.30 -52.49 -0.33 0.74 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.15 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -34.41 334.56 -6.96 -41.37 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.64 Total: -0.61 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.47 Total: -4.66 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.34 Total: -38.25 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.61 Total: -17.93 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.41 -6.96 -41.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359400786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.649 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds