Wall clock time and date at job start Tue Mar 31 2020 06:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99813 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00047 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47231 * 89.99796 * 10 8 6 12 12 H 1.48499 * 109.47342 * 210.00322 * 10 8 6 13 13 H 1.48505 * 109.46935 * 330.00024 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 O 1.42899 * 109.46876 * 179.72354 * 16 14 4 18 18 C 1.35897 * 116.99793 * 179.97438 * 17 16 14 19 19 C 1.38778 * 120.04357 * 359.72176 * 18 17 16 20 20 C 1.38131 * 119.99403 * 179.74934 * 19 18 17 21 21 C 1.38250 * 120.07826 * 0.52819 * 20 19 18 22 22 C 1.38474 * 120.08843 * 359.74686 * 21 20 19 23 23 F 1.35100 * 119.99736 * 180.02562 * 22 21 20 24 24 C 1.38382 * 120.00251 * 359.97438 * 22 21 20 25 25 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 29 29 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 30 30 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 31 31 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 32 32 H 0.97004 * 119.99796 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 35 35 H 1.07997 * 119.99649 * 0.02562 * 19 18 17 36 36 H 1.07998 * 119.96155 * 180.27265 * 20 19 18 37 37 H 1.08002 * 119.95596 * 179.76838 * 21 20 19 38 38 H 1.08003 * 120.03986 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 2.7680 5.3571 3.6569 10 14 1.7260 3.2129 5.0685 11 1 2.7827 2.7226 5.9895 12 1 0.8496 4.1727 5.7868 13 1 0.9149 2.0648 4.5898 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 8 6.0608 -0.0995 -0.2570 18 6 6.6236 -0.6183 -1.3800 19 6 5.8781 -0.7233 -2.5458 20 6 6.4527 -1.2460 -3.6881 21 6 7.7668 -1.6751 -3.6686 22 6 8.5119 -1.5771 -2.5056 23 9 9.7961 -1.9965 -2.4888 24 6 7.9416 -1.0487 -1.3609 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0990 1.3603 3.2260 32 1 2.5391 5.8658 4.4505 33 1 4.0730 -0.5248 -0.6265 34 1 4.6113 1.1022 -1.1075 35 1 4.8503 -0.3922 -2.5612 36 1 5.8734 -1.3234 -4.5963 37 1 8.2129 -2.0869 -4.5619 38 1 8.5224 -0.9716 -0.4535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359400786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:15 Heat of formation + Delta-G solvation = -81.518873 kcal Electronic energy + Delta-G solvation = -22616.639453 eV Core-core repulsion = 18953.343690 eV Total energy + Delta-G solvation = -3663.295762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.98284 -41.53374 -40.43835 -38.21259 -37.28222 -35.08141 -33.78402 -32.21282 -31.20113 -30.63426 -28.73408 -26.92302 -24.58188 -23.93660 -23.09954 -21.22673 -20.11252 -19.73711 -19.11350 -18.20861 -17.66836 -17.43098 -17.32242 -16.92596 -16.72024 -16.63519 -16.17711 -15.82658 -15.53760 -15.05986 -14.71953 -14.58145 -14.34017 -14.13204 -13.69787 -13.55470 -13.36809 -13.08766 -12.91113 -12.80294 -12.53195 -12.29975 -12.15179 -12.02125 -11.94523 -11.74768 -10.84764 -10.77747 -10.31510 -9.93429 -9.54810 -9.35846 -8.35285 -6.40639 0.09525 0.26281 1.24394 1.32979 1.36341 1.44217 1.54685 1.69030 2.29760 2.56642 2.58184 2.99298 3.33501 3.43669 3.75984 3.86719 4.00276 4.01818 4.09627 4.11200 4.24852 4.28029 4.40716 4.43597 4.74446 4.85131 4.90247 5.00031 5.08032 5.09242 5.21106 5.32484 5.42390 5.45766 5.68927 5.74552 5.92295 6.18080 6.25238 6.54419 6.61221 7.16408 7.29092 8.81444 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.003536 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.242419 B = 7916.933341 C = 8813.006051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.186 4.186 3 C 0.125 3.875 4 N -0.588 5.588 5 C 0.228 3.772 6 C -0.538 4.538 7 H 0.032 0.968 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.944 3.056 11 H -0.279 1.279 12 H -0.274 1.274 13 H -0.236 1.236 14 C 0.498 3.502 15 O -0.581 6.581 16 C 0.053 3.947 17 O -0.320 6.320 18 C 0.140 3.860 19 C -0.216 4.216 20 C -0.039 4.039 21 C -0.188 4.188 22 C 0.122 3.878 23 F -0.143 7.143 24 C -0.214 4.214 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.016 0.984 32 H 0.269 0.731 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.164 0.836 36 H 0.178 0.822 37 H 0.162 0.838 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 -16.870 -18.744 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.004 3.996 4 N -0.319 5.319 5 C 0.106 3.894 6 C -0.577 4.577 7 H 0.050 0.950 8 C -0.186 4.186 9 N -0.584 5.584 10 Si 0.767 3.233 11 H -0.205 1.205 12 H -0.199 1.199 13 H -0.159 1.159 14 C 0.286 3.714 15 O -0.461 6.461 16 C -0.024 4.024 17 O -0.233 6.233 18 C 0.095 3.905 19 C -0.234 4.234 20 C -0.056 4.056 21 C -0.207 4.207 22 C 0.103 3.897 23 F -0.122 7.122 24 C -0.234 4.234 25 H 0.136 0.864 26 H 0.118 0.882 27 H 0.139 0.861 28 H 0.101 0.899 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.181 0.819 36 H 0.196 0.804 37 H 0.179 0.821 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.557 -16.671 -17.952 24.505 hybrid contribution 0.319 0.427 1.267 1.374 sum -0.239 -16.245 -16.685 23.288 Atomic orbital electron populations 1.24099 0.95559 1.03029 0.97561 1.23298 0.96783 0.97951 1.02507 1.21010 0.92884 0.97068 0.88646 1.47881 1.11075 1.59513 1.13415 1.19327 0.95676 0.92111 0.82269 1.21558 1.40711 0.93397 1.01995 0.94953 1.25820 0.95935 0.95348 1.01456 1.70044 1.49291 1.08480 1.30536 0.85767 0.79071 0.79495 0.78961 1.20485 1.19893 1.15885 1.20772 0.82055 0.78354 0.90252 1.90695 1.53856 1.57537 1.44005 1.22717 0.81816 1.02667 0.95206 1.86142 1.27646 1.75928 1.33630 1.18913 0.92165 0.93226 0.86230 1.21731 1.02424 1.07005 0.92260 1.21264 0.93422 0.92370 0.98559 1.21420 0.95890 1.05959 0.97432 1.17475 0.79091 0.98346 0.94777 1.91489 1.35738 1.87800 1.97174 1.20354 0.95094 1.08103 0.99806 0.86426 0.88240 0.86146 0.89886 0.87169 0.92830 0.96545 0.92237 0.85018 0.86174 0.81870 0.80429 0.82067 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 14.32 67.77 0.97 -1.96 16 2 C -0.19 -3.76 9.76 25.64 0.25 -3.51 16 3 C 0.13 3.26 5.66 85.63 0.48 3.74 16 4 N -0.59 -22.57 2.44 -830.49 -2.03 -24.59 16 5 C 0.23 10.88 4.23 85.63 0.36 11.25 16 6 C -0.54 -31.26 9.94 25.60 0.25 -31.00 16 7 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 8 C 0.01 0.75 5.47 84.66 0.46 1.21 16 9 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 10 Si 0.94 44.18 27.47 68.60 1.88 46.06 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 14 C 0.50 19.90 7.75 87.66 0.68 20.58 16 15 O -0.58 -30.47 16.08 16.00 0.26 -30.21 16 16 C 0.05 1.41 3.77 71.24 0.27 1.68 16 17 O -0.32 -10.28 9.67 -73.35 -0.71 -10.99 16 18 C 0.14 3.53 6.69 22.50 0.15 3.68 16 19 C -0.22 -3.52 9.04 22.37 0.20 -3.32 16 20 C -0.04 -0.47 10.04 22.25 0.22 -0.24 16 21 C -0.19 -2.87 10.02 22.33 0.22 -2.64 16 22 C 0.12 2.69 7.30 22.36 0.16 2.85 16 23 F -0.14 -3.36 17.27 44.97 0.78 -2.59 16 24 C -0.21 -5.57 9.97 22.41 0.22 -5.35 16 25 H 0.12 1.62 8.06 -2.91 -0.02 1.60 16 26 H 0.10 1.81 7.84 -2.91 -0.02 1.78 16 27 H 0.12 2.09 7.85 -2.91 -0.02 2.07 16 28 H 0.08 2.36 7.72 -2.39 -0.02 2.34 16 29 H 0.11 2.05 6.43 -2.39 -0.02 2.04 16 30 H 0.05 2.34 7.13 -2.39 -0.02 2.32 16 31 H 0.02 0.86 6.85 -2.38 -0.02 0.84 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.13 2.30 7.33 -2.38 -0.02 2.28 16 34 H 0.12 2.45 6.93 -2.39 -0.02 2.43 16 35 H 0.16 1.69 6.30 -2.91 -0.02 1.67 16 36 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -81.97 334.56 6.41 -75.56 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.01 Total: 8.90 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 4.92 Total: -3.04 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -1.73 Total: -83.70 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.45 Total: -41.20 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -81.97 6.41 -75.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359400786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.959 kcal (2) G-P(sol) polarization free energy of solvation -81.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds