Wall clock time and date at job start Tue Mar 31 2020 07:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.80632 * 2 1 4 4 O 1.43774 * 110.74775 * 123.31473 * 2 1 3 5 5 C 1.36134 * 109.24203 * 90.57125 * 4 2 1 6 6 C 1.39245 * 129.86509 * 198.43094 * 5 4 2 7 7 C 1.38148 * 120.22461 * 181.02842 * 6 5 4 8 8 F 1.35101 * 119.85516 * 179.97438 * 7 6 5 9 9 C 1.38516 * 120.29207 * 359.93170 * 7 6 5 10 10 C 1.38314 * 119.74532 * 359.85471 * 9 7 6 11 11 C 1.37763 * 120.00481 * 0.02946 * 10 9 7 12 12 C 1.51652 * 132.13448 * 180.35515 * 11 10 9 13 13 H 1.08995 * 110.94185 * 282.75941 * 12 11 10 14 14 N 1.46499 * 110.93961 * 46.40900 * 12 11 10 15 15 C 1.34777 * 120.00065 * 273.54914 * 14 12 11 16 16 O 1.21283 * 120.00122 * 359.97438 * 15 14 12 17 17 C 1.50701 * 120.00078 * 180.02562 * 15 14 12 18 18 C 1.53004 * 109.47211 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47211 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27574 * 19 18 17 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 18 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 18 24 24 H 1.48504 * 109.47209 * 89.99886 * 23 21 19 25 25 H 1.48501 * 109.47358 * 209.99377 * 23 21 19 26 26 H 1.48496 * 109.47341 * 329.99989 * 23 21 19 27 27 H 1.09006 * 109.46840 * 183.31532 * 1 2 3 28 28 H 1.08993 * 109.47442 * 303.31765 * 1 2 3 29 29 H 1.09003 * 109.47007 * 63.32307 * 1 2 3 30 30 H 1.08002 * 119.89153 * 0.98137 * 6 5 4 31 31 H 1.08005 * 120.13033 * 179.83411 * 9 7 6 32 32 H 1.07994 * 119.99741 * 179.97438 * 10 9 7 33 33 H 0.97000 * 120.00380 * 93.54110 * 14 12 11 34 34 H 1.09000 * 109.47827 * 59.99362 * 17 15 14 35 35 H 1.09007 * 109.47098 * 299.99085 * 17 15 14 36 36 H 1.09000 * 109.47211 * 59.99027 * 18 17 15 37 37 H 1.09007 * 109.46376 * 299.99569 * 18 17 15 38 38 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 8 2.0393 -0.7385 1.1236 5 6 2.2103 -2.0404 0.7645 6 6 2.3424 -3.1757 1.5598 7 6 2.5302 -4.4145 0.9779 8 9 2.6580 -5.5109 1.7568 9 6 2.5873 -4.5374 -0.4006 10 6 2.4523 -3.4139 -1.1959 11 6 2.2625 -2.1785 -0.6166 12 6 2.0782 -0.7946 -1.2089 13 1 3.0305 -0.3850 -1.5455 14 7 1.1053 -0.8191 -2.3039 15 6 1.5077 -1.1116 -3.5565 16 8 2.6754 -1.3541 -3.7772 17 6 0.5070 -1.1362 -4.6830 18 6 1.2189 -1.4917 -5.9899 19 6 0.2181 -1.5169 -7.1163 20 1 -0.8218 -1.3014 -6.9196 21 6 0.6289 -1.8213 -8.3967 22 7 1.8951 -2.0841 -8.6361 23 14 -0.6130 -1.8602 -9.7916 24 1 -0.7069 -0.5126 -10.4085 25 1 -0.1771 -2.8438 -10.8152 26 1 -1.9422 -2.2549 -9.2601 27 1 -0.3633 -1.0260 0.0594 28 1 -0.3634 0.5644 0.8587 29 1 -0.3633 0.4614 -0.9183 30 1 2.2985 -3.0874 2.6354 31 1 2.7370 -5.5068 -0.8527 32 1 2.4966 -3.5051 -2.2711 33 1 0.1715 -0.6249 -2.1275 34 1 0.0426 -0.1547 -4.7781 35 1 -0.2595 -1.8819 -4.4719 36 1 1.6837 -2.4731 -5.8951 37 1 1.9851 -0.7456 -6.2008 38 1 2.1840 -2.2986 -9.5368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360633519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:30 Heat of formation + Delta-G solvation = -91.009453 kcal Electronic energy + Delta-G solvation = -22996.273165 eV Core-core repulsion = 19332.565861 eV Total energy + Delta-G solvation = -3663.707305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.11233 -41.75585 -39.04415 -37.54642 -35.09882 -33.51060 -31.70618 -30.99780 -30.73957 -30.08986 -26.91763 -25.54479 -23.35787 -22.38979 -21.96001 -20.84623 -19.85006 -18.13106 -17.41068 -17.00805 -16.81895 -16.41414 -15.81688 -15.72404 -15.41902 -15.04154 -14.72776 -14.49232 -14.23027 -13.81642 -13.56833 -13.16862 -13.08089 -12.73711 -12.68941 -12.31796 -12.22674 -12.06880 -11.56910 -11.26145 -11.21497 -10.99855 -10.96209 -10.63293 -10.02282 -9.73771 -9.31090 -9.13728 -9.04438 -9.03040 -8.42712 -8.36074 -6.00088 -4.04798 0.87268 1.04553 2.75116 3.07265 3.15939 3.30673 3.37216 3.39398 3.53893 3.98941 4.21446 4.26652 4.44143 4.49657 4.64192 4.81169 4.83689 4.89161 5.15510 5.23135 5.35132 5.38513 5.49558 5.59763 5.75347 5.79258 5.85160 6.05869 6.13680 6.15263 6.20595 6.29839 6.51312 6.80513 6.84817 7.68091 7.70475 7.79869 8.01859 8.33177 8.62807 9.03411 9.59209 11.10754 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.003442 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.730177 B = 8132.246933 C = 8963.379985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 H 0.127 0.873 4 O -0.291 6.291 5 C 0.136 3.864 6 C -0.181 4.181 7 C 0.134 3.866 8 F -0.135 7.135 9 C -0.181 4.181 10 C -0.020 4.020 11 C -0.189 4.189 12 C 0.164 3.836 13 H 0.115 0.885 14 N -0.734 5.734 15 C 0.511 3.489 16 O -0.527 6.527 17 C -0.130 4.130 18 C 0.038 3.962 19 C -0.529 4.529 20 H 0.056 0.944 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.401 0.599 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 1.698 21.282 21.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.018 3.982 3 H 0.145 0.855 4 O -0.205 6.205 5 C 0.090 3.910 6 C -0.201 4.201 7 C 0.115 3.885 8 F -0.114 7.114 9 C -0.200 4.200 10 C -0.038 4.038 11 C -0.191 4.191 12 C 0.058 3.942 13 H 0.133 0.867 14 N -0.391 5.391 15 C 0.300 3.700 16 O -0.402 6.402 17 C -0.170 4.170 18 C 0.000 4.000 19 C -0.567 4.567 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.239 0.761 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.529 1.558 21.187 21.300 hybrid contribution -1.032 -0.160 -0.673 1.242 sum -2.561 1.398 20.514 20.721 Atomic orbital electron populations 1.22259 0.93847 1.03849 1.03676 1.23682 0.95333 0.96573 0.82662 0.85493 1.86931 1.79811 1.16132 1.37610 1.19021 0.95046 0.84888 0.92089 1.19920 1.10825 0.88637 1.00695 1.17135 1.00726 0.82251 0.88417 1.91513 1.93211 1.51796 1.74836 1.21104 1.06934 1.00576 0.91364 1.20329 0.92910 0.89571 1.00983 1.21166 1.07870 0.96516 0.93532 1.20926 0.95126 0.90842 0.87320 0.86737 1.46395 1.11328 1.74206 1.07199 1.21687 0.90720 0.74533 0.83084 1.90688 1.19173 1.46877 1.83430 1.21896 0.97495 1.02755 0.94854 1.18901 0.95311 0.97969 0.87813 1.21205 0.94556 1.48056 0.92871 0.92609 1.25014 0.95163 0.95267 0.98853 1.69989 1.14785 1.46965 1.21025 0.86597 0.81489 0.77820 0.82077 1.20662 1.21202 1.19880 0.91251 0.90517 0.89868 0.84269 0.84042 0.84125 0.76144 0.90100 0.90126 0.95800 0.95784 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 8.52 37.16 0.32 -0.96 16 2 C 0.07 0.66 4.28 -25.83 -0.11 0.55 16 3 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 4 O -0.29 -3.23 10.82 -20.17 -0.22 -3.45 16 5 C 0.14 1.62 6.90 -38.96 -0.27 1.36 16 6 C -0.18 -2.05 10.04 -39.24 -0.39 -2.44 16 7 C 0.13 1.58 7.28 -39.51 -0.29 1.29 16 8 F -0.14 -1.59 17.26 2.25 0.04 -1.55 16 9 C -0.18 -2.18 10.04 -39.45 -0.40 -2.57 16 10 C -0.02 -0.26 10.03 -39.73 -0.40 -0.66 16 11 C -0.19 -2.44 5.92 -104.08 -0.62 -3.05 16 12 C 0.16 1.97 3.25 -67.72 -0.22 1.75 16 13 H 0.11 1.53 7.72 -51.93 -0.40 1.13 16 14 N -0.73 -9.21 5.04 -53.60 -0.27 -9.48 16 15 C 0.51 8.93 7.78 -10.98 -0.09 8.85 16 16 O -0.53 -11.38 15.35 5.55 0.09 -11.29 16 17 C -0.13 -2.46 5.64 -27.88 -0.16 -2.62 16 18 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 19 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 20 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 23 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.49 6.59 -51.93 -0.34 0.15 16 30 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.14 2.13 7.65 -52.49 -0.40 1.73 16 33 H 0.40 3.89 5.86 -40.82 -0.24 3.65 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -32.82 327.97 -7.58 -40.40 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.72 Total: 1.32 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -3.15 Total: -10.97 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.47 Total: -35.64 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.13 Total: -14.74 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.82 -7.58 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360633519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.609 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds