Wall clock time and date at job start Tue Mar 31 2020 07:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.80632 * 2 1 4 4 O 1.43774 * 110.74775 * 123.31473 * 2 1 3 5 5 C 1.36134 * 109.24203 * 90.57125 * 4 2 1 6 6 C 1.39245 * 129.86509 * 198.43094 * 5 4 2 7 7 C 1.38148 * 120.22461 * 181.02842 * 6 5 4 8 8 F 1.35101 * 119.85516 * 179.97438 * 7 6 5 9 9 C 1.38516 * 120.29207 * 359.93170 * 7 6 5 10 10 C 1.38314 * 119.74532 * 359.85471 * 9 7 6 11 11 C 1.37763 * 120.00481 * 0.02946 * 10 9 7 12 12 C 1.51652 * 132.13448 * 180.35515 * 11 10 9 13 13 H 1.08995 * 110.94185 * 282.75941 * 12 11 10 14 14 N 1.46499 * 110.93961 * 46.40900 * 12 11 10 15 15 C 1.34777 * 120.00065 * 273.54914 * 14 12 11 16 16 O 1.21283 * 120.00122 * 359.97438 * 15 14 12 17 17 C 1.50701 * 120.00078 * 180.02562 * 15 14 12 18 18 C 1.53004 * 109.47211 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47211 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27574 * 19 18 17 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 18 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 18 24 24 H 1.48504 * 109.47209 * 89.99886 * 23 21 19 25 25 H 1.48501 * 109.47358 * 209.99377 * 23 21 19 26 26 H 1.48496 * 109.47341 * 329.99989 * 23 21 19 27 27 H 1.09006 * 109.46840 * 183.31532 * 1 2 3 28 28 H 1.08993 * 109.47442 * 303.31765 * 1 2 3 29 29 H 1.09003 * 109.47007 * 63.32307 * 1 2 3 30 30 H 1.08002 * 119.89153 * 0.98137 * 6 5 4 31 31 H 1.08005 * 120.13033 * 179.83411 * 9 7 6 32 32 H 1.07994 * 119.99741 * 179.97438 * 10 9 7 33 33 H 0.97000 * 120.00380 * 93.54110 * 14 12 11 34 34 H 1.09000 * 109.47827 * 59.99362 * 17 15 14 35 35 H 1.09007 * 109.47098 * 299.99085 * 17 15 14 36 36 H 1.09000 * 109.47211 * 59.99027 * 18 17 15 37 37 H 1.09007 * 109.46376 * 299.99569 * 18 17 15 38 38 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 8 2.0393 -0.7385 1.1236 5 6 2.2103 -2.0404 0.7645 6 6 2.3424 -3.1757 1.5598 7 6 2.5302 -4.4145 0.9779 8 9 2.6580 -5.5109 1.7568 9 6 2.5873 -4.5374 -0.4006 10 6 2.4523 -3.4139 -1.1959 11 6 2.2625 -2.1785 -0.6166 12 6 2.0782 -0.7946 -1.2089 13 1 3.0305 -0.3850 -1.5455 14 7 1.1053 -0.8191 -2.3039 15 6 1.5077 -1.1116 -3.5565 16 8 2.6754 -1.3541 -3.7772 17 6 0.5070 -1.1362 -4.6830 18 6 1.2189 -1.4917 -5.9899 19 6 0.2181 -1.5169 -7.1163 20 1 -0.8218 -1.3014 -6.9196 21 6 0.6289 -1.8213 -8.3967 22 7 1.8951 -2.0841 -8.6361 23 14 -0.6130 -1.8602 -9.7916 24 1 -0.7069 -0.5126 -10.4085 25 1 -0.1771 -2.8438 -10.8152 26 1 -1.9422 -2.2549 -9.2601 27 1 -0.3633 -1.0260 0.0594 28 1 -0.3634 0.5644 0.8587 29 1 -0.3633 0.4614 -0.9183 30 1 2.2985 -3.0874 2.6354 31 1 2.7370 -5.5068 -0.8527 32 1 2.4966 -3.5051 -2.2711 33 1 0.1715 -0.6249 -2.1275 34 1 0.0426 -0.1547 -4.7781 35 1 -0.2595 -1.8819 -4.4719 36 1 1.6837 -2.4731 -5.8951 37 1 1.9851 -0.7456 -6.2008 38 1 2.1840 -2.2986 -9.5368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360633519.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:30 Heat of formation + Delta-G solvation = -112.205873 kcal Electronic energy + Delta-G solvation = -22997.192311 eV Core-core repulsion = 19332.565861 eV Total energy + Delta-G solvation = -3664.626450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.05132 -42.67821 -40.43715 -38.46425 -36.27090 -35.52657 -33.21738 -32.23735 -31.68085 -31.15625 -28.14089 -27.12856 -24.30109 -24.00386 -22.87773 -22.07168 -21.23734 -19.15264 -18.76629 -18.26176 -17.76585 -17.58609 -17.31334 -16.69209 -16.57012 -16.43545 -16.21195 -15.71756 -15.40546 -14.90609 -14.68324 -14.29994 -14.13650 -14.09406 -13.96151 -13.57162 -13.33674 -13.21550 -12.95515 -12.80609 -12.49016 -12.31388 -12.19544 -11.90371 -11.84788 -11.62258 -11.28981 -10.79419 -10.55763 -10.23971 -10.02379 -9.36949 -8.16950 -6.30561 -0.09752 0.08832 1.43385 1.45453 1.56304 1.67167 1.88713 2.07272 2.42575 2.50350 3.11911 3.16582 3.31890 3.34215 3.67555 3.78978 3.92817 4.00418 4.05038 4.18322 4.35614 4.44120 4.56351 4.57836 4.69247 4.79300 4.85972 4.95209 5.05835 5.08470 5.16509 5.23122 5.34938 5.43772 5.52395 5.65531 5.87153 5.94029 6.19065 6.51732 6.88222 7.29745 7.39932 8.95482 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.003442 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.730177 B = 8132.246933 C = 8963.379985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.080 3.920 3 H 0.154 0.846 4 O -0.293 6.293 5 C 0.138 3.862 6 C -0.176 4.176 7 C 0.133 3.867 8 F -0.134 7.134 9 C -0.182 4.182 10 C -0.037 4.037 11 C -0.203 4.203 12 C 0.158 3.842 13 H 0.097 0.903 14 N -0.707 5.707 15 C 0.516 3.484 16 O -0.577 6.577 17 C -0.120 4.120 18 C 0.042 3.958 19 C -0.542 4.542 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.255 1.255 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.161 0.839 31 H 0.152 0.848 32 H 0.116 0.884 33 H 0.418 0.582 34 H 0.108 0.892 35 H 0.103 0.897 36 H -0.017 1.017 37 H -0.016 1.016 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 2.728 22.853 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.025 3.975 3 H 0.171 0.829 4 O -0.207 6.207 5 C 0.092 3.908 6 C -0.195 4.195 7 C 0.114 3.886 8 F -0.112 7.112 9 C -0.201 4.201 10 C -0.055 4.055 11 C -0.205 4.205 12 C 0.052 3.948 13 H 0.115 0.885 14 N -0.364 5.364 15 C 0.305 3.695 16 O -0.456 6.456 17 C -0.159 4.159 18 C 0.005 3.995 19 C -0.580 4.580 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.577 5.577 23 Si 0.795 3.205 24 H -0.197 1.197 25 H -0.214 1.214 26 H -0.179 1.179 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.179 0.821 31 H 0.170 0.830 32 H 0.134 0.866 33 H 0.260 0.740 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.158 2.611 22.815 23.337 hybrid contribution -0.188 -0.485 -1.090 1.208 sum -4.346 2.125 21.725 22.258 Atomic orbital electron populations 1.22294 0.91968 1.03868 1.05346 1.23911 0.96757 0.96750 0.80120 0.82892 1.86936 1.79928 1.15568 1.38221 1.19041 0.94798 0.85525 0.91480 1.20142 1.09511 0.88080 1.01791 1.17139 1.00708 0.82580 0.88180 1.91518 1.93202 1.51804 1.74688 1.21194 1.06558 1.00645 0.91712 1.20203 0.94661 0.90727 0.99948 1.21265 1.08349 0.96474 0.94417 1.21056 0.94465 0.91252 0.87993 0.88526 1.46006 1.12466 1.72145 1.05760 1.21364 0.89521 0.74303 0.84359 1.90680 1.21066 1.49449 1.84396 1.21655 0.97447 1.04779 0.92068 1.18684 0.94651 0.94581 0.91601 1.21722 0.95634 1.47217 0.93433 0.90598 1.26093 0.97190 0.94758 1.02253 1.70169 1.17414 1.48410 1.21738 0.85366 0.79145 0.77985 0.78023 1.19743 1.21374 1.17919 0.92084 0.88696 0.88300 0.82103 0.82990 0.86606 0.74023 0.87383 0.87866 0.99888 0.99780 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.52 71.98 0.61 -1.29 16 2 C 0.08 1.23 4.28 31.18 0.13 1.37 16 3 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 4 O -0.29 -5.77 10.82 -95.07 -1.03 -6.80 16 5 C 0.14 3.09 6.90 22.67 0.16 3.25 16 6 C -0.18 -3.66 10.04 22.49 0.23 -3.43 16 7 C 0.13 3.00 7.28 22.31 0.16 3.16 16 8 F -0.13 -2.96 17.26 44.97 0.78 -2.19 16 9 C -0.18 -4.40 10.04 22.35 0.22 -4.18 16 10 C -0.04 -1.03 10.03 22.18 0.22 -0.81 16 11 C -0.20 -5.19 5.92 -19.51 -0.12 -5.31 16 12 C 0.16 3.67 3.25 45.13 0.15 3.82 16 13 H 0.10 2.63 7.72 -2.39 -0.02 2.61 16 14 N -0.71 -16.93 5.04 -441.88 -2.23 -19.16 16 15 C 0.52 18.25 7.78 87.66 0.68 18.93 16 16 O -0.58 -26.32 15.35 -3.04 -0.05 -26.37 16 17 C -0.12 -4.48 5.64 29.85 0.17 -4.31 16 18 C 0.04 2.28 4.26 29.85 0.13 2.41 16 19 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 20 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 21 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 22 N -0.94 -58.66 13.29 21.45 0.28 -58.37 16 23 Si 0.97 43.54 29.54 68.60 2.03 45.56 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 H 0.06 0.79 8.07 -2.38 -0.02 0.77 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.76 6.59 -2.39 -0.02 0.74 16 30 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 31 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.12 3.81 7.65 -2.91 -0.02 3.78 16 33 H 0.42 7.02 5.86 -92.71 -0.54 6.47 16 34 H 0.11 3.45 8.14 -2.39 -0.02 3.44 16 35 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 36 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 37 H -0.02 -0.99 8.10 -2.38 -0.02 -1.01 16 38 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -74.68 327.97 3.77 -70.90 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.55 Total: 12.48 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 3.44 Total: -16.05 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.94 Total: -77.53 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.08 Total: -33.17 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -74.68 3.77 -70.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360633519.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.301 kcal (2) G-P(sol) polarization free energy of solvation -74.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds