Wall clock time and date at job start Tue Mar 31 2020 07:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.80847 * 2 1 4 4 O 1.43762 * 110.74910 * 123.31523 * 2 1 3 5 5 C 1.36130 * 109.29162 * 145.88972 * 4 2 1 6 6 C 1.39250 * 129.85545 * 161.42758 * 5 4 2 7 7 C 1.38143 * 120.22494 * 179.58341 * 6 5 4 8 8 F 1.35108 * 119.85074 * 180.02562 * 7 6 5 9 9 C 1.38509 * 120.29983 * 0.02858 * 7 6 5 10 10 C 1.38314 * 119.73974 * 0.16759 * 9 7 6 11 11 C 1.37760 * 120.00374 * 359.97438 * 10 9 7 12 12 C 1.51658 * 132.13877 * 179.60158 * 11 10 9 13 13 H 1.09002 * 110.94429 * 77.58403 * 12 11 10 14 14 N 1.46504 * 110.97615 * 313.90243 * 12 11 10 15 15 C 1.34773 * 120.00127 * 89.44446 * 14 12 11 16 16 O 1.21277 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.50695 * 120.00102 * 180.02562 * 15 14 12 18 18 C 1.52994 * 109.47484 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.47458 * 179.97438 * 18 17 15 20 20 H 1.07993 * 119.99977 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99683 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00437 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99420 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47311 * 59.99998 * 23 21 19 25 25 H 1.48503 * 109.46728 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47042 * 299.99750 * 23 21 19 27 27 H 1.09003 * 109.47094 * 183.30720 * 1 2 3 28 28 H 1.08998 * 109.47280 * 303.30704 * 1 2 3 29 29 H 1.09000 * 109.47195 * 63.31106 * 1 2 3 30 30 H 1.08007 * 119.88441 * 359.57143 * 6 5 4 31 31 H 1.08000 * 120.13613 * 180.15188 * 9 7 6 32 32 H 1.07992 * 119.99666 * 179.97438 * 10 9 7 33 33 H 0.97000 * 119.99586 * 269.44964 * 14 12 11 34 34 H 1.09004 * 109.47165 * 299.99911 * 17 15 14 35 35 H 1.09006 * 109.47596 * 59.99524 * 17 15 14 36 36 H 1.09010 * 109.47084 * 299.99762 * 18 17 15 37 37 H 1.09003 * 109.47657 * 59.99141 * 18 17 15 38 38 H 0.96993 * 120.00111 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 8 2.0393 -0.7384 1.1234 5 6 3.1934 -1.3645 0.7642 6 6 4.2082 -1.8905 1.5596 7 6 5.3030 -2.4996 0.9775 8 9 6.2830 -3.0078 1.7564 9 6 5.4006 -2.5916 -0.4011 10 6 4.3978 -2.0673 -1.1965 11 6 3.3071 -1.4572 -0.6170 12 6 2.0778 -0.7951 -1.2091 13 1 1.3571 -1.5408 -1.5447 14 7 2.4438 0.1060 -2.3047 15 6 2.5151 -0.3617 -3.5666 16 8 2.2758 -1.5284 -3.7953 17 6 2.8921 0.5651 -4.6935 18 6 2.8989 -0.2113 -6.0118 19 6 3.2753 0.7157 -7.1389 20 1 3.4888 1.7545 -6.9352 21 6 3.3481 0.2371 -8.4299 22 7 3.0886 -1.0281 -8.6779 23 14 3.8154 1.3860 -9.8268 24 1 5.1672 1.9468 -9.5753 25 1 3.8218 0.6324 -11.1064 26 1 2.8280 2.4921 -9.9093 27 1 -0.3633 -1.0260 0.0593 28 1 -0.3634 0.5643 0.8588 29 1 -0.3633 0.4616 -0.9182 30 1 4.1392 -1.8219 2.6352 31 1 6.2565 -3.0705 -0.8533 32 1 4.4699 -2.1364 -2.2718 33 1 2.6349 1.0393 -2.1218 34 1 2.1673 1.3770 -4.7542 35 1 3.8843 0.9769 -4.5089 36 1 3.6234 -1.0235 -5.9515 37 1 1.9065 -0.6228 -6.1963 38 1 3.1395 -1.3646 -9.5862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360633521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:39 Heat of formation + Delta-G solvation = -97.051741 kcal Electronic energy + Delta-G solvation = -22822.594710 eV Core-core repulsion = 19158.625392 eV Total energy + Delta-G solvation = -3663.969318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.12370 -41.65030 -39.05055 -37.55740 -34.94970 -33.50858 -32.04160 -31.14256 -30.70798 -30.11961 -26.65488 -25.34712 -23.14740 -22.36262 -22.10460 -21.16077 -19.79845 -18.31154 -17.42047 -16.95730 -16.66385 -16.42419 -15.80492 -15.72475 -15.50503 -14.90148 -14.74995 -14.49318 -14.25257 -13.88655 -13.38232 -13.22462 -13.14869 -12.80671 -12.52103 -12.31048 -12.20346 -12.12623 -11.69334 -11.27877 -11.21560 -10.97250 -10.94405 -10.65366 -10.01847 -9.74234 -9.32513 -9.15120 -9.05770 -9.04069 -8.44089 -8.35809 -5.99930 -4.04722 0.85703 1.03032 2.69528 3.06310 3.14655 3.31870 3.36999 3.38288 3.52305 4.00753 4.15771 4.27525 4.44196 4.57379 4.62480 4.81418 4.83557 4.87766 5.24343 5.27508 5.35139 5.38750 5.47822 5.65044 5.77678 5.77989 5.83907 6.03484 6.13772 6.15202 6.18446 6.29194 6.50120 6.80439 6.84055 7.67623 7.70136 7.79730 8.01852 8.33108 8.61907 9.03282 9.59177 11.10875 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.003417 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.027479 B = 8192.430007 C = 9216.519449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.074 3.926 3 H 0.094 0.906 4 O -0.294 6.294 5 C 0.137 3.863 6 C -0.181 4.181 7 C 0.135 3.865 8 F -0.135 7.135 9 C -0.181 4.181 10 C -0.019 4.019 11 C -0.192 4.192 12 C 0.163 3.837 13 H 0.117 0.883 14 N -0.732 5.732 15 C 0.512 3.488 16 O -0.527 6.527 17 C -0.130 4.130 18 C 0.038 3.962 19 C -0.529 4.529 20 H 0.055 0.945 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.400 0.600 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 2.234 21.320 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.018 3.982 3 H 0.112 0.888 4 O -0.207 6.207 5 C 0.091 3.909 6 C -0.200 4.200 7 C 0.115 3.885 8 F -0.113 7.113 9 C -0.200 4.200 10 C -0.038 4.038 11 C -0.194 4.194 12 C 0.057 3.943 13 H 0.135 0.865 14 N -0.387 5.387 15 C 0.301 3.699 16 O -0.402 6.402 17 C -0.170 4.170 18 C 0.000 4.000 19 C -0.568 4.568 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.528 5.528 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.158 0.842 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.024 1.228 21.211 21.272 hybrid contribution 0.599 0.938 -0.643 1.285 sum -0.425 2.166 20.569 20.687 Atomic orbital electron populations 1.21898 0.91033 1.04039 1.03650 1.23668 0.96537 0.95426 0.82560 0.88788 1.86883 1.34354 1.62102 1.37378 1.19010 0.86491 0.93367 0.92067 1.19923 0.92788 1.06614 1.00721 1.17127 0.86107 0.96811 0.88414 1.91516 1.60206 1.84776 1.74830 1.21096 1.02006 1.05502 0.91367 1.20299 0.90383 0.92194 1.00901 1.21196 0.98860 1.05753 0.93598 1.21017 0.93458 0.92568 0.87218 0.86535 1.46167 1.73224 1.12730 1.06560 1.21674 0.75340 0.89814 0.83038 1.90690 1.47644 1.18262 1.83556 1.21893 1.01749 0.98508 0.94805 1.18897 0.98521 0.94913 0.87650 1.21170 1.47580 0.95842 0.92185 0.92653 1.25015 0.95349 0.95038 0.98871 1.69976 1.48653 1.13563 1.20574 0.86655 0.79022 0.80780 0.81492 1.20231 1.21262 1.20243 0.91001 0.90934 0.89651 0.84221 0.84015 0.84217 0.76527 0.90064 0.90088 0.95820 0.95793 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.59 37.16 0.36 -0.78 16 2 C 0.07 0.70 3.97 -25.82 -0.10 0.59 16 3 H 0.09 0.71 7.82 -51.93 -0.41 0.31 16 4 O -0.29 -3.32 10.81 -20.15 -0.22 -3.54 16 5 C 0.14 1.65 7.04 -38.96 -0.27 1.38 16 6 C -0.18 -2.04 10.04 -39.24 -0.39 -2.44 16 7 C 0.13 1.58 7.28 -39.52 -0.29 1.29 16 8 F -0.13 -1.57 17.26 2.25 0.04 -1.53 16 9 C -0.18 -2.14 10.04 -39.45 -0.40 -2.54 16 10 C -0.02 -0.26 10.03 -39.73 -0.40 -0.66 16 11 C -0.19 -2.48 5.93 -104.08 -0.62 -3.10 16 12 C 0.16 1.98 2.98 -67.70 -0.20 1.78 16 13 H 0.12 1.61 7.42 -51.93 -0.39 1.22 16 14 N -0.73 -9.15 5.19 -53.58 -0.28 -9.43 16 15 C 0.51 8.94 7.83 -10.99 -0.09 8.85 16 16 O -0.53 -11.41 15.67 5.56 0.09 -11.32 16 17 C -0.13 -2.45 5.64 -27.89 -0.16 -2.60 16 18 C 0.04 0.97 4.26 -27.88 -0.12 0.86 16 19 C -0.53 -14.61 9.11 -34.44 -0.31 -14.92 16 20 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 23 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.40 3.77 8.42 -40.82 -0.34 3.43 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.02 0.67 8.10 -51.92 -0.42 0.25 16 37 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -32.81 333.04 -7.62 -40.43 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.90 Total: 1.00 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -3.09 Total: -10.70 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.46 Total: -35.60 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.13 Total: -14.87 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.81 -7.62 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360633521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.617 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds