Wall clock time and date at job start Tue Mar 31 2020 07:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.80847 * 2 1 4 4 O 1.43762 * 110.74910 * 123.31523 * 2 1 3 5 5 C 1.36130 * 109.29162 * 145.88972 * 4 2 1 6 6 C 1.39250 * 129.85545 * 161.42758 * 5 4 2 7 7 C 1.38143 * 120.22494 * 179.58341 * 6 5 4 8 8 F 1.35108 * 119.85074 * 180.02562 * 7 6 5 9 9 C 1.38509 * 120.29983 * 0.02858 * 7 6 5 10 10 C 1.38314 * 119.73974 * 0.16759 * 9 7 6 11 11 C 1.37760 * 120.00374 * 359.97438 * 10 9 7 12 12 C 1.51658 * 132.13877 * 179.60158 * 11 10 9 13 13 H 1.09002 * 110.94429 * 77.58403 * 12 11 10 14 14 N 1.46504 * 110.97615 * 313.90243 * 12 11 10 15 15 C 1.34773 * 120.00127 * 89.44446 * 14 12 11 16 16 O 1.21277 * 119.99945 * 0.02562 * 15 14 12 17 17 C 1.50695 * 120.00102 * 180.02562 * 15 14 12 18 18 C 1.52994 * 109.47484 * 180.02562 * 17 15 14 19 19 C 1.50703 * 109.47458 * 179.97438 * 18 17 15 20 20 H 1.07993 * 119.99977 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99683 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00437 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99420 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47311 * 59.99998 * 23 21 19 25 25 H 1.48503 * 109.46728 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47042 * 299.99750 * 23 21 19 27 27 H 1.09003 * 109.47094 * 183.30720 * 1 2 3 28 28 H 1.08998 * 109.47280 * 303.30704 * 1 2 3 29 29 H 1.09000 * 109.47195 * 63.31106 * 1 2 3 30 30 H 1.08007 * 119.88441 * 359.57143 * 6 5 4 31 31 H 1.08000 * 120.13613 * 180.15188 * 9 7 6 32 32 H 1.07992 * 119.99666 * 179.97438 * 10 9 7 33 33 H 0.97000 * 119.99586 * 269.44964 * 14 12 11 34 34 H 1.09004 * 109.47165 * 299.99911 * 17 15 14 35 35 H 1.09006 * 109.47596 * 59.99524 * 17 15 14 36 36 H 1.09010 * 109.47084 * 299.99762 * 18 17 15 37 37 H 1.09003 * 109.47657 * 59.99141 * 18 17 15 38 38 H 0.96993 * 120.00111 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 8 2.0393 -0.7384 1.1234 5 6 3.1934 -1.3645 0.7642 6 6 4.2082 -1.8905 1.5596 7 6 5.3030 -2.4996 0.9775 8 9 6.2830 -3.0078 1.7564 9 6 5.4006 -2.5916 -0.4011 10 6 4.3978 -2.0673 -1.1965 11 6 3.3071 -1.4572 -0.6170 12 6 2.0778 -0.7951 -1.2091 13 1 1.3571 -1.5408 -1.5447 14 7 2.4438 0.1060 -2.3047 15 6 2.5151 -0.3617 -3.5666 16 8 2.2758 -1.5284 -3.7953 17 6 2.8921 0.5651 -4.6935 18 6 2.8989 -0.2113 -6.0118 19 6 3.2753 0.7157 -7.1389 20 1 3.4888 1.7545 -6.9352 21 6 3.3481 0.2371 -8.4299 22 7 3.0886 -1.0281 -8.6779 23 14 3.8154 1.3860 -9.8268 24 1 5.1672 1.9468 -9.5753 25 1 3.8218 0.6324 -11.1064 26 1 2.8280 2.4921 -9.9093 27 1 -0.3633 -1.0260 0.0593 28 1 -0.3634 0.5643 0.8588 29 1 -0.3633 0.4616 -0.9182 30 1 4.1392 -1.8219 2.6352 31 1 6.2565 -3.0705 -0.8533 32 1 4.4699 -2.1364 -2.2718 33 1 2.6349 1.0393 -2.1218 34 1 2.1673 1.3770 -4.7542 35 1 3.8843 0.9769 -4.5089 36 1 3.6234 -1.0235 -5.9515 37 1 1.9065 -0.6228 -6.1963 38 1 3.1395 -1.3646 -9.5862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360633521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:39 Heat of formation + Delta-G solvation = -118.388931 kcal Electronic energy + Delta-G solvation = -22823.519960 eV Core-core repulsion = 19158.625392 eV Total energy + Delta-G solvation = -3664.894568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.05208 -42.58491 -40.44998 -38.47264 -36.14814 -35.51594 -33.30877 -32.55270 -31.72284 -31.17748 -28.08652 -26.78737 -24.07322 -23.93624 -22.97096 -22.43718 -21.21088 -19.30490 -18.74772 -18.36872 -17.62181 -17.51360 -17.26237 -16.69829 -16.68572 -16.40367 -16.24470 -15.65225 -15.38990 -14.91978 -14.63719 -14.27421 -14.19438 -14.11531 -13.99358 -13.49569 -13.31090 -13.22256 -12.93163 -12.77604 -12.58390 -12.47265 -12.21709 -11.89117 -11.81714 -11.62182 -11.30818 -10.80572 -10.54867 -10.24639 -10.03124 -9.38720 -8.16715 -6.30417 -0.10840 0.07991 1.43398 1.47209 1.54900 1.66438 1.81249 2.07391 2.42316 2.49409 3.11753 3.16633 3.25852 3.34872 3.66982 3.81711 3.92507 3.98754 4.06604 4.11486 4.36542 4.46423 4.56959 4.58758 4.73652 4.77745 4.86445 4.93373 5.04728 5.09097 5.18939 5.20153 5.33052 5.44677 5.52302 5.65642 5.87204 5.93155 6.19127 6.52684 6.88170 7.29573 7.39986 8.95491 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.003417 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.027479 B = 8192.430007 C = 9216.519449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 H 0.122 0.878 4 O -0.296 6.296 5 C 0.137 3.863 6 C -0.175 4.175 7 C 0.134 3.866 8 F -0.133 7.133 9 C -0.181 4.181 10 C -0.036 4.036 11 C -0.206 4.206 12 C 0.160 3.840 13 H 0.096 0.904 14 N -0.705 5.705 15 C 0.518 3.482 16 O -0.578 6.578 17 C -0.119 4.119 18 C 0.042 3.958 19 C -0.544 4.544 20 H 0.076 0.924 21 C -0.005 4.005 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.289 1.289 26 H -0.262 1.262 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.117 0.883 33 H 0.420 0.580 34 H 0.108 0.892 35 H 0.104 0.896 36 H -0.018 1.018 37 H -0.016 1.016 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 4.930 22.891 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.026 3.974 3 H 0.140 0.860 4 O -0.209 6.209 5 C 0.091 3.909 6 C -0.194 4.194 7 C 0.115 3.885 8 F -0.112 7.112 9 C -0.199 4.199 10 C -0.054 4.054 11 C -0.209 4.209 12 C 0.054 3.946 13 H 0.114 0.886 14 N -0.359 5.359 15 C 0.307 3.693 16 O -0.457 6.457 17 C -0.158 4.158 18 C 0.005 3.995 19 C -0.581 4.581 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.577 5.577 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.215 1.215 26 H -0.187 1.187 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.179 0.821 31 H 0.172 0.828 32 H 0.135 0.865 33 H 0.258 0.742 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.812 3.985 22.841 23.200 hybrid contribution 0.531 0.052 -1.060 1.187 sum -0.280 4.037 21.781 22.154 Atomic orbital electron populations 1.21939 0.89617 1.03995 1.04903 1.23847 0.97534 0.95804 0.80225 0.86037 1.86887 1.33918 1.62221 1.37907 1.19042 0.86883 0.93483 0.91521 1.20142 0.92071 1.05414 1.01808 1.17135 0.86339 0.96834 0.88219 1.91523 1.60192 1.84762 1.74690 1.21202 1.01980 1.05102 0.91661 1.20193 0.91591 0.93657 0.99990 1.21288 0.98902 1.06244 0.94433 1.21113 0.93065 0.92620 0.87808 0.88637 1.45751 1.71349 1.13768 1.05079 1.21338 0.74965 0.88676 0.84316 1.90682 1.50230 1.20258 1.84525 1.21645 1.04033 0.98271 0.91889 1.18683 0.94854 0.94417 0.91570 1.21696 1.46777 0.96893 0.92773 0.90606 1.26096 0.95211 0.96674 1.02291 1.70160 1.50265 1.16066 1.21213 0.85421 0.79407 0.78479 0.77231 1.18783 1.21502 1.18677 0.91879 0.89000 0.88918 0.82064 0.82820 0.86464 0.74173 0.87367 0.87788 0.99916 0.99793 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.59 71.98 0.69 -1.20 16 2 C 0.08 1.32 3.97 31.18 0.12 1.45 16 3 H 0.12 1.35 7.82 -2.39 -0.02 1.33 16 4 O -0.30 -5.99 10.81 -95.03 -1.03 -7.02 16 5 C 0.14 3.09 7.04 22.67 0.16 3.25 16 6 C -0.18 -3.61 10.04 22.49 0.23 -3.38 16 7 C 0.13 2.96 7.28 22.31 0.16 3.12 16 8 F -0.13 -2.90 17.26 44.97 0.78 -2.12 16 9 C -0.18 -4.24 10.04 22.35 0.22 -4.02 16 10 C -0.04 -0.97 10.03 22.17 0.22 -0.75 16 11 C -0.21 -5.26 5.93 -19.51 -0.12 -5.38 16 12 C 0.16 3.76 2.98 45.14 0.13 3.89 16 13 H 0.10 2.70 7.42 -2.39 -0.02 2.68 16 14 N -0.70 -16.77 5.19 -441.83 -2.29 -19.06 16 15 C 0.52 18.25 7.83 87.66 0.69 18.94 16 16 O -0.58 -26.42 15.67 -3.02 -0.05 -26.46 16 17 C -0.12 -4.42 5.64 29.84 0.17 -4.25 16 18 C 0.04 2.28 4.26 29.85 0.13 2.40 16 19 C -0.54 -30.11 9.11 25.60 0.23 -29.88 16 20 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 21 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 22 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 23 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.42 6.71 8.42 -92.71 -0.78 5.93 16 34 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 36 H -0.02 -1.07 8.10 -2.38 -0.02 -1.09 16 37 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -74.46 333.04 3.53 -70.92 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.30 Total: 12.19 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.50 Total: -15.63 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -2.01 Total: -77.41 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.07 Total: -33.48 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.46 3.53 -70.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360633521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.464 kcal (2) G-P(sol) polarization free energy of solvation -74.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds