Wall clock time and date at job start Tue Mar 31 2020 07:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.99475 * 2 1 4 4 C 1.55048 * 109.81910 * 238.69583 * 2 1 3 5 5 S 1.83457 * 102.08775 * 198.33925 * 4 2 1 6 6 C 1.83094 * 97.47638 * 23.01689 * 5 4 2 7 7 C 1.53852 * 109.97357 * 121.26877 * 2 1 3 8 8 H 1.08998 * 109.61396 * 46.86980 * 7 2 1 9 9 N 1.46902 * 109.60879 * 286.53367 * 7 2 1 10 10 C 1.46906 * 110.99631 * 154.63896 * 9 7 2 11 11 C 1.50700 * 109.46735 * 180.02562 * 10 9 7 12 12 C 1.38327 * 119.96836 * 270.27480 * 11 10 9 13 13 C 1.38274 * 120.13870 * 180.23201 * 12 11 10 14 14 C 1.38120 * 120.07054 * 359.49508 * 13 12 11 15 15 C 1.38854 * 119.93208 * 0.24938 * 14 13 12 16 16 O 1.35745 * 120.07183 * 179.97438 * 15 14 13 17 17 C 1.34830 * 117.00000 * 354.46763 * 16 15 14 18 18 H 1.07993 * 119.99847 * 5.04988 * 17 16 15 19 19 C 1.38657 * 120.00052 * 185.05927 * 17 16 15 20 20 N 1.31557 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47078 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46980 * 119.99511 * 21 19 17 24 24 H 1.48493 * 109.46916 * 239.99711 * 21 19 17 25 25 C 1.38076 * 119.96553 * 89.99629 * 11 10 9 26 26 H 1.08996 * 109.46749 * 298.73571 * 1 2 3 27 27 H 1.08997 * 109.46914 * 58.73101 * 1 2 3 28 28 H 1.09003 * 109.47052 * 178.73214 * 1 2 3 29 29 H 1.08998 * 110.81214 * 80.24631 * 4 2 1 30 30 H 1.08995 * 111.18370 * 316.60180 * 4 2 1 31 31 H 1.08996 * 110.40068 * 243.49024 * 6 5 4 32 32 H 1.08997 * 110.49874 * 121.12459 * 6 5 4 33 33 H 1.00895 * 110.99756 * 278.58677 * 9 7 2 34 34 H 1.09003 * 109.47337 * 60.00368 * 10 9 7 35 35 H 1.08996 * 109.47035 * 299.99375 * 10 9 7 36 36 H 1.08003 * 119.92526 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.96585 * 179.76608 * 13 12 11 38 38 H 1.08004 * 120.03653 * 180.27767 * 14 13 12 39 39 H 0.96993 * 120.00384 * 179.97438 * 20 19 17 40 40 H 1.08004 * 120.03868 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0557 -0.7579 -1.2463 5 16 3.7879 -1.1280 -0.7685 6 6 3.5612 -1.0280 1.0456 7 6 2.0556 -0.7505 1.2359 8 1 1.5209 -1.6940 1.3459 9 7 1.8539 0.0730 2.4355 10 6 1.7623 -0.7639 3.6394 11 6 1.5554 0.1138 4.8468 12 6 2.6474 0.6005 5.5426 13 6 2.4616 1.4022 6.6537 14 6 1.1843 1.7281 7.0662 15 6 0.0861 1.2455 6.3668 16 8 -1.1705 1.5636 6.7700 17 6 -1.2872 2.2557 7.9212 18 1 -0.4027 2.6021 8.4350 19 6 -2.5427 2.5224 8.4456 20 7 -3.6202 2.1007 7.8195 21 14 -2.7044 3.4806 10.0410 22 1 -1.3532 3.8376 10.5430 23 1 -3.4857 4.7197 9.7971 24 1 -3.4027 2.6458 11.0511 25 6 0.2760 0.4361 5.2540 26 1 -0.3633 0.4941 0.9011 27 1 -0.3633 0.5334 -0.8784 28 1 -0.3633 -1.0274 -0.0227 29 1 2.0247 -0.1196 -2.1293 30 1 1.4946 -1.6771 -1.4140 31 1 4.1532 -0.2110 1.4580 32 1 3.8364 -1.9713 1.5172 33 1 2.5855 0.7615 2.5286 34 1 2.6845 -1.3331 3.7572 35 1 0.9215 -1.4505 3.5414 36 1 3.6472 0.3502 5.2196 37 1 3.3161 1.7775 7.1971 38 1 1.0399 2.3580 7.9315 39 1 -4.4985 2.2869 8.1865 40 1 -0.5762 0.0592 4.7080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397877724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:01 Heat of formation + Delta-G solvation = -10.725303 kcal Electronic energy + Delta-G solvation = -20562.976965 eV Core-core repulsion = 17468.964219 eV Total energy + Delta-G solvation = -3094.012747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.20745 -38.30797 -36.60693 -34.10725 -32.29068 -31.03354 -29.41953 -28.74262 -27.24298 -25.56592 -24.74793 -22.84060 -21.68497 -20.83500 -20.26787 -17.70009 -17.01429 -16.70408 -16.03440 -15.65994 -15.03493 -14.77174 -14.57733 -14.36483 -13.94748 -13.65316 -13.42160 -13.32686 -12.99930 -12.87021 -12.56010 -12.38681 -12.20332 -11.93719 -11.74536 -11.52841 -11.37660 -11.24354 -11.00533 -10.85492 -10.71907 -10.57508 -10.42254 -10.18717 -9.34816 -8.86246 -8.52141 -8.10715 -7.95181 -7.25819 -6.45608 -4.04705 1.54830 2.06285 2.13245 2.34286 3.11393 3.13092 3.18544 3.94751 3.96570 4.23462 4.54859 4.56913 4.71899 4.77685 4.90824 5.01230 5.11444 5.20144 5.23454 5.29050 5.36253 5.49086 5.54007 5.54954 5.66458 5.80178 5.81103 5.89008 5.99923 6.15185 6.23216 6.33895 6.62539 6.87742 6.89612 7.05805 7.19593 7.31323 7.35723 7.42955 7.79525 7.99370 9.00186 9.70475 10.72507 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.029073 B = 0.002930 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.846336 B = 9555.637718 C =10303.604573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.089 0.911 4 C -0.067 4.067 5 S -0.300 6.300 6 C -0.103 4.103 7 C 0.086 3.914 8 H 0.091 0.909 9 N -0.666 5.666 10 C 0.106 3.894 11 C -0.050 4.050 12 C -0.207 4.207 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.152 3.848 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.165 4.165 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.347 0.653 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.061 -5.169 -12.839 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.107 0.893 4 C -0.215 4.215 5 S -0.075 6.075 6 C -0.253 4.253 7 C -0.026 4.026 8 H 0.109 0.891 9 N -0.296 5.296 10 C -0.022 4.022 11 C -0.050 4.050 12 C -0.227 4.227 13 C -0.094 4.094 14 C -0.251 4.251 15 C 0.098 3.902 16 O -0.082 6.082 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.185 4.185 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.166 0.834 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.874 -5.402 -13.631 18.255 hybrid contribution 0.040 0.478 1.694 1.761 sum 10.914 -4.924 -11.937 16.907 Atomic orbital electron populations 1.21684 0.92784 1.01990 1.02979 1.22063 0.97819 1.00062 0.90631 0.89286 1.24357 0.92628 1.03414 1.01125 1.87568 1.17585 1.94492 1.07810 1.24885 1.00977 1.05706 0.93705 1.22517 0.91046 0.97328 0.91720 0.89117 1.60526 1.52492 1.15747 1.00865 1.20862 1.00339 0.93833 0.87168 1.19105 0.92739 0.98054 0.95150 1.20411 0.96836 1.05667 0.99762 1.20688 0.96014 0.96840 0.95834 1.21193 0.92306 1.07342 1.04265 1.19357 0.85783 0.92133 0.92898 1.83980 1.21306 1.64305 1.38575 1.21364 0.94140 1.32640 0.98625 0.89073 1.25283 0.94199 0.97708 0.99320 1.70045 0.97977 1.43217 1.38493 0.85656 0.78863 0.78883 0.80077 1.19128 1.20136 1.20152 1.20013 0.96395 1.03429 0.98686 0.90449 0.92660 0.92848 0.87949 0.89020 0.88858 0.88782 0.83381 0.94633 0.90329 0.88106 0.87576 0.85650 0.92081 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.17 37.16 0.34 -0.91 16 2 C -0.09 -0.77 2.78 -89.09 -0.25 -1.02 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.07 -0.55 6.73 38.24 0.26 -0.30 16 5 S -0.30 -3.09 23.25 -107.50 -2.50 -5.59 16 6 C -0.10 -0.95 6.82 37.83 0.26 -0.69 16 7 C 0.09 0.82 2.27 -66.60 -0.15 0.67 16 8 H 0.09 0.89 7.75 -51.93 -0.40 0.48 16 9 N -0.67 -7.68 6.15 -106.81 -0.66 -8.34 16 10 C 0.11 1.37 5.61 -4.97 -0.03 1.34 16 11 C -0.05 -0.84 5.39 -104.65 -0.56 -1.40 16 12 C -0.21 -3.41 9.70 -39.54 -0.38 -3.80 16 13 C -0.08 -1.36 10.04 -39.61 -0.40 -1.75 16 14 C -0.23 -4.98 9.17 -39.40 -0.36 -5.34 16 15 C 0.15 3.63 6.65 -39.11 -0.26 3.37 16 16 O -0.18 -5.05 9.76 0.06 0.00 -5.05 16 17 C -0.39 -10.89 9.49 30.89 0.29 -10.59 16 18 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 21 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 26 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 31 H 0.09 0.85 7.60 -51.93 -0.39 0.46 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.35 3.93 8.13 -39.29 -0.32 3.61 16 34 H 0.04 0.41 8.01 -51.93 -0.42 -0.01 16 35 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 36 H 0.10 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.13 2.72 5.64 -52.48 -0.30 2.42 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -29.73 342.39 -9.86 -39.59 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.88 Total: 6.50 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -1.72 Total: -23.25 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.10 Total: -32.76 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: 0.00 Total: -5.05 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.50 Total: -5.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.73 -9.86 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397877724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.865 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds