Wall clock time and date at job start Tue Mar 31 2020 07:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.99475 * 2 1 4 4 C 1.55048 * 109.81910 * 238.69583 * 2 1 3 5 5 S 1.83457 * 102.08775 * 198.33925 * 4 2 1 6 6 C 1.83094 * 97.47638 * 23.01689 * 5 4 2 7 7 C 1.53852 * 109.97357 * 121.26877 * 2 1 3 8 8 H 1.08998 * 109.61396 * 46.86980 * 7 2 1 9 9 N 1.46902 * 109.60879 * 286.53367 * 7 2 1 10 10 C 1.46906 * 110.99631 * 154.63896 * 9 7 2 11 11 C 1.50700 * 109.46735 * 180.02562 * 10 9 7 12 12 C 1.38327 * 119.96836 * 270.27480 * 11 10 9 13 13 C 1.38274 * 120.13870 * 180.23201 * 12 11 10 14 14 C 1.38120 * 120.07054 * 359.49508 * 13 12 11 15 15 C 1.38854 * 119.93208 * 0.24938 * 14 13 12 16 16 O 1.35745 * 120.07183 * 179.97438 * 15 14 13 17 17 C 1.34830 * 117.00000 * 354.46763 * 16 15 14 18 18 H 1.07993 * 119.99847 * 5.04988 * 17 16 15 19 19 C 1.38657 * 120.00052 * 185.05927 * 17 16 15 20 20 N 1.31557 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00005 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47078 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46980 * 119.99511 * 21 19 17 24 24 H 1.48493 * 109.46916 * 239.99711 * 21 19 17 25 25 C 1.38076 * 119.96553 * 89.99629 * 11 10 9 26 26 H 1.08996 * 109.46749 * 298.73571 * 1 2 3 27 27 H 1.08997 * 109.46914 * 58.73101 * 1 2 3 28 28 H 1.09003 * 109.47052 * 178.73214 * 1 2 3 29 29 H 1.08998 * 110.81214 * 80.24631 * 4 2 1 30 30 H 1.08995 * 111.18370 * 316.60180 * 4 2 1 31 31 H 1.08996 * 110.40068 * 243.49024 * 6 5 4 32 32 H 1.08997 * 110.49874 * 121.12459 * 6 5 4 33 33 H 1.00895 * 110.99756 * 278.58677 * 9 7 2 34 34 H 1.09003 * 109.47337 * 60.00368 * 10 9 7 35 35 H 1.08996 * 109.47035 * 299.99375 * 10 9 7 36 36 H 1.08003 * 119.92526 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.96585 * 179.76608 * 13 12 11 38 38 H 1.08004 * 120.03653 * 180.27767 * 14 13 12 39 39 H 0.96993 * 120.00384 * 179.97438 * 20 19 17 40 40 H 1.08004 * 120.03868 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0557 -0.7579 -1.2463 5 16 3.7879 -1.1280 -0.7685 6 6 3.5612 -1.0280 1.0456 7 6 2.0556 -0.7505 1.2359 8 1 1.5209 -1.6940 1.3459 9 7 1.8539 0.0730 2.4355 10 6 1.7623 -0.7639 3.6394 11 6 1.5554 0.1138 4.8468 12 6 2.6474 0.6005 5.5426 13 6 2.4616 1.4022 6.6537 14 6 1.1843 1.7281 7.0662 15 6 0.0861 1.2455 6.3668 16 8 -1.1705 1.5636 6.7700 17 6 -1.2872 2.2557 7.9212 18 1 -0.4027 2.6021 8.4350 19 6 -2.5427 2.5224 8.4456 20 7 -3.6202 2.1007 7.8195 21 14 -2.7044 3.4806 10.0410 22 1 -1.3532 3.8376 10.5430 23 1 -3.4857 4.7197 9.7971 24 1 -3.4027 2.6458 11.0511 25 6 0.2760 0.4361 5.2540 26 1 -0.3633 0.4941 0.9011 27 1 -0.3633 0.5334 -0.8784 28 1 -0.3633 -1.0274 -0.0227 29 1 2.0247 -0.1196 -2.1293 30 1 1.4946 -1.6771 -1.4140 31 1 4.1532 -0.2110 1.4580 32 1 3.8364 -1.9713 1.5172 33 1 2.5855 0.7615 2.5286 34 1 2.6845 -1.3331 3.7572 35 1 0.9215 -1.4505 3.5414 36 1 3.6472 0.3502 5.2196 37 1 3.3161 1.7775 7.1971 38 1 1.0399 2.3580 7.9315 39 1 -4.4985 2.2869 8.1865 40 1 -0.5762 0.0592 4.7080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397877724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:01 Heat of formation + Delta-G solvation = -28.530420 kcal Electronic energy + Delta-G solvation = -20563.749053 eV Core-core repulsion = 17468.964219 eV Total energy + Delta-G solvation = -3094.784834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80821 -39.35048 -38.15078 -35.15493 -34.25390 -32.23062 -30.83672 -29.93617 -28.02779 -27.38968 -26.02173 -23.71209 -23.23149 -22.28263 -21.19727 -19.48139 -18.74744 -17.52645 -16.91731 -16.78868 -16.51678 -16.32070 -16.02002 -15.56671 -15.35646 -14.92868 -14.60402 -14.57252 -14.17989 -13.83718 -13.73094 -13.62878 -13.39415 -13.13704 -12.96435 -12.80717 -12.54189 -12.40549 -12.33611 -12.18573 -12.09171 -11.94800 -11.66730 -11.15754 -10.95776 -10.80668 -9.68325 -9.37355 -8.96695 -8.73196 -8.46213 -6.14511 0.53005 0.76061 0.83881 1.35132 1.40029 1.43496 1.53331 2.17955 2.77828 3.06631 3.30354 3.46636 3.52783 3.82584 3.88446 4.01981 4.08484 4.14065 4.19997 4.33643 4.41100 4.50445 4.55652 4.60521 4.66999 4.68661 4.76969 4.79728 4.81328 5.06566 5.11038 5.14325 5.24215 5.32494 5.44197 5.68480 5.75330 5.77812 5.95781 6.04483 6.25947 6.37562 6.98771 7.80814 8.77391 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.029073 B = 0.002930 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.846336 B = 9555.637718 C =10303.604573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.082 0.918 4 C -0.054 4.054 5 S -0.338 6.338 6 C -0.091 4.091 7 C 0.091 3.909 8 H 0.092 0.908 9 N -0.675 5.675 10 C 0.112 3.888 11 C -0.037 4.037 12 C -0.182 4.182 13 C -0.073 4.073 14 C -0.245 4.245 15 C 0.111 3.889 16 O -0.234 6.234 17 C -0.412 4.412 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.252 1.252 23 H -0.269 1.269 24 H -0.269 1.269 25 C -0.181 4.181 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.350 0.650 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.272 0.728 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.077 -5.589 -13.324 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.101 0.899 4 C -0.202 4.202 5 S -0.112 6.112 6 C -0.241 4.241 7 C -0.020 4.020 8 H 0.110 0.890 9 N -0.306 5.306 10 C -0.016 4.016 11 C -0.038 4.038 12 C -0.201 4.201 13 C -0.091 4.091 14 C -0.265 4.265 15 C 0.061 3.939 16 O -0.141 6.141 17 C -0.488 4.488 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.838 3.162 22 H -0.175 1.175 23 H -0.194 1.194 24 H -0.194 1.194 25 C -0.201 4.201 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.170 0.830 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.953 -5.836 -14.146 20.709 hybrid contribution -0.618 0.484 1.622 1.802 sum 13.335 -5.353 -12.524 19.061 Atomic orbital electron populations 1.21632 0.93021 1.02215 1.02212 1.22003 0.97450 0.99806 0.90936 0.89933 1.24366 0.90953 1.03922 1.00966 1.87739 1.19578 1.94645 1.09246 1.24830 1.00352 1.06301 0.92643 1.22491 0.91597 0.97054 0.90884 0.88968 1.60438 1.53125 1.16105 1.00935 1.20810 1.01686 0.93137 0.85936 1.19540 0.91153 0.97065 0.96053 1.20987 0.98668 1.02651 0.97800 1.21121 0.95413 0.96242 0.96293 1.21302 0.93394 1.07669 1.04127 1.19929 0.85388 0.93979 0.94604 1.83941 1.23885 1.66656 1.39662 1.21841 0.94942 1.32957 0.99072 0.88216 1.26575 0.93472 0.98782 1.03259 1.70189 0.98660 1.46062 1.41056 0.84536 0.79492 0.77254 0.74962 1.17495 1.19355 1.19357 1.20216 0.98074 1.03634 0.98140 0.92962 0.91595 0.92229 0.86846 0.88009 0.88381 0.87963 0.82998 0.91772 0.90542 0.83494 0.83868 0.86693 0.91890 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.17 71.98 0.66 -1.61 16 2 C -0.08 -1.32 2.78 -9.80 -0.03 -1.34 16 3 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 4 C -0.05 -0.76 6.73 72.68 0.49 -0.28 16 5 S -0.34 -6.19 23.25 -56.49 -1.31 -7.50 16 6 C -0.09 -1.40 6.82 72.42 0.49 -0.91 16 7 C 0.09 1.51 2.27 45.64 0.10 1.61 16 8 H 0.09 1.55 7.75 -2.39 -0.02 1.53 16 9 N -0.67 -13.86 6.15 -491.83 -3.02 -16.89 16 10 C 0.11 2.55 5.61 85.56 0.48 3.03 16 11 C -0.04 -1.18 5.39 -19.88 -0.11 -1.29 16 12 C -0.18 -5.21 9.70 22.30 0.22 -4.99 16 13 C -0.07 -2.39 10.04 22.25 0.22 -2.17 16 14 C -0.25 -10.60 9.17 22.39 0.21 -10.40 16 15 C 0.11 5.53 6.65 22.58 0.15 5.68 16 16 O -0.23 -14.24 9.76 -22.69 -0.22 -14.47 16 17 C -0.41 -24.17 9.49 67.92 0.64 -23.52 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 20 N -0.92 -56.90 13.67 21.61 0.30 -56.60 16 21 Si 1.02 43.06 29.55 68.60 2.03 45.08 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 C -0.18 -7.62 9.65 22.39 0.22 -7.41 16 26 H 0.05 1.18 8.09 -2.39 -0.02 1.16 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16 31 H 0.10 1.44 7.60 -2.39 -0.02 1.42 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.35 6.80 8.13 -89.70 -0.73 6.07 16 34 H 0.06 1.14 8.01 -2.39 -0.02 1.12 16 35 H 0.08 1.81 8.00 -2.39 -0.02 1.79 16 36 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 37 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 38 H 0.12 5.10 5.64 -2.91 -0.02 5.09 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 40 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -70.00 342.39 2.29 -67.71 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.31 Total: 27.14 kcal Atomic # 6 Polarization: -48.70 SS G_CDS: 4.21 Total: -44.48 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -2.73 Total: -73.49 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.22 Total: -14.47 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -6.19 SS G_CDS: -1.31 Total: -7.50 kcal Total: -70.00 2.29 -67.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397877724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.184 kcal (2) G-P(sol) polarization free energy of solvation -70.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds