Wall clock time and date at job start Tue Mar 31 2020 07:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 108.70319 * 2 1 4 4 C 1.54254 * 108.87450 * 118.46366 * 2 1 3 5 5 S 1.83952 * 102.58359 * 145.34995 * 4 2 1 6 6 C 1.83958 * 94.80526 * 325.50609 * 5 4 2 7 7 C 1.52331 * 108.86802 * 241.54744 * 2 1 3 8 8 H 1.08997 * 108.87101 * 118.36033 * 7 2 1 9 9 N 1.46903 * 108.86940 * 359.97438 * 7 2 1 10 10 C 1.46899 * 110.99671 * 155.00366 * 9 7 2 11 11 C 1.50701 * 109.46882 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96209 * 269.72611 * 11 10 9 13 13 C 1.38281 * 120.13561 * 179.76563 * 12 11 10 14 14 C 1.38127 * 120.06819 * 0.51099 * 13 12 11 15 15 C 1.38855 * 119.93240 * 359.74085 * 14 13 12 16 16 O 1.35749 * 120.07402 * 180.02562 * 15 14 13 17 17 C 1.34830 * 116.99391 * 354.44176 * 16 15 14 18 18 H 1.07999 * 120.00129 * 5.05392 * 17 16 15 19 19 C 1.38663 * 119.99825 * 185.05552 * 17 16 15 20 20 N 1.31560 * 119.99640 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00124 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47409 * 59.99714 * 21 19 17 23 23 H 1.48496 * 109.47456 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47306 * 300.00244 * 21 19 17 25 25 C 1.38076 * 119.96992 * 89.99781 * 11 10 9 26 26 H 1.09004 * 109.47007 * 302.98476 * 1 2 3 27 27 H 1.08995 * 109.47787 * 62.98947 * 1 2 3 28 28 H 1.09003 * 109.46789 * 182.98967 * 1 2 3 29 29 H 1.09003 * 110.78952 * 263.63049 * 4 2 1 30 30 H 1.09003 * 110.78359 * 27.07725 * 4 2 1 31 31 H 1.09004 * 110.78539 * 152.76299 * 6 5 4 32 32 H 1.08995 * 110.79091 * 276.02853 * 6 5 4 33 33 H 1.00895 * 111.00189 * 278.95799 * 9 7 2 34 34 H 1.08997 * 109.47602 * 299.99866 * 10 9 7 35 35 H 1.09002 * 109.47215 * 60.00651 * 10 9 7 36 36 H 1.07998 * 119.93286 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.96784 * 180.27471 * 13 12 11 38 38 H 1.07995 * 120.03259 * 179.76978 * 14 13 12 39 39 H 0.96993 * 119.99463 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.02611 * 359.96048 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8795 1.0325 0.0000 4 6 2.0290 -0.6956 1.2832 5 16 3.5561 -1.5460 0.7100 6 6 2.9048 -1.9169 -0.9699 7 6 2.0226 -0.6868 -1.2673 8 1 2.6002 0.0278 -1.8538 9 7 0.8609 -1.1157 -2.0576 10 6 1.2051 -1.2280 -3.4812 11 6 -0.0087 -1.6685 -4.2582 12 6 -0.2522 -3.0160 -4.4539 13 6 -1.3674 -3.4243 -5.1622 14 6 -2.2363 -2.4868 -5.6856 15 6 -1.9918 -1.1332 -5.4954 16 8 -2.8442 -0.2094 -6.0081 17 6 -3.8444 -0.6660 -6.7885 18 1 -3.9888 -1.7288 -6.9145 19 6 -4.6875 0.2291 -7.4293 20 7 -4.5112 1.5238 -7.2761 21 14 -6.0737 -0.4034 -8.5099 22 1 -6.9914 -1.2421 -7.6976 23 1 -6.8246 0.7462 -9.0752 24 1 -5.5075 -1.2173 -9.6154 25 6 -0.8736 -0.7265 -4.7789 26 1 -0.3633 0.5595 0.8621 27 1 -0.3634 0.4667 -0.9155 28 1 -0.3633 -1.0263 0.0536 29 1 2.2611 0.0377 2.0555 30 1 1.2955 -1.4178 1.6419 31 1 3.7179 -1.9933 -1.6919 32 1 2.3100 -2.8302 -0.9614 33 1 0.4855 -1.9840 -1.7067 34 1 1.5412 -0.2595 -3.8514 35 1 2.0022 -1.9611 -3.6055 36 1 0.4284 -3.7509 -4.0498 37 1 -1.5573 -4.4772 -5.3095 38 1 -3.1051 -2.8062 -6.2419 39 1 -5.1012 2.1499 -7.7241 40 1 -0.6808 0.3256 -4.6289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397877729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:12 Heat of formation + Delta-G solvation = -0.397331 kcal Electronic energy + Delta-G solvation = -20707.780065 eV Core-core repulsion = 17614.215173 eV Total energy + Delta-G solvation = -3093.564892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.24781 -38.45528 -36.59687 -33.92051 -32.28419 -30.93479 -29.44712 -28.81020 -27.11988 -25.49926 -24.65477 -23.63349 -21.66098 -20.68006 -19.49681 -17.76742 -17.12308 -16.69819 -16.26850 -15.46707 -15.06709 -14.73245 -14.58860 -14.36925 -13.99678 -13.72008 -13.45905 -13.41158 -13.01015 -12.65811 -12.36008 -12.26484 -12.17690 -11.99316 -11.77788 -11.50505 -11.26593 -11.07900 -10.82382 -10.78234 -10.72199 -10.59916 -10.43578 -10.13922 -9.35197 -8.85088 -8.49571 -8.09660 -7.97110 -7.25428 -6.45084 -4.04336 1.61176 2.03735 2.09756 2.34813 3.12631 3.13490 3.16468 3.95968 4.02789 4.22236 4.56898 4.60935 4.73508 4.81000 4.90565 5.02285 5.11971 5.20139 5.29379 5.35721 5.38641 5.54646 5.55856 5.63652 5.69393 5.83177 5.89542 5.95237 6.11307 6.15964 6.34366 6.49548 6.63535 6.89714 6.92479 7.05607 7.20754 7.31667 7.36608 7.43394 7.80101 7.99658 9.00433 9.70724 10.72882 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.002956 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.730713 B = 9468.545189 C =10005.025729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 H 0.083 0.917 4 C -0.060 4.060 5 S -0.308 6.308 6 C -0.094 4.094 7 C 0.087 3.913 8 H 0.092 0.908 9 N -0.667 5.667 10 C 0.103 3.897 11 C -0.048 4.048 12 C -0.208 4.208 13 C -0.075 4.075 14 C -0.232 4.232 15 C 0.152 3.848 16 O -0.178 6.178 17 C -0.393 4.393 18 H 0.091 0.909 19 C 0.040 3.960 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.166 4.166 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.345 0.655 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.270 0.730 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.450 -5.586 12.212 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.208 4.208 5 S -0.082 6.082 6 C -0.244 4.244 7 C -0.025 4.025 8 H 0.110 0.890 9 N -0.298 5.298 10 C -0.025 4.025 11 C -0.049 4.049 12 C -0.227 4.227 13 C -0.094 4.094 14 C -0.252 4.252 15 C 0.098 3.902 16 O -0.081 6.081 17 C -0.469 4.469 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.186 4.186 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.165 0.835 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.154 -4.707 12.622 18.144 hybrid contribution -1.198 -1.115 -1.120 1.983 sum 10.956 -5.822 11.502 16.918 Atomic orbital electron populations 1.21672 0.92508 1.02050 1.02296 1.21615 0.98518 1.00003 0.90727 0.89831 1.24353 0.95007 1.01117 1.00335 1.87987 1.25895 1.76615 1.17718 1.25071 1.02551 1.01796 0.94966 1.22215 0.90051 0.94718 0.95504 0.89026 1.60909 1.29081 1.37852 1.01940 1.20881 0.94107 1.00539 0.86994 1.19109 0.95409 0.92850 0.97546 1.20409 1.00408 0.94458 1.07473 1.20689 0.94121 0.98022 0.96543 1.21184 1.03032 0.92864 1.08085 1.19359 0.89712 0.88809 0.92286 1.83981 1.35480 1.31746 1.56903 1.21268 1.06659 0.93559 1.25397 0.89185 1.25277 0.98689 0.94945 0.97551 1.70029 1.37582 1.01006 1.41138 0.85795 0.79817 0.78297 0.79606 1.19516 1.20270 1.19528 1.20013 0.94989 0.99185 1.04395 0.93823 0.89992 0.92829 0.87907 0.89155 0.87905 0.89231 0.83526 0.90337 0.94717 0.88151 0.87614 0.85689 0.91976 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 7.92 37.16 0.29 -0.96 16 2 C -0.09 -0.79 3.17 -90.31 -0.29 -1.08 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.06 -0.50 6.92 37.81 0.26 -0.24 16 5 S -0.31 -3.17 23.27 -107.50 -2.50 -5.67 16 6 C -0.09 -0.85 6.67 37.82 0.25 -0.60 16 7 C 0.09 0.83 2.92 -67.39 -0.20 0.63 16 8 H 0.09 0.89 7.78 -51.93 -0.40 0.49 16 9 N -0.67 -7.47 4.00 -107.65 -0.43 -7.90 16 10 C 0.10 1.31 5.59 -4.98 -0.03 1.28 16 11 C -0.05 -0.81 5.39 -104.65 -0.56 -1.37 16 12 C -0.21 -3.40 9.70 -39.53 -0.38 -3.79 16 13 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 14 C -0.23 -4.97 9.17 -39.39 -0.36 -5.33 16 15 C 0.15 3.62 6.65 -39.11 -0.26 3.36 16 16 O -0.18 -5.04 9.76 0.05 0.00 -5.03 16 17 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 21 Si 0.94 20.40 29.55 -169.99 -5.02 15.37 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C -0.17 -3.41 9.64 -39.40 -0.38 -3.79 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 1.00 7.46 -51.93 -0.39 0.61 16 28 H 0.05 0.54 7.50 -51.93 -0.39 0.15 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.73 7.83 -51.93 -0.41 0.32 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.80 7.63 -51.93 -0.40 0.40 16 33 H 0.34 3.82 7.67 -39.29 -0.30 3.51 16 34 H 0.08 1.01 7.98 -51.93 -0.41 0.59 16 35 H 0.03 0.39 7.82 -51.93 -0.41 -0.01 16 36 H 0.10 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.13 2.69 5.64 -52.49 -0.30 2.40 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -29.59 337.88 -9.72 -39.32 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.77 Total: 6.54 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -1.85 Total: -23.28 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.33 Total: -32.34 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: 0.00 Total: -5.03 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.50 Total: -5.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.59 -9.72 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397877729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.919 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds