Wall clock time and date at job start Tue Mar 31 2020 07:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 108.70319 * 2 1 4 4 C 1.54254 * 108.87450 * 118.46366 * 2 1 3 5 5 S 1.83952 * 102.58359 * 145.34995 * 4 2 1 6 6 C 1.83958 * 94.80526 * 325.50609 * 5 4 2 7 7 C 1.52331 * 108.86802 * 241.54744 * 2 1 3 8 8 H 1.08997 * 108.87101 * 118.36033 * 7 2 1 9 9 N 1.46903 * 108.86940 * 359.97438 * 7 2 1 10 10 C 1.46899 * 110.99671 * 155.00366 * 9 7 2 11 11 C 1.50701 * 109.46882 * 180.02562 * 10 9 7 12 12 C 1.38328 * 119.96209 * 269.72611 * 11 10 9 13 13 C 1.38281 * 120.13561 * 179.76563 * 12 11 10 14 14 C 1.38127 * 120.06819 * 0.51099 * 13 12 11 15 15 C 1.38855 * 119.93240 * 359.74085 * 14 13 12 16 16 O 1.35749 * 120.07402 * 180.02562 * 15 14 13 17 17 C 1.34830 * 116.99391 * 354.44176 * 16 15 14 18 18 H 1.07999 * 120.00129 * 5.05392 * 17 16 15 19 19 C 1.38663 * 119.99825 * 185.05552 * 17 16 15 20 20 N 1.31560 * 119.99640 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00124 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47409 * 59.99714 * 21 19 17 23 23 H 1.48496 * 109.47456 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47306 * 300.00244 * 21 19 17 25 25 C 1.38076 * 119.96992 * 89.99781 * 11 10 9 26 26 H 1.09004 * 109.47007 * 302.98476 * 1 2 3 27 27 H 1.08995 * 109.47787 * 62.98947 * 1 2 3 28 28 H 1.09003 * 109.46789 * 182.98967 * 1 2 3 29 29 H 1.09003 * 110.78952 * 263.63049 * 4 2 1 30 30 H 1.09003 * 110.78359 * 27.07725 * 4 2 1 31 31 H 1.09004 * 110.78539 * 152.76299 * 6 5 4 32 32 H 1.08995 * 110.79091 * 276.02853 * 6 5 4 33 33 H 1.00895 * 111.00189 * 278.95799 * 9 7 2 34 34 H 1.08997 * 109.47602 * 299.99866 * 10 9 7 35 35 H 1.09002 * 109.47215 * 60.00651 * 10 9 7 36 36 H 1.07998 * 119.93286 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.96784 * 180.27471 * 13 12 11 38 38 H 1.07995 * 120.03259 * 179.76978 * 14 13 12 39 39 H 0.96993 * 119.99463 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.02611 * 359.96048 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8795 1.0325 0.0000 4 6 2.0290 -0.6956 1.2832 5 16 3.5561 -1.5460 0.7100 6 6 2.9048 -1.9169 -0.9699 7 6 2.0226 -0.6868 -1.2673 8 1 2.6002 0.0278 -1.8538 9 7 0.8609 -1.1157 -2.0576 10 6 1.2051 -1.2280 -3.4812 11 6 -0.0087 -1.6685 -4.2582 12 6 -0.2522 -3.0160 -4.4539 13 6 -1.3674 -3.4243 -5.1622 14 6 -2.2363 -2.4868 -5.6856 15 6 -1.9918 -1.1332 -5.4954 16 8 -2.8442 -0.2094 -6.0081 17 6 -3.8444 -0.6660 -6.7885 18 1 -3.9888 -1.7288 -6.9145 19 6 -4.6875 0.2291 -7.4293 20 7 -4.5112 1.5238 -7.2761 21 14 -6.0737 -0.4034 -8.5099 22 1 -6.9914 -1.2421 -7.6976 23 1 -6.8246 0.7462 -9.0752 24 1 -5.5075 -1.2173 -9.6154 25 6 -0.8736 -0.7265 -4.7789 26 1 -0.3633 0.5595 0.8621 27 1 -0.3634 0.4667 -0.9155 28 1 -0.3633 -1.0263 0.0536 29 1 2.2611 0.0377 2.0555 30 1 1.2955 -1.4178 1.6419 31 1 3.7179 -1.9933 -1.6919 32 1 2.3100 -2.8302 -0.9614 33 1 0.4855 -1.9840 -1.7067 34 1 1.5412 -0.2595 -3.8514 35 1 2.0022 -1.9611 -3.6055 36 1 0.4284 -3.7509 -4.0498 37 1 -1.5573 -4.4772 -5.3095 38 1 -3.1051 -2.8062 -6.2419 39 1 -5.1012 2.1499 -7.7241 40 1 -0.6808 0.3256 -4.6289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397877729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:12 Heat of formation + Delta-G solvation = -17.207437 kcal Electronic energy + Delta-G solvation = -20708.509006 eV Core-core repulsion = 17614.215173 eV Total energy + Delta-G solvation = -3094.293833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80719 -39.50778 -38.16835 -34.98363 -34.23846 -32.12049 -30.81810 -30.01218 -27.99082 -27.34333 -25.83491 -24.50287 -23.21008 -22.25960 -20.30921 -19.49458 -18.78045 -17.63116 -17.17970 -16.70870 -16.44664 -16.22154 -16.00443 -15.59040 -15.35201 -14.96873 -14.76533 -14.44765 -14.23372 -13.86661 -13.73488 -13.54940 -13.23758 -13.01284 -12.92211 -12.74683 -12.62460 -12.37910 -12.28661 -12.14621 -12.12853 -11.73040 -11.51162 -11.15325 -10.91151 -10.78609 -9.66640 -9.32909 -8.95569 -8.75779 -8.45570 -6.14009 0.54932 0.77375 0.90145 1.33555 1.35116 1.45856 1.51352 2.18652 2.79715 3.09702 3.33710 3.45171 3.56210 3.85383 3.95453 4.03613 4.10341 4.15621 4.20241 4.34667 4.41838 4.53939 4.61803 4.65837 4.68946 4.70633 4.78231 4.83467 4.87855 5.11773 5.14500 5.18761 5.33209 5.33716 5.63309 5.69618 5.76396 5.79383 6.00883 6.05011 6.27402 6.41002 6.99178 7.81450 8.77635 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.030737 B = 0.002956 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.730713 B = 9468.545189 C =10005.025729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.085 4.085 3 H 0.085 0.915 4 C -0.048 4.048 5 S -0.346 6.346 6 C -0.082 4.082 7 C 0.092 3.908 8 H 0.091 0.909 9 N -0.673 5.673 10 C 0.109 3.891 11 C -0.035 4.035 12 C -0.183 4.183 13 C -0.073 4.073 14 C -0.246 4.246 15 C 0.111 3.889 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.023 4.023 20 N -0.922 5.922 21 Si 1.017 2.983 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.258 1.258 25 C -0.181 4.181 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.349 0.651 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.115 0.885 39 H 0.272 0.728 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.879 -8.349 13.237 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.105 4.105 3 H 0.104 0.896 4 C -0.196 4.196 5 S -0.120 6.120 6 C -0.232 4.232 7 C -0.019 4.019 8 H 0.109 0.891 9 N -0.305 5.305 10 C -0.019 4.019 11 C -0.036 4.036 12 C -0.201 4.201 13 C -0.091 4.091 14 C -0.266 4.266 15 C 0.061 3.939 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.221 4.221 20 N -0.560 5.560 21 Si 0.837 3.163 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.182 1.182 25 C -0.201 4.201 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.169 0.831 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.165 0.835 37 H 0.161 0.839 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.627 -7.515 13.682 20.722 hybrid contribution -1.366 -0.412 -1.225 1.881 sum 12.261 -7.927 12.458 19.193 Atomic orbital electron populations 1.21578 0.93198 1.01809 1.01350 1.21580 0.97695 1.00250 0.90994 0.89641 1.24354 0.93907 1.01174 1.00115 1.88171 1.27544 1.77113 1.19155 1.25035 1.02546 1.01547 0.94034 1.22192 0.89425 0.95011 0.95311 0.89112 1.60828 1.30183 1.38253 1.01242 1.20828 0.92585 1.01207 0.87293 1.19542 0.95382 0.92584 0.96098 1.20984 0.99673 0.94962 1.04521 1.21121 0.93443 0.99169 0.95329 1.21298 1.03834 0.92597 1.08837 1.19934 0.90607 0.89674 0.93688 1.83943 1.37200 1.33825 1.59177 1.21769 1.07114 0.94329 1.25764 0.88220 1.26576 1.01484 0.95039 0.98955 1.70182 1.39631 1.02643 1.43542 0.84667 0.76093 0.77963 0.77623 1.18157 1.19653 1.18191 1.20213 0.95235 0.99719 1.04955 0.92955 0.92560 0.92866 0.86744 0.88524 0.87076 0.88483 0.83090 0.90661 0.91836 0.83513 0.83903 0.86704 0.91890 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 7.92 71.98 0.57 -1.66 16 2 C -0.08 -1.35 3.17 -10.59 -0.03 -1.38 16 3 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 4 C -0.05 -0.69 6.92 72.41 0.50 -0.18 16 5 S -0.35 -6.31 23.27 -56.49 -1.31 -7.62 16 6 C -0.08 -1.21 6.67 72.41 0.48 -0.73 16 7 C 0.09 1.51 2.92 45.12 0.13 1.64 16 8 H 0.09 1.55 7.78 -2.39 -0.02 1.53 16 9 N -0.67 -13.34 4.00 -494.50 -1.98 -15.31 16 10 C 0.11 2.44 5.59 85.56 0.48 2.91 16 11 C -0.04 -1.10 5.39 -19.88 -0.11 -1.21 16 12 C -0.18 -5.16 9.70 22.30 0.22 -4.95 16 13 C -0.07 -2.37 10.04 22.25 0.22 -2.15 16 14 C -0.25 -10.59 9.17 22.39 0.21 -10.38 16 15 C 0.11 5.51 6.65 22.58 0.15 5.66 16 16 O -0.23 -14.24 9.76 -22.73 -0.22 -14.46 16 17 C -0.41 -24.26 9.49 67.92 0.64 -23.61 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 19 C -0.02 -1.33 5.49 84.84 0.47 -0.86 16 20 N -0.92 -57.00 13.67 21.62 0.30 -56.71 16 21 Si 1.02 42.98 29.55 68.60 2.03 45.01 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 C -0.18 -7.62 9.64 22.39 0.22 -7.40 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 1.35 7.46 -2.39 -0.02 1.33 16 28 H 0.05 0.97 7.50 -2.39 -0.02 0.95 16 29 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 1.30 7.83 -2.39 -0.02 1.28 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.32 7.63 -2.39 -0.02 1.31 16 33 H 0.35 6.50 7.67 -89.70 -0.69 5.81 16 34 H 0.07 1.78 7.98 -2.39 -0.02 1.76 16 35 H 0.06 1.11 7.82 -2.39 -0.02 1.09 16 36 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -69.87 337.88 3.31 -66.56 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.35 Total: 26.84 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 4.14 Total: -44.30 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.68 Total: -72.02 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.22 Total: -14.46 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -6.31 SS G_CDS: -1.31 Total: -7.62 kcal Total: -69.87 3.31 -66.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397877729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.356 kcal (2) G-P(sol) polarization free energy of solvation -69.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds