Wall clock time and date at job start Tue Mar 31 2020 08:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47060 * 2 1 4 4 C 1.50698 * 109.47406 * 120.00152 * 2 1 3 5 5 C 1.38237 * 119.99897 * 339.36540 * 4 2 1 6 6 C 1.38233 * 119.99966 * 179.81482 * 5 4 2 7 7 C 1.38235 * 120.00091 * 0.38793 * 6 5 4 8 8 C 1.38233 * 119.99948 * 359.86112 * 7 6 5 9 9 C 1.38236 * 120.00127 * 159.63198 * 4 2 1 10 10 N 1.46506 * 109.47096 * 239.99936 * 2 1 3 11 11 C 1.46495 * 120.00135 * 295.78269 * 10 2 1 12 12 C 1.34782 * 119.99804 * 115.50585 * 10 2 1 13 13 O 1.21280 * 119.99789 * 0.02562 * 12 10 2 14 14 C 1.50694 * 119.99896 * 180.02562 * 12 10 2 15 15 S 1.81401 * 109.47080 * 180.02562 * 14 12 10 16 16 C 1.81396 * 103.00120 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47463 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99979 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00546 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99408 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00362 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47323 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47610 * 119.99770 * 21 19 17 24 24 H 1.48502 * 109.47097 * 240.00401 * 21 19 17 25 25 H 1.08994 * 109.47033 * 60.00315 * 1 2 3 26 26 H 1.08999 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46628 * 299.99678 * 1 2 3 28 28 H 1.08000 * 119.99777 * 359.97438 * 5 4 2 29 29 H 1.08000 * 120.00081 * 180.22513 * 6 5 4 30 30 H 1.07997 * 120.00214 * 179.84272 * 7 6 5 31 31 H 1.08005 * 120.00182 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.00244 * 359.97438 * 9 4 2 33 33 H 1.08998 * 109.47142 * 95.43808 * 11 10 2 34 34 H 1.09000 * 109.47240 * 215.43351 * 11 10 2 35 35 H 1.09002 * 109.47169 * 335.43360 * 11 10 2 36 36 H 1.08996 * 109.47170 * 300.00250 * 14 12 10 37 37 H 1.09004 * 109.46941 * 60.00272 * 14 12 10 38 38 H 1.09001 * 109.47325 * 299.99830 * 16 15 14 39 39 H 1.08999 * 109.47668 * 59.99289 * 16 15 14 40 40 H 0.97003 * 119.99702 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.2065 -0.8576 2.3291 6 6 1.6661 -1.5127 3.4564 7 6 2.9542 -2.0134 3.4879 8 6 3.7817 -1.8617 2.3911 9 6 3.3209 -1.2100 1.2624 10 7 2.0183 -0.6906 -1.1962 11 6 1.7423 -2.1172 -1.3824 12 6 2.7169 -0.0122 -2.1281 13 8 2.9415 1.1699 -1.9761 14 6 3.2187 -0.7224 -3.3588 15 16 4.1153 0.4519 -4.4112 16 6 4.6318 -0.5719 -5.8169 17 6 5.4016 0.2738 -6.7983 18 1 5.5636 1.3224 -6.5968 19 6 5.8992 -0.2911 -7.9535 20 7 5.7023 -1.5681 -8.1985 21 14 6.8541 0.7570 -9.1695 22 1 6.9364 2.1509 -8.6640 23 1 8.2238 0.2062 -9.3292 24 1 6.1605 0.7475 -10.4826 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 0.2014 -0.4632 2.3059 29 1 1.0197 -1.6309 4.3134 30 1 3.3140 -2.5229 4.3695 31 1 4.7883 -2.2526 2.4158 32 1 3.9675 -1.0916 0.4054 33 1 0.8534 -2.2375 -2.0016 34 1 2.5930 -2.5911 -1.8721 35 1 1.5750 -2.5846 -0.4120 36 1 3.8883 -1.5305 -3.0643 37 1 2.3736 -1.1338 -3.9109 38 1 5.2656 -1.3842 -5.4613 39 1 3.7512 -0.9864 -6.3075 40 1 6.0521 -1.9654 -9.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:23 Heat of formation + Delta-G solvation = -10.939604 kcal Electronic energy + Delta-G solvation = -20459.453570 eV Core-core repulsion = 17365.431531 eV Total energy + Delta-G solvation = -3094.022039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43575 -38.96483 -36.04766 -33.13619 -33.03565 -31.15797 -29.81803 -28.87713 -28.42294 -26.97205 -24.19667 -23.05939 -22.56610 -21.10914 -19.21873 -17.41174 -17.18114 -16.59118 -16.05888 -15.70371 -15.22595 -15.07204 -14.87490 -14.38779 -14.08748 -13.66473 -13.52948 -13.33317 -13.11270 -12.69206 -12.56155 -12.45521 -12.40875 -12.24438 -12.04865 -11.90374 -11.75372 -11.17804 -11.10566 -10.88337 -10.67301 -10.01341 -9.75565 -9.52551 -9.14442 -8.98424 -8.76104 -8.72769 -8.60582 -6.63022 -6.18626 -4.21981 1.07586 1.17715 2.33742 2.73459 3.07414 3.26745 3.33876 3.41274 3.59548 3.85229 4.35676 4.37685 4.60834 4.74206 4.76800 4.89698 4.95386 5.00711 5.14340 5.18984 5.22405 5.26046 5.35335 5.40246 5.47458 5.54096 5.65528 5.72028 5.76681 5.81273 5.91682 6.20624 6.27763 6.31078 6.53603 6.76178 7.09224 7.10316 7.28224 7.77267 8.02941 8.24889 8.80594 9.41070 10.93021 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.032817 B = 0.002844 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.001874 B = 9842.719123 C =10106.015710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 H 0.113 0.887 4 C -0.093 4.093 5 C -0.115 4.115 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.119 4.119 9 C -0.101 4.101 10 N -0.613 5.613 11 C 0.078 3.922 12 C 0.534 3.466 13 O -0.513 6.513 14 C -0.127 4.127 15 S -0.237 6.237 16 C 0.074 3.926 17 C -0.508 4.508 18 H 0.068 0.932 19 C 0.065 3.935 20 N -0.894 5.894 21 Si 0.906 3.094 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.777 -4.628 22.036 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.073 3.927 3 H 0.131 0.869 4 C -0.094 4.094 5 C -0.133 4.133 6 C -0.140 4.140 7 C -0.141 4.141 8 C -0.137 4.137 9 C -0.119 4.119 10 N -0.348 5.348 11 C -0.065 4.065 12 C 0.322 3.678 13 O -0.387 6.387 14 C -0.278 4.278 15 S -0.011 6.011 16 C -0.073 4.073 17 C -0.548 4.548 18 H 0.087 0.913 19 C -0.139 4.139 20 N -0.533 5.533 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.145 0.855 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.440 -3.053 22.157 24.683 hybrid contribution 0.272 -1.224 -0.902 1.545 sum -10.168 -4.278 21.254 23.947 Atomic orbital electron populations 1.22193 0.94317 1.02546 1.02719 1.19862 0.94048 0.97485 0.81328 0.86915 1.20164 0.94494 0.99226 0.95561 1.21135 0.99758 0.99425 0.93010 1.21129 0.96082 0.98704 0.98092 1.21171 0.94307 1.00153 0.98432 1.21185 0.99852 0.99253 0.93416 1.21056 0.95238 0.97370 0.98278 1.47841 1.55813 1.10420 1.20724 1.21773 1.01656 0.80645 1.02449 1.20068 0.77199 0.87119 0.83459 1.90717 1.55841 1.15218 1.76923 1.23391 1.03953 1.03026 0.97420 1.87248 1.69719 1.20098 1.24074 1.21162 0.99049 0.96139 0.90919 1.20693 1.34423 0.96264 1.03414 0.91350 1.24960 0.96030 0.95206 0.97702 1.69963 1.45667 1.11210 1.26411 0.86293 0.79371 0.80533 0.80475 1.19345 1.20738 1.20742 0.91671 0.92015 0.91137 0.85541 0.86122 0.86234 0.86020 0.86086 0.92414 0.90909 0.90839 0.88175 0.88126 0.94680 0.94669 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 8.26 37.16 0.31 -1.07 16 2 C 0.18 1.95 3.03 -69.08 -0.21 1.74 16 3 H 0.11 1.51 6.91 -51.93 -0.36 1.15 16 4 C -0.09 -0.95 4.47 -104.62 -0.47 -1.42 16 5 C -0.11 -0.98 9.12 -39.58 -0.36 -1.34 16 6 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 7 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 8 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 9 C -0.10 -1.09 8.81 -39.58 -0.35 -1.44 16 10 N -0.61 -7.48 2.07 -175.27 -0.36 -7.84 16 11 C 0.08 0.72 9.00 59.84 0.54 1.26 16 12 C 0.53 8.74 7.69 -10.99 -0.08 8.66 16 13 O -0.51 -10.37 15.20 5.56 0.08 -10.28 16 14 C -0.13 -2.16 5.05 36.00 0.18 -1.98 16 15 S -0.24 -5.45 20.79 -107.50 -2.24 -7.68 16 16 C 0.07 1.94 5.70 36.00 0.21 2.15 16 17 C -0.51 -14.54 9.13 -34.44 -0.31 -14.86 16 18 H 0.07 1.98 7.71 -52.49 -0.40 1.57 16 19 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 20 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 21 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.47 7.78 -51.93 -0.40 0.07 16 27 H 0.07 0.49 6.67 -51.93 -0.35 0.14 16 28 H 0.13 0.85 5.99 -52.49 -0.31 0.53 16 29 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.12 1.45 7.71 -52.49 -0.40 1.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.65 6.68 -51.93 -0.35 0.31 16 35 H 0.07 0.60 6.97 -51.93 -0.36 0.24 16 36 H 0.10 1.53 7.42 -51.93 -0.39 1.14 16 37 H 0.10 1.55 8.10 -51.92 -0.42 1.13 16 38 H 0.03 0.94 8.14 -51.92 -0.42 0.51 16 39 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -32.60 345.05 -9.28 -41.89 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.84 Total: -1.74 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.84 Total: -10.85 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.37 Total: -33.11 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -2.24 Total: -7.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.60 -9.28 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.946 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds