Wall clock time and date at job start Tue Mar 31 2020 08:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47060 * 2 1 4 4 C 1.50698 * 109.47406 * 120.00152 * 2 1 3 5 5 C 1.38237 * 119.99897 * 339.36540 * 4 2 1 6 6 C 1.38233 * 119.99966 * 179.81482 * 5 4 2 7 7 C 1.38235 * 120.00091 * 0.38793 * 6 5 4 8 8 C 1.38233 * 119.99948 * 359.86112 * 7 6 5 9 9 C 1.38236 * 120.00127 * 159.63198 * 4 2 1 10 10 N 1.46506 * 109.47096 * 239.99936 * 2 1 3 11 11 C 1.46495 * 120.00135 * 295.78269 * 10 2 1 12 12 C 1.34782 * 119.99804 * 115.50585 * 10 2 1 13 13 O 1.21280 * 119.99789 * 0.02562 * 12 10 2 14 14 C 1.50694 * 119.99896 * 180.02562 * 12 10 2 15 15 S 1.81401 * 109.47080 * 180.02562 * 14 12 10 16 16 C 1.81396 * 103.00120 * 180.02562 * 15 14 12 17 17 C 1.50697 * 109.47463 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99979 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00546 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99408 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00362 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47323 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47610 * 119.99770 * 21 19 17 24 24 H 1.48502 * 109.47097 * 240.00401 * 21 19 17 25 25 H 1.08994 * 109.47033 * 60.00315 * 1 2 3 26 26 H 1.08999 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46628 * 299.99678 * 1 2 3 28 28 H 1.08000 * 119.99777 * 359.97438 * 5 4 2 29 29 H 1.08000 * 120.00081 * 180.22513 * 6 5 4 30 30 H 1.07997 * 120.00214 * 179.84272 * 7 6 5 31 31 H 1.08005 * 120.00182 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.00244 * 359.97438 * 9 4 2 33 33 H 1.08998 * 109.47142 * 95.43808 * 11 10 2 34 34 H 1.09000 * 109.47240 * 215.43351 * 11 10 2 35 35 H 1.09002 * 109.47169 * 335.43360 * 11 10 2 36 36 H 1.08996 * 109.47170 * 300.00250 * 14 12 10 37 37 H 1.09004 * 109.46941 * 60.00272 * 14 12 10 38 38 H 1.09001 * 109.47325 * 299.99830 * 16 15 14 39 39 H 1.08999 * 109.47668 * 59.99289 * 16 15 14 40 40 H 0.97003 * 119.99702 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.2065 -0.8576 2.3291 6 6 1.6661 -1.5127 3.4564 7 6 2.9542 -2.0134 3.4879 8 6 3.7817 -1.8617 2.3911 9 6 3.3209 -1.2100 1.2624 10 7 2.0183 -0.6906 -1.1962 11 6 1.7423 -2.1172 -1.3824 12 6 2.7169 -0.0122 -2.1281 13 8 2.9415 1.1699 -1.9761 14 6 3.2187 -0.7224 -3.3588 15 16 4.1153 0.4519 -4.4112 16 6 4.6318 -0.5719 -5.8169 17 6 5.4016 0.2738 -6.7983 18 1 5.5636 1.3224 -6.5968 19 6 5.8992 -0.2911 -7.9535 20 7 5.7023 -1.5681 -8.1985 21 14 6.8541 0.7570 -9.1695 22 1 6.9364 2.1509 -8.6640 23 1 8.2238 0.2062 -9.3292 24 1 6.1605 0.7475 -10.4826 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 0.2014 -0.4632 2.3059 29 1 1.0197 -1.6309 4.3134 30 1 3.3140 -2.5229 4.3695 31 1 4.7883 -2.2526 2.4158 32 1 3.9675 -1.0916 0.4054 33 1 0.8534 -2.2375 -2.0016 34 1 2.5930 -2.5911 -1.8721 35 1 1.5750 -2.5846 -0.4120 36 1 3.8883 -1.5305 -3.0643 37 1 2.3736 -1.1338 -3.9109 38 1 5.2656 -1.3842 -5.4613 39 1 3.7512 -0.9864 -6.3075 40 1 6.0521 -1.9654 -9.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413009138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:22 Heat of formation + Delta-G solvation = -28.357219 kcal Electronic energy + Delta-G solvation = -20460.208855 eV Core-core repulsion = 17365.431531 eV Total energy + Delta-G solvation = -3094.777324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43640 -39.90685 -37.09536 -35.29442 -33.97729 -31.86105 -30.94404 -30.57653 -29.74527 -27.85221 -25.34251 -24.86737 -23.25821 -22.00729 -20.25974 -18.69658 -18.37841 -18.16120 -17.42327 -16.86960 -16.71465 -16.20761 -15.85539 -15.75072 -14.98251 -14.70439 -14.59552 -14.46605 -14.37250 -14.22896 -14.06367 -13.81157 -13.50155 -13.32885 -13.16412 -12.77011 -12.75000 -12.57964 -12.53962 -12.06542 -11.86214 -11.82668 -11.58675 -11.04157 -10.75182 -10.64255 -9.86971 -9.82563 -9.61373 -8.50884 -8.34329 -6.46424 0.36322 0.49312 0.74744 1.39573 1.40057 1.44111 1.54941 1.95476 1.99401 2.36947 2.89102 3.00510 3.40679 3.67453 3.91751 4.00991 4.13164 4.16748 4.21720 4.27378 4.28638 4.34519 4.58001 4.62429 4.66931 4.73180 4.86205 4.93255 4.94934 4.95070 5.06673 5.15711 5.21393 5.39829 5.57180 5.58184 5.62939 5.72379 5.89118 6.09603 6.17972 6.60378 7.00803 7.21269 8.78020 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.032817 B = 0.002844 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.001874 B = 9842.719123 C =10106.015710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.174 3.826 3 H 0.082 0.918 4 C -0.103 4.103 5 C -0.113 4.113 6 C -0.121 4.121 7 C -0.123 4.123 8 C -0.129 4.129 9 C -0.122 4.122 10 N -0.598 5.598 11 C 0.071 3.929 12 C 0.533 3.467 13 O -0.562 6.562 14 C -0.110 4.110 15 S -0.275 6.275 16 C 0.086 3.914 17 C -0.537 4.537 18 H 0.057 0.943 19 C 0.018 3.982 20 N -0.922 5.922 21 Si 0.975 3.025 22 H -0.269 1.269 23 H -0.271 1.271 24 H -0.270 1.270 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.020 0.980 39 H 0.021 0.979 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 -5.679 23.628 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.071 3.929 3 H 0.100 0.900 4 C -0.104 4.104 5 C -0.132 4.132 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.147 4.147 9 C -0.140 4.140 10 N -0.331 5.331 11 C -0.071 4.071 12 C 0.321 3.679 13 O -0.440 6.440 14 C -0.261 4.261 15 S -0.049 6.049 16 C -0.061 4.061 17 C -0.576 4.576 18 H 0.075 0.925 19 C -0.183 4.183 20 N -0.561 5.561 21 Si 0.798 3.202 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.196 1.196 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.693 -4.148 23.773 26.816 hybrid contribution 0.584 -0.984 -1.218 1.672 sum -11.109 -5.133 22.555 25.661 Atomic orbital electron populations 1.22155 0.91942 1.03722 1.03179 1.19950 0.95764 0.95986 0.81224 0.89965 1.20077 0.94636 0.99926 0.95781 1.21379 1.00397 0.98976 0.92406 1.21502 0.96242 0.97498 0.98601 1.21496 0.94362 0.99651 0.98601 1.21354 1.00646 0.99271 0.93450 1.21002 0.95547 0.99040 0.98426 1.47843 1.53869 1.11509 1.19893 1.22029 1.02594 0.78572 1.03887 1.19925 0.77571 0.86563 0.83861 1.90699 1.58141 1.17156 1.78026 1.23394 1.04249 1.01644 0.96803 1.87266 1.71103 1.22251 1.24293 1.20826 0.97864 0.95680 0.91767 1.20976 1.35636 0.96150 1.04818 0.92468 1.25852 0.96658 0.96492 0.99346 1.70043 1.46225 1.12616 1.27217 0.85251 0.78252 0.78611 0.78075 1.19351 1.19581 1.19559 0.92915 0.90353 0.89034 0.83431 0.83348 0.83966 0.85248 0.88310 0.90610 0.90524 0.89242 0.86155 0.85986 0.96170 0.96109 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.26 71.98 0.59 -1.73 16 2 C 0.17 3.76 3.03 44.24 0.13 3.90 16 3 H 0.08 2.31 6.91 -2.39 -0.02 2.29 16 4 C -0.10 -1.98 4.47 -19.87 -0.09 -2.07 16 5 C -0.11 -1.61 9.12 22.27 0.20 -1.41 16 6 C -0.12 -1.50 10.05 22.27 0.22 -1.27 16 7 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 8 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 9 C -0.12 -2.60 8.81 22.27 0.20 -2.40 16 10 N -0.60 -14.29 2.07 -826.80 -1.71 -16.00 16 11 C 0.07 1.18 9.00 127.77 1.15 2.33 16 12 C 0.53 17.71 7.69 87.65 0.67 18.38 16 13 O -0.56 -23.67 15.20 -3.03 -0.05 -23.71 16 14 C -0.11 -3.74 5.05 71.23 0.36 -3.38 16 15 S -0.27 -13.02 20.79 -56.49 -1.17 -14.20 16 16 C 0.09 4.64 5.70 71.23 0.41 5.04 16 17 C -0.54 -31.50 9.13 25.60 0.23 -31.27 16 18 H 0.06 3.41 7.71 -2.91 -0.02 3.39 16 19 C 0.02 1.00 5.46 84.66 0.46 1.46 16 20 N -0.92 -54.04 13.29 21.45 0.28 -53.76 16 21 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 0.95 7.78 -2.39 -0.02 0.93 16 27 H 0.09 1.01 6.67 -2.39 -0.02 1.00 16 28 H 0.15 1.41 5.99 -2.91 -0.02 1.40 16 29 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 30 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 31 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.10 2.48 7.71 -2.91 -0.02 2.46 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.24 6.68 -2.39 -0.02 1.22 16 35 H 0.09 1.25 6.97 -2.39 -0.02 1.23 16 36 H 0.12 3.61 7.42 -2.39 -0.02 3.59 16 37 H 0.12 3.63 8.10 -2.39 -0.02 3.62 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -72.76 345.05 5.39 -67.37 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.02 Total: 9.78 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 5.00 Total: -15.94 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.43 Total: -69.75 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -13.02 SS G_CDS: -1.17 Total: -14.20 kcal Total: -72.76 5.39 -67.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.013 kcal (2) G-P(sol) polarization free energy of solvation -72.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds