Wall clock time and date at job start Tue Mar 31 2020 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47103 * 2 1 4 4 H 1.09001 * 109.46756 * 55.00353 * 3 2 1 5 5 C 1.52997 * 109.47268 * 295.00758 * 3 2 1 6 6 C 1.53001 * 109.46922 * 175.00390 * 3 2 1 7 7 N 1.46501 * 109.46827 * 185.00210 * 6 3 2 8 8 C 1.34779 * 119.99951 * 179.97438 * 7 6 3 9 9 O 1.21547 * 119.99647 * 0.02562 * 8 7 6 10 10 C 1.47859 * 119.99714 * 179.97438 * 8 7 6 11 11 C 1.39673 * 120.10367 * 359.72782 * 10 8 7 12 12 C 1.38036 * 120.03612 * 179.78621 * 11 10 8 13 13 C 1.38183 * 120.24411 * 0.46681 * 12 11 10 14 14 C 1.39180 * 120.20487 * 359.78622 * 13 12 11 15 15 S 1.76195 * 120.02255 * 179.97438 * 14 13 12 16 16 C 1.76195 * 100.00055 * 265.52875 * 15 14 13 17 17 H 1.08001 * 120.00260 * 5.11990 * 16 15 14 18 18 C 1.38734 * 119.99998 * 185.11941 * 16 15 14 19 19 N 1.31626 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99765 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 60.00171 * 20 18 16 22 22 H 1.48502 * 109.46717 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47323 * 299.99729 * 20 18 16 24 24 C 1.38878 * 119.95474 * 359.97438 * 14 13 12 25 25 H 1.09000 * 109.46472 * 299.99571 * 1 2 3 26 26 H 1.08991 * 109.47715 * 59.99239 * 1 2 3 27 27 H 1.09002 * 109.46738 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46486 * 240.00986 * 2 1 3 29 29 H 1.08991 * 109.47715 * 120.00761 * 2 1 3 30 30 H 1.08995 * 109.47570 * 59.99729 * 5 3 2 31 31 H 1.09001 * 109.46901 * 299.99506 * 5 3 2 32 32 H 1.08997 * 109.46875 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.47150 * 305.00450 * 6 3 2 34 34 H 1.09004 * 109.47014 * 65.00556 * 6 3 2 35 35 H 0.96998 * 119.99751 * 0.02562 * 7 6 3 36 36 H 1.07998 * 119.97920 * 359.97438 * 11 10 8 37 37 H 1.08003 * 119.87922 * 180.21233 * 12 11 10 38 38 H 1.08008 * 119.89659 * 179.76429 * 13 12 11 39 39 H 0.96999 * 119.99495 * 180.02562 * 19 18 16 40 40 H 1.07992 * 120.11741 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5649 1.4443 0.1256 7 7 4.0433 2.8238 0.2458 8 6 5.3624 3.0712 0.3693 9 8 6.1551 2.1499 0.3807 10 6 5.8453 4.4635 0.4900 11 6 4.9368 5.5243 0.4705 12 6 5.3887 6.8233 0.5876 13 6 6.7402 7.0812 0.7150 14 6 7.6549 6.0322 0.7304 15 16 9.3772 6.3666 0.8923 16 6 9.8451 6.3912 -0.8063 17 1 9.0919 6.3034 -1.5752 18 6 11.1811 6.5233 -1.1559 19 7 12.0992 6.6298 -0.2187 20 14 11.6772 6.5486 -2.9566 21 1 11.0139 7.6898 -3.6369 22 1 13.1510 6.6976 -3.0619 23 1 11.2614 5.2777 -3.6026 24 6 7.2090 4.7218 0.6180 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8935 -0.5139 0.8898 30 1 0.5489 2.1254 -1.3968 31 1 2.0698 1.5877 -2.1491 32 1 1.9989 3.1542 -1.3074 33 1 3.8572 0.8799 1.0111 34 1 4.0030 0.9837 -0.7599 35 1 3.4107 3.5590 0.2371 36 1 3.8799 5.3278 0.3666 37 1 4.6836 7.6414 0.5757 38 1 7.0880 8.1000 0.8025 39 1 13.0333 6.7225 -0.4632 40 1 7.9163 3.9058 0.6301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421597313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:20 Heat of formation + Delta-G solvation = -38.259446 kcal Electronic energy + Delta-G solvation = -20134.643138 eV Core-core repulsion = 17039.436421 eV Total energy + Delta-G solvation = -3095.206717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00358 -38.08651 -37.13030 -34.05971 -32.49776 -31.14474 -30.54736 -29.78031 -27.04041 -25.55975 -24.25625 -22.85793 -22.07468 -20.71287 -20.09769 -18.28259 -17.36464 -16.20722 -15.87641 -15.62220 -15.12778 -14.96461 -14.83986 -14.50455 -14.22041 -13.81808 -13.65224 -13.38371 -13.08331 -12.92979 -12.43242 -12.38425 -12.21839 -11.79116 -11.64753 -11.17717 -11.15785 -11.11389 -11.06455 -11.03489 -10.94316 -10.70348 -9.97818 -9.75704 -9.15072 -9.13621 -8.99778 -8.57255 -8.02598 -6.70423 -6.27551 -4.01562 1.17715 1.67337 3.06026 3.13086 3.22727 3.24717 3.27527 3.47964 4.10135 4.27338 4.37556 4.47253 4.54675 4.86869 4.95058 5.07154 5.09069 5.10521 5.16165 5.24723 5.26682 5.43648 5.48428 5.54585 5.61160 5.64912 5.69669 5.70010 5.77309 5.88333 5.98166 6.00459 6.01493 6.26035 6.39046 6.59760 6.64177 6.94115 7.19953 7.51318 7.58200 8.31795 8.33371 9.18080 10.79148 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.003054 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.279871 B = 9167.251453 C = 9603.026953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.104 4.104 4 H 0.077 0.923 5 C -0.151 4.151 6 C 0.123 3.877 7 N -0.731 5.731 8 C 0.562 3.438 9 O -0.535 6.535 10 C -0.154 4.154 11 C -0.090 4.090 12 C -0.141 4.141 13 C -0.056 4.056 14 C -0.107 4.107 15 S -0.035 6.035 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.273 1.273 24 C -0.019 4.019 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.398 0.602 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.270 0.730 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.834 -6.742 0.469 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.123 4.123 4 H 0.095 0.905 5 C -0.208 4.208 6 C 0.000 4.000 7 N -0.385 5.385 8 C 0.351 3.649 9 O -0.412 6.412 10 C -0.159 4.159 11 C -0.109 4.109 12 C -0.161 4.161 13 C -0.077 4.077 14 C -0.217 4.217 15 S 0.200 5.800 16 C -0.667 4.667 17 H 0.093 0.907 18 C -0.136 4.136 19 N -0.506 5.506 20 Si 0.747 3.253 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.041 4.041 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.347 -7.239 1.462 22.588 hybrid contribution -0.813 0.176 -2.207 2.358 sum -22.160 -7.064 -0.745 23.271 Atomic orbital electron populations 1.21810 0.95558 1.01697 1.01958 1.21495 0.96095 0.95402 1.02572 1.21421 0.94337 0.97418 0.99133 0.90500 1.21920 1.01470 1.00539 0.96915 1.21402 0.93157 0.83157 1.02299 1.45909 1.07568 1.08909 1.76115 1.18414 0.81827 0.88995 0.75706 1.90772 1.54828 1.45956 1.49654 1.19876 0.94953 0.92012 1.09083 1.21122 0.98014 0.92712 0.99100 1.21054 0.95930 0.96167 1.02942 1.21963 0.92306 0.99492 0.93904 1.22855 1.03347 0.94050 1.01473 1.83598 0.91861 1.91794 1.12777 1.22793 0.95275 1.58242 0.90425 0.90682 1.25004 0.95258 0.94395 0.98918 1.69979 1.01472 1.46388 1.32720 0.86176 0.77455 0.78994 0.82694 1.19832 1.20727 1.19788 1.21956 0.93608 0.97135 0.91353 0.92727 0.92419 0.92700 0.91568 0.91592 0.92133 0.92311 0.92609 0.91455 0.91415 0.76631 0.86610 0.85872 0.85070 0.92001 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.67 37.16 0.36 -0.47 16 2 C -0.12 -0.75 5.40 -26.73 -0.14 -0.89 16 3 C -0.10 -0.73 2.42 -90.62 -0.22 -0.95 16 4 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.15 -1.01 8.82 37.16 0.33 -0.68 16 6 C 0.12 1.26 5.06 -4.04 -0.02 1.24 16 7 N -0.73 -8.54 5.23 -61.24 -0.32 -8.86 16 8 C 0.56 9.26 7.77 -12.32 -0.10 9.17 16 9 O -0.53 -10.88 16.34 5.32 0.09 -10.79 16 10 C -0.15 -2.64 5.87 -105.00 -0.62 -3.25 16 11 C -0.09 -1.24 9.54 -39.12 -0.37 -1.62 16 12 C -0.14 -2.02 10.02 -39.68 -0.40 -2.42 16 13 C -0.06 -1.00 9.79 -39.25 -0.38 -1.38 16 14 C -0.11 -2.30 5.45 -38.99 -0.21 -2.51 16 15 S -0.03 -0.91 21.41 -107.50 -2.30 -3.21 16 16 C -0.52 -14.78 9.46 30.92 0.29 -14.49 16 17 H 0.08 2.11 7.79 -52.49 -0.41 1.70 16 18 C 0.07 2.07 5.49 -17.46 -0.10 1.98 16 19 N -0.87 -25.61 13.22 55.49 0.73 -24.88 16 20 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.38 7.18 -51.93 -0.37 0.00 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 3.57 5.68 -40.82 -0.23 3.34 16 36 H 0.12 1.11 6.40 -52.49 -0.34 0.78 16 37 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.14 3.11 7.65 -52.49 -0.40 2.71 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -32.70 348.59 -9.31 -42.01 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.80 Total: 0.95 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -1.94 Total: -17.06 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.41 Total: -33.74 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.70 -9.31 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421597313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.753 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds